1IR6A

Crystal structure of exonuclease recj bound to manganese
Total Genus 120
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
120
sequence length
385
structure length
385
Chain Sequence
PLALLPLKGLREAAALLEEALRQGKRIRVHGDYDADGLTGTAILVRGLAALGADVHPFIPHRLEEGYGVLMERVPEHLEASDLFLTVDCGITNHAELRELLENGVEVIVTDHHTPGKTPPPGLVVHPALTPDLKEKPTGAGVAFLLLWALHERLGLPPPLEYADLAAVGTIADVAPLWGWNRALVKEGLARIPASSWVGLRLLAEAVGYTGKAVEVAFRIAPRINAASRLGEAEKALRLLLTDDAAEAQALVGELHRLNARRQTLEEAMLRKLLPQADPEAKAIVLLDPEGHPGVMGIVASRILEATLRPVFLVAQGKGTVRSLAPISAVEALRSAEDLLLRYGGHKEAAGFAMDEALFPAFKARVEAYAARFPDPVREVALLDL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title The crystal structure of exonuclease RecJ bound to Mn2+ ion suggests how its characteristic motifs are involved in exonuclease activity.
pubmed doi rcsb
source organism Thermus thermophilus
molecule tags Hydrolase
molecule keywords exonuclease RecJ
total genus 120
structure length 385
sequence length 385
ec nomenclature
pdb deposition date 2001-09-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01368 DHH DHH family
A PF02272 DHHA1 DHHA1 domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.310.30 Alpha Beta Roll Diaminopimelate Epimerase; Chain A, domain 1 Diaminopimelate Epimerase; Chain A, domain 1 1ir6A02
3.90.1640.30 Alpha Beta Alpha-Beta Complex inorganic pyrophosphatase (n-terminal core) inorganic pyrophosphatase (n-terminal core) 1ir6A01
4PY9A 1IR6A 2ZXOA 2ZXPA 2ZXRA 3DEVA 4LS9A 3W5WA
chains in the Genus database with same CATH superfamily
2QB8A 3ICJA 4K8LA 4JCIA 5GKXA 1YM5A 3WQZA 4IK0A 2OTNA 1QY9A 4LG3A 4J9XA 2H9FA 5H2YA 2Q9JA 1K23A 1BWZA 3W5WA 5GL3A 2Q9HA 3PTJA 1U1VA 2LT2A 4JD7A 1IR6A 1U1XA 1WPPA 5GL4A 5IWEA 3PVHA 2EB0A 2ZXRA 2MPBA 1W62A 3PW9A 2HAWA 4Q60A 1QYAA 4RPAA 4K7XA 1XUAA 2GKJA 1U0KA 2QB7A 1K20A 2QB6A 4GL6A 4OA3A 2PW0A 2KW7A 1SDJA 5ANPA 2ZXPA 4Q2HA 1GQZA 4FC5A 3G98A 2KPTA 1S7JA 2YMAA 3EJXA 1WPMA 3G7KA 4J9WA 3DEVA 2GKEA 1WPNA 1TM0A 2AZPA 2PVZA 3EKMA 2ENXA 3FVEA 1T6KA 1XUBA 3IGHX 5GL2A 1U1WA 1I74A 4K7GB 4JBDA 4LS9A 2IW4A 4LB0A 5H2GA 4JUUA 5HA4A 3EDNA 2ZVFA 5M47A 4DWZA 4PY9A 4DUNA 4IJZA 2ZXOA 1W61A
chains in the Genus database with same CATH topology
