1ICVA

The structure of escherichia coli nitroreductase complexed with nicotinic acid
Total Genus 64
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
64
sequence length
216
structure length
216
Chain Sequence
DIISVALKRHSTKAFDASKKLTPEQAEQIKTLLQYSPSSTNSQPWHFIVASTEEGKARVAKSAAGNYVFNERKMLDASHVVVFCAKTAMDDVWLKLVVDQEDADGRFATPEAKAANDKGRKFFADMHRKDLHDDAEWMAKQVYLNVGNFLLGVAALGLDAVPIEGFDAAILDAEFGLKEKGYTSLVVVPVGHHSVEDFNATLPKSRLPQNITLTEV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
molecule keywords OXYGEN-INSENSITIVE NAD(P)H NITROREDUCTASE
publication title The structure of Escherichia coli nitroreductase complexed with nicotinic acid: three crystal forms at 1.7 A, 1.8 A and 2.4 A resolution.
pubmed doi rcsb
source organism Escherichia coli
total genus 64
structure length 216
sequence length 216
chains with identical sequence B, C, D
ec nomenclature ec 1.5.1.34: 6,7-dihydropteridine reductase.
pdb deposition date 2001-04-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00881 Nitroreductase Nitroreductase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.109.10 Alpha Beta 3-Layer(aba) Sandwich NADH Oxidase NADH Oxidase 1icvA00
3GH8A 1DS7A 3BM2A 2H0UA 3HOIA 1OO5A 3EOFA 3H4OA 3X21A 1V5YA 1KQBA 2FREA 2ISJA 1KQCA 1ICVA 5KO8A 5KRDA 3GAGA 3EO8A 1OOQA 3E10A 1YWQA 4BNBA 1YLUA 5HDJA 1ZCHA 4BN8A 4TTCA 4URPA 1F5VA 3QDLA 4XOQA 3EO7A 2WZVA 4BN9A 3EK3A 4QLYA 4BN7A 1YLRA 3GFDA 1V5ZA 1VFRA 1YKIA 1NOXA 3X22A 2R01A 4G8SA 4BN6A 1BKJA 4XOOA 2BKJA 2ISLA 2ISKA 3BEMA 1ICUA 1IDTA 1OO6A 3GBHA 3OF4A 3HJ9A 2WQFA 5J6CA 3K6HA 3GFAA 1NECA 3E39A 2WZWA 1KQDA 1VKWA 4XOMA 3GR3A 3GE6A 2IFAA 2I7HA 3TO0A 2B67A 2HAYA 4EO3A 3GB5A 2YMVA 3PXVA 4DN2A 3GE5A 4TTBA 3M5KA 5HEIA 3G14A 5KO7A 4QLXA 3HZNA 3KOQA 3N2SA 3KWKA 1OONA 3BM1A 1ICRA 3TNZA
chains in the Genus database with same CATH superfamily
3GH8A 1DS7A 3BM2A 2H0UA 3HOIA 1OO5A 3EOFA 3H4OA 3X21A 1V5YA 1KQBA 2FREA 2ISJA 1KQCA 1ICVA 5KO8A 5KRDA 3GAGA 3EO8A 1OOQA 3E10A 1YWQA 4BNBA 1YLUA 5HDJA 1ZCHA 4BN8A 4TTCA 4URPA 1F5VA 3QDLA 4XOQA 3EO7A 2WZVA 4BN9A 3EK3A 4QLYA 4BN7A 1J6RA 1YLRA 3GFDA 1V5ZA 1VFRA 1YKIA 1NOXA 3X22A 2R01A 4G8SA 4BN6A 1BKJA 4XOOA 2BKJA 2ISLA 2ISKA 3BEMA 1ICUA 1IDTA 1OO6A 3GBHA 3OF4A 3HJ9A 2WQFA 5J6CA 3K6HA 3GFAA 1NECA 3E39A 2WZWA 1KQDA 1VKWA 4XOMA 3GR3A 3GE6A 2IFAA 2I7HA 3TO0A 2B67A 2HAYA 4EO3A 3GB5A 2YMVA 3PXVA 4DN2A 3GE5A 4TTBA 3M5KA 5HEIA 3G14A 5KO7A 4QLXA 3HZNA 3KOQA 3N2SA 3KWKA 1OONA 3BM1A 1ICRA 3TNZA
chains in the Genus database with same CATH topology
3GH8A 1DS7A 3BM2A 2H0UA 3HOIA 1OO5A 3EOFA 3H4OA 3X21A 1V5YA 1KQBA 2FREA 2ISJA 1KQCA 1ICVA 5KO8A 5KRDA 3GAGA 3EO8A 1OOQA 3E10A 1YWQA 4BNBA 1YLUA 5HDJA 1ZCHA 4BN8A 4TTCA 4URPA 1F5VA 3QDLA 4XOQA 3EO7A 2WZVA 4BN9A 3EK3A 4QLYA 4BN7A 1J6RA 1YLRA 3GFDA 1V5ZA 1VFRA 1YKIA 1NOXA 3X22A 2R01A 4G8SA 4BN6A 1BKJA 4XOOA 2BKJA 2ISLA 2ISKA 3BEMA 1ICUA 1IDTA 1OO6A 3GBHA 3OF4A 3HJ9A 2WQFA 5J6CA 3K6HA 3GFAA 1NECA 3E39A 2WZWA 1KQDA 1VKWA 4XOMA 3GR3A 3GE6A 2IFAA 2I7HA 3TO0A 2B67A 2HAYA 4EO3A 3GB5A 2YMVA 3PXVA 4DN2A 3GE5A 4TTBA 3M5KA 5HEIA 3G14A 