1IR6A

Crystal structure of exonuclease recj bound to manganese
Total Genus 120
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
120
sequence length
385
structure length
385
Chain Sequence
PLALLPLKGLREAAALLEEALRQGKRIRVHGDYDADGLTGTAILVRGLAALGADVHPFIPHRLEEGYGVLMERVPEHLEASDLFLTVDCGITNHAELRELLENGVEVIVTDHHTPGKTPPPGLVVHPALTPDLKEKPTGAGVAFLLLWALHERLGLPPPLEYADLAAVGTIADVAPLWGWNRALVKEGLARIPASSWVGLRLLAEAVGYTGKAVEVAFRIAPRINAASRLGEAEKALRLLLTDDAAEAQALVGELHRLNARRQTLEEAMLRKLLPQADPEAKAIVLLDPEGHPGVMGIVASRILEATLRPVFLVAQGKGTVRSLAPISAVEALRSAEDLLLRYGGHKEAAGFAMDEALFPAFKARVEAYAARFPDPVREVALLDL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title The crystal structure of exonuclease RecJ bound to Mn2+ ion suggests how its characteristic motifs are involved in exonuclease activity.
pubmed doi rcsb
source organism Thermus thermophilus
molecule tags Hydrolase
molecule keywords exonuclease RecJ
total genus 120
structure length 385
sequence length 385
ec nomenclature
pdb deposition date 2001-09-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01368 DHH DHH family
A PF02272 DHHA1 DHHA1 domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.310.30 Alpha Beta Roll Diaminopimelate Epimerase; Chain A, domain 1 Diaminopimelate Epimerase; Chain A, domain 1 1ir6A02
3.90.1640.30 Alpha Beta Alpha-Beta Complex inorganic pyrophosphatase (n-terminal core) inorganic pyrophosphatase (n-terminal core) 1ir6A01
2ZXPA 3W5WA 4LS9A 2ZXOA 1IR6A 4PY9A 2ZXRA 3DEVA
chains in the Genus database with same CATH superfamily
3G98A 1S7JA 1T6KA 3ICJA 1XUBA 1QY9A 4Q60A 4IJZA 2ENXA 1I74A 1BWZA 2Q9HA 2KPTA 2H9FA 3G7KA 2AZPA 5IWEA 1IR6A 4JCIA 5GL3A 3EKMA 4DWZA 3PTJA 2GKJA 1SDJA 2ZXOA 1TM0A 1U1WA 1WPMA 2EB0A 2OTNA 3PW9A 2PW0A 1W62A 5HA4A 4GL6A 2QB7A 4JUUA 2MPBA 4K7GB 2ZXPA 5H2YA 4FC5A 1GQZA 2HAWA 2QB8A 2YMAA 4J9WA 1YM5A 3EDNA 3DEVA 2PVZA 3EJXA 1WPNA 2ZVFA 1U0KA 2IW4A 4LS9A 4OA3A 3IGHX 4J9XA 3PVHA 1WPPA 1K20A 2Q9JA 5ANPA 3FVEA 4DUNA 3WQZA 5GL4A 4Q2HA 2GKEA 4JD7A 5GKXA 4K7XA 3W5WA 4LB0A 4LG3A 4IK0A 5H2GA 4K8LA 2LT2A 1K23A 2QB6A 5GL2A 4PY9A 2ZXRA 1U1VA 1QYAA 1U1XA 5M47A 2KW7A 1XUAA 1W61A 4RPAA 4JBDA
chains in the Genus database with same CATH topology