2QB8A 3ICJA 4K8LA 4JCIA 5GKXA 1YM5A 3WQZA 4IK0A 2OTNA 1QY9A 4LG3A 4J9XA 2H9FA 5H2YA 2Q9JA 1K23A 1BWZA 3W5WA 5GL3A 2Q9HA 3PTJA 1U1VA 2LT2A 4JD7A 1IR6A 1U1XA 1WPPA 5GL4A 5IWEA 3PVHA 2EB0A 2ZXRA 2MPBA 1W62A 3PW9A 2HAWA 4Q60A 1QYAA 4RPAA 4K7XA 1XUAA 2GKJA 1U0KA 2QB7A 1K20A 2QB6A 4GL6A 4OA3A 2PW0A 2KW7A 1SDJA 5ANPA 2ZXPA 4Q2HA 1GQZA 4FC5A 3G98A 2KPTA 1S7JA 2YMAA 3EJXA 1WPMA 3G7KA 4J9WA 3DEVA 2GKEA 1WPNA 1TM0A 2AZPA 2PVZA 3EKMA 2ENXA 3FVEA 1T6KA 1XUBA 3IGHX 5GL2A 1U1WA 1I74A 4K7GB 4JBDA 4LS9A 2IW4A 4LB0A 5H2GA 4JUUA 5HA4A 3EDNA 2ZVFA 5M47A 4DWZA 4PY9A 4DUNA 4IJZA 2ZXOA 1W61A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4PY9 A;  1IR6 A;  2ZXO A;  2ZXP A;  2ZXR A;  3DEV A;  4LS9 A;  3W5W A; 
#chains in the Genus database with same CATH topology
 2QB8 A;  3ICJ A;  4K8L A;  4JCI A;  5GKX A;  1YM5 A;  3WQZ A;  4IK0 A;  2OTN A;  1QY9 A;  4LG3 A;  4J9X A;  2H9F A;  5H2Y A;  2Q9J A;  1K23 A;  1BWZ A;  3W5W A;  5GL3 A;  2Q9H A;  3PTJ A;  1U1V A;  2LT2 A;  4JD7 A;  1IR6 A;  1U1X A;  1WPP A;  5GL4 A;  5IWE A;  3PVH A;  2EB0 A;  2ZXR A;  2MPB A;  1W62 A;  3PW9 A;  2HAW A;  4Q60 A;  1QYA A;  4RPA A;  4K7X A;  1XUA A;  2GKJ A;  1U0K A;  2QB7 A;  1K20 A;  2QB6 A;  4GL6 A;  4OA3 A;  2PW0 A;  2KW7 A;  1SDJ A;  5ANP A;  2ZXP A;  4Q2H A;  1GQZ A;  4FC5 A;  3G98 A;  2KPT A;  1S7J A;  2YMA A;  3EJX A;  1WPM A;  3G7K A;  4J9W A;  3DEV A;  2GKE A;  1WPN A;  1TM0 A;  2AZP A;  2PVZ A;  3EKM A;  2ENX A;  3FVE A;  1T6K A;  1XUB A;  3IGH X;  5GL2 A;  1U1W A;  1I74 A;  4K7G B;  4JBD A;  4LS9 A;  2IW4 A;  4LB0 A;  5H2G A;  4JUU A;  5HA4 A;  3EDN A;  2ZVF A;  5M47 A;  4DWZ A;  4PY9 A;  4DUN A;  4IJZ A;  2ZXO A;  1W61 A; 
#chains in the Genus database with same CATH homology
 2QB8 A;  3ICJ A;  4K8L A;  4JCI A;  5GKX A;  1YM5 A;  3WQZ A;  4IK0 A;  2OTN A;  1QY9 A;  4LG3 A;  4J9X A;  2H9F A;  5H2Y A;  2Q9J A;  1K23 A;  1BWZ A;  3W5W A;  5GL3 A;  2Q9H A;  3PTJ A;  1U1V A;  2LT2 A;  4JD7 A;  1IR6 A;  1U1X A;  1WPP A;  5GL4 A;  5IWE A;  3PVH A;  2EB0 A;  2ZXR A;  2MPB A;  1W62 A;  3PW9 A;  2HAW A;  4Q60 A;  1QYA A;  4RPA A;  4K7X A;  1XUA A;  2GKJ A;  1U0K A;  2QB7 A;  1K20 A;  2QB6 A;  4GL6 A;  4OA3 A;  2PW0 A;  2KW7 A;  1SDJ A;  5ANP A;  2ZXP A;  4Q2H A;  1GQZ A;  4FC5 A;  3G98 A;  2KPT A;  1S7J A;  2YMA A;  3EJX A;  1WPM A;  3G7K A;  4J9W A;  3DEV A;  2GKE A;  1WPN A;  1TM0 A;  2AZP A;  2PVZ A;  3EKM A;  2ENX A;  3FVE A;  1T6K A;  1XUB A;  3IGH X;  5GL2 A;  1U1W A;  1I74 A;  4K7G B;  4JBD A;  4LS9 A;  2IW4 A;  4LB0 A;  5H2G A;  4JUU A;  5HA4 A;  3EDN A;  2ZVF A;  5M47 A;  4DWZ A;  4PY9 A;  4DUN A;  4IJZ A;  2ZXO A;  1W61 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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