5KO7A 4QLXA 3HZNA 3KOQA 3N2SA 3KWKA 1OONA 3BM1A 1ICRA 3TNZA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3GH8 A;  1DS7 A;  3BM2 A;  2H0U A;  3HOI A;  1OO5 A;  3EOF A;  3H4O A;  3X21 A;  1V5Y A;  1KQB A;  2FRE A;  2ISJ A;  1KQC A;  1ICV A;  5KO8 A;  5KRD A;  3GAG A;  3EO8 A;  1OOQ A;  3E10 A;  1YWQ A;  4BNB A;  1YLU A;  5HDJ A;  1ZCH A;  4BN8 A;  4TTC A;  4URP A;  1F5V A;  3QDL A;  4XOQ A;  3EO7 A;  2WZV A;  4BN9 A;  3EK3 A;  4QLY A;  4BN7 A;  1YLR A;  3GFD A;  1V5Z A;  1VFR A;  1YKI A;  1NOX A;  3X22 A;  2R01 A;  4G8S A;  4BN6 A;  1BKJ A;  4XOO A;  2BKJ A;  2ISL A;  2ISK A;  3BEM A;  1ICU A;  1IDT A;  1OO6 A;  3GBH A;  3OF4 A;  3HJ9 A;  2WQF A;  5J6C A;  3K6H A;  3GFA A;  1NEC A;  3E39 A;  2WZW A;  1KQD A;  1VKW A;  4XOM A;  3GR3 A;  3GE6 A;  2IFA A;  2I7H A;  3TO0 A;  2B67 A;  2HAY A;  4EO3 A;  3GB5 A;  2YMV A;  3PXV A;  4DN2 A;  3GE5 A;  4TTB A;  3M5K A;  5HEI A;  3G14 A;  5KO7 A;  4QLX A;  3HZN A;  3KOQ A;  3N2S A;  3KWK A;  1OON A;  3BM1 A;  1ICR A;  3TNZ A; 
#chains in the Genus database with same CATH topology
 3GH8 A;  1DS7 A;  3BM2 A;  2H0U A;  3HOI A;  1OO5 A;  3EOF A;  3H4O A;  3X21 A;  1V5Y A;  1KQB A;  2FRE A;  2ISJ A;  1KQC A;  1ICV A;  5KO8 A;  5KRD A;  3GAG A;  3EO8 A;  1OOQ A;  3E10 A;  1YWQ A;  4BNB A;  1YLU A;  5HDJ A;  1ZCH A;  4BN8 A;  4TTC A;  4URP A;  1F5V A;  3QDL A;  4XOQ A;  3EO7 A;  2WZV A;  4BN9 A;  3EK3 A;  4QLY A;  4BN7 A;  1J6R A;  1YLR A;  3GFD A;  1V5Z A;  1VFR A;  1YKI A;  1NOX A;  3X22 A;  2R01 A;  4G8S A;  4BN6 A;  1BKJ A;  4XOO A;  2BKJ A;  2ISL A;  2ISK A;  3BEM A;  1ICU A;  1IDT A;  1OO6 A;  3GBH A;  3OF4 A;  3HJ9 A;  2WQF A;  5J6C A;  3K6H A;  3GFA A;  1NEC A;  3E39 A;  2WZW A;  1KQD A;  1VKW A;  4XOM A;  3GR3 A;  3GE6 A;  2IFA A;  2I7H A;  3TO0 A;  2B67 A;  2HAY A;  4EO3 A;  3GB5 A;  2YMV A;  3PXV A;  4DN2 A;  3GE5 A;  4TTB A;  3M5K A;  5HEI A;  3G14 A;  5KO7 A;  4QLX A;  3HZN A;  3KOQ A;  3N2S A;  3KWK A;  1OON A;  3BM1 A;  1ICR A;  3TNZ A; 
#chains in the Genus database with same CATH homology
 3GH8 A;  1DS7 A;  3BM2 A;  2H0U A;  3HOI A;  1OO5 A;  3EOF A;  3H4O A;  3X21 A;  1V5Y A;  1KQB A;  2FRE A;  2ISJ A;  1KQC A;  1ICV A;  5KO8 A;  5KRD A;  3GAG A;  3EO8 A;  1OOQ A;  3E10 A;  1YWQ A;  4BNB A;  1YLU A;  5HDJ A;  1ZCH A;  4BN8 A;  4TTC A;  4URP A;  1F5V A;  3QDL A;  4XOQ A;  3EO7 A;  2WZV A;  4BN9 A;  3EK3 A;  4QLY A;  4BN7 A;  1J6R A;  1YLR A;  3GFD A;  1V5Z A;  1VFR A;  1YKI A;  1NOX A;  3X22 A;  2R01 A;  4G8S A;  4BN6 A;  1BKJ A;  4XOO A;  2BKJ A;  2ISL A;  2ISK A;  3BEM A;  1ICU A;  1IDT A;  1OO6 A;  3GBH A;  3OF4 A;  3HJ9 A;  2WQF A;  5J6C A;  3K6H A;  3GFA A;  1NEC A;  3E39 A;  2WZW A;  1KQD A;  1VKW A;  4XOM A;  3GR3 A;  3GE6 A;  2IFA A;  2I7H A;  3TO0 A;  2B67 A;  2HAY A;  4EO3 A;  3GB5 A;  2YMV A;  3PXV A;  4DN2 A;  3GE5 A;  4TTB A;  3M5K A;  5HEI A;  3G14 A;  5KO7 A;  4QLX A;  3HZN A;  3KOQ A;  3N2S A;  3KWK A;  1OON A;  3BM1 A;  1ICR A;  3TNZ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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