3G98A 1S7JA 1T6KA 3ICJA 1XUBA 1QY9A 4Q60A 4IJZA 2ENXA 1I74A 1BWZA 2Q9HA 2KPTA 2H9FA 3G7KA 2AZPA 5IWEA 1IR6A 4JCIA 5GL3A 3EKMA 4DWZA 3PTJA 2GKJA 1SDJA 2ZXOA 1TM0A 1U1WA 1WPMA 2EB0A 2OTNA 3PW9A 2PW0A 1W62A 5HA4A 4GL6A 2QB7A 4JUUA 2MPBA 4K7GB 2ZXPA 5H2YA 4FC5A 1GQZA 2HAWA 2QB8A 2YMAA 4J9WA 1YM5A 3EDNA 3DEVA 2PVZA 3EJXA 1WPNA 2ZVFA 1U0KA 2IW4A 4LS9A 4OA3A 3IGHX 4J9XA 3PVHA 1WPPA 1K20A 2Q9JA 5ANPA 3FVEA 4DUNA 3WQZA 5GL4A 4Q2HA 2GKEA 4JD7A 5GKXA 4K7XA 3W5WA 4LB0A 4LG3A 4IK0A 5H2GA 4K8LA 2LT2A 1K23A 2QB6A 5GL2A 4PY9A 2ZXRA 1U1VA 1QYAA 1U1XA 5M47A 2KW7A 1XUAA 1W61A 4RPAA 4JBDA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2ZXP A;  3W5W A;  4LS9 A;  2ZXO A;  1IR6 A;  4PY9 A;  2ZXR A;  3DEV A; 
#chains in the Genus database with same CATH topology
 3G98 A;  1S7J A;  1T6K A;  3ICJ A;  1XUB A;  1QY9 A;  4Q60 A;  4IJZ A;  2ENX A;  1I74 A;  1BWZ A;  2Q9H A;  2KPT A;  2H9F A;  3G7K A;  2AZP A;  5IWE A;  1IR6 A;  4JCI A;  5GL3 A;  3EKM A;  4DWZ A;  3PTJ A;  2GKJ A;  1SDJ A;  2ZXO A;  1TM0 A;  1U1W A;  1WPM A;  2EB0 A;  2OTN A;  3PW9 A;  2PW0 A;  1W62 A;  5HA4 A;  4GL6 A;  2QB7 A;  4JUU A;  2MPB A;  4K7G B;  2ZXP A;  5H2Y A;  4FC5 A;  1GQZ A;  2HAW A;  2QB8 A;  2YMA A;  4J9W A;  1YM5 A;  3EDN A;  3DEV A;  2PVZ A;  3EJX A;  1WPN A;  2ZVF A;  1U0K A;  2IW4 A;  4LS9 A;  4OA3 A;  3IGH X;  4J9X A;  3PVH A;  1WPP A;  1K20 A;  2Q9J A;  5ANP A;  3FVE A;  4DUN A;  3WQZ A;  5GL4 A;  4Q2H A;  2GKE A;  4JD7 A;  5GKX A;  4K7X A;  3W5W A;  4LB0 A;  4LG3 A;  4IK0 A;  5H2G A;  4K8L A;  2LT2 A;  1K23 A;  2QB6 A;  5GL2 A;  4PY9 A;  2ZXR A;  1U1V A;  1QYA A;  1U1X A;  5M47 A;  2KW7 A;  1XUA A;  1W61 A;  4RPA A;  4JBD A; 
#chains in the Genus database with same CATH homology
 3G98 A;  1S7J A;  1T6K A;  3ICJ A;  1XUB A;  1QY9 A;  4Q60 A;  4IJZ A;  2ENX A;  1I74 A;  1BWZ A;  2Q9H A;  2KPT A;  2H9F A;  3G7K A;  2AZP A;  5IWE A;  1IR6 A;  4JCI A;  5GL3 A;  3EKM A;  4DWZ A;  3PTJ A;  2GKJ A;  1SDJ A;  2ZXO A;  1TM0 A;  1U1W A;  1WPM A;  2EB0 A;  2OTN A;  3PW9 A;  2PW0 A;  1W62 A;  5HA4 A;  4GL6 A;  2QB7 A;  4JUU A;  2MPB A;  4K7G B;  2ZXP A;  5H2Y A;  4FC5 A;  1GQZ A;  2HAW A;  2QB8 A;  2YMA A;  4J9W A;  1YM5 A;  3EDN A;  3DEV A;  2PVZ A;  3EJX A;  1WPN A;  2ZVF A;  1U0K A;  2IW4 A;  4LS9 A;  4OA3 A;  3IGH X;  4J9X A;  3PVH A;  1WPP A;  1K20 A;  2Q9J A;  5ANP A;  3FVE A;  4DUN A;  3WQZ A;  5GL4 A;  4Q2H A;  2GKE A;  4JD7 A;  5GKX A;  4K7X A;  3W5W A;  4LB0 A;  4LG3 A;  4IK0 A;  5H2G A;  4K8L A;  2LT2 A;  1K23 A;  2QB6 A;  5GL2 A;  4PY9 A;  2ZXR A;  1U1V A;  1QYA A;  1U1X A;  5M47 A;  2KW7 A;  1XUA A;  1W61 A;  4RPA A;  4JBD A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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