1IS8A

Crystal structure of rat gtpchi/gfrp stimulatory complex plus zn
Total Genus 63
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
63
sequence length
194
structure length
192
Chain Sequence
RPRSEEDNELNLPNLAAAYSSILRSLGEDPQRQGLLKTPWRAATAMQFFTKGYQETISDVLNDAIFDEDHDEMVIVKDIDMFSMCEHHLVPFVGRVHIGYLPNKQVLGLSKLARIVEIYSRRLQVQERLTKQIAVAITEALQPAGVGVVIEATHMCMVMRGKMNSKTVTSTMLGVFREDPKTREEFLTLIRS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase/protein binding
molecule keywords GTP Cyclohydrolase I
publication title Crystal structure of the stimulatory complex of GTP cyclohydrolase I and its feedback regulatory protein GFRP.
pubmed doi rcsb
source organism Rattus norvegicus
total genus 63
structure length 192
sequence length 194
chains with identical sequence B, C, D, E, F, G, H, I, J
ec nomenclature ec 3.5.4.16: GTP cyclohydrolase I.
pdb deposition date 2001-11-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01227 GTP_cyclohydroI GTP cyclohydrolase I
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.286.10 Mainly Alpha Orthogonal Bundle GTP Cyclohydrolase I; Chain A, domain 1 GTP Cyclohydrolase I; Chain A, domain 1 1is8A01
3.30.1130.10 Alpha Beta 2-Layer Sandwich GTP Cyclohydrolase I, domain 2 GTP Cyclohydrolase I, domain 2 1is8A02
5F3MA 1RRWA 4IQIA 3UXJA 1NBUC 1WUQA 1B9LA 1RRIA 4GHMA 1N3RA 4DU6A 1SQLA 3R2EA 4UQFA 1WM9A 1RSIA 2O90A 4FGCA 1A8RA 3RZPA 3UXVA 1FB1A 1DHNA 2CG8A 3O1KA 1N3SA 2DHNA 1NBUA 1Z9WA 1N3TA 1RS2A 1NBUB 1RS4A 1RSDA 4AEYA 1GTPA 1FBXA 1RRYA 1IS7A 3S19A 3V9OA 5FARA 4F8BA 2NM3A 1A9CA 1WPLA 3BP1A 3RJ4A 1WURA 1U68A 1IS8A 2NM2A
chains in the Genus database with same CATH superfamily
5F3MA 2WSEK 1RRWA 3UXJA 4E44B 3R2EA 2O90A 3RZPA 3O1KA 4E45B 3LW5G 1NBUA 2KR1A 2WSFG 1RS4A 4AEYA 3B0BC 1RRYA 1IS7A 2WSEG 2LNZA 1WPLA 3BP1A 2WSFK 2NM3A 4IQIA 1WUQA 1EL6A 3BMBA 1B9LA 1SQLA 1RSIA 5DMZA 4R8QA 1DHNA 2CG8A 2P11A 2DHNA 1EFUB 1RS2A 1RSDA 1FBXA 3VEJA 5FARA 4F8BA 1A9CA 1TFEA 1WURA 1IS8A 2LO0A 1NBUC 4NE3B 1RRIA 1WM9A 4FGCA 1FB1A 4DRAE 1N3TA 4DRBJ 1GTPA 3V9OA 3RJ4A 1U68A 2NM2A 4JA3A 2WSCK 4GHMA 1AIPC 1N3RA 4DU6A 4NE5B 4UQFA 1A8RA 3UXVA 4NE6B 1N3SA 1Z9WA 2PN0A 1NBUB 3LW5K 4Q7JA 3S19A 4QPMA 2WSCG 2O01G
chains in the Genus database with same CATH topology
5F3MA 4JA3A 1RRWA 2LO0A 4IQIA 3UXJA 1NBUC 1WUQA 1EL6A 3BMBA 4NE3B 1B9LA 1AIPC 4E44B 1N3RA 4DU6A 4NE5B 1RRIA 1SQLA 3R2EA 4GHMA 1WM9A 4UQFA 1RSIA 2O90A 4FGCA 1A8RA 3RZPA 3UXVA 5DMZA 1FB1A 4R8QA 4NE6B 1DHNA 2CG8A 3O1KA 1N3SA 4DRAE 2P11A 4E45B 2DHNA 1NBUA 1Z9WA 2KR1A 1N3TA 4DRBJ 1EFUB 2PN0A 1RS2A 1NBUB 1RS4A 1RSDA 4AEYA 3B0BC 1GTPA 1FBXA 1RRYA 3VEJA 1IS7A 4Q7JA 2LNZA 3V9OA 3S19A 4QPMA 5FARA 4F8BA 2NM3A 1A9CA 1WPLA 3BP1A 3RJ4A 1TFEA 1WURA 1U68A 1IS8A 2NM2A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5F3M A;  1RRW A;  4IQI A;  3UXJ A;  1NBU C;  1WUQ A;  1B9L A;  1RRI A;  4GHM A;  1N3R A;  4DU6 A;  1SQL A;  3R2E A;  4UQF A;  1WM9 A;  1RSI A;  2O90 A;  4FGC A;  1A8R A;  3RZP A;  3UXV A;  1FB1 A;  1DHN A;  2CG8 A;  3O1K A;  1N3S A;  2DHN A;  1NBU A;  1Z9W A;  1N3T A;  1RS2 A;  1NBU B;  1RS4 A;  1RSD A;  4AEY A;  1GTP A;  1FBX A;  1RRY A;  1IS7 A;  3S19 A;  3V9O A;  5FAR A;  4F8B A;  2NM3 A;  1A9C A;  1WPL A;  3BP1 A;  3RJ4 A;  1WUR A;  1U68 A;  1IS8 A;  2NM2 A; 
#chains in the Genus database with same CATH topology
 5F3M A;  2WSE K;  1RRW A;  3UXJ A;  4E44 B;  3R2E A;  2O90 A;  3RZP A;  3O1K A;  4E45 B;  3LW5 G;  1NBU A;  2KR1 A;  2WSF G;  1RS4 A;  4AEY A;  3B0B C;  1RRY A;  1IS7 A;  2WSE G;  2LNZ A;  1WPL A;  3BP1 A;  2WSF K;  2NM3 A;  4IQI A;  1WUQ A;  1EL6 A;  3BMB A;  1B9L A;  1SQL A;  1RSI A;  5DMZ A;  4R8Q A;  1DHN A;  2CG8 A;  2P11 A;  2DHN A;  1EFU B;  1RS2 A;  1RSD A;  1FBX A;  3VEJ A;  5FAR A;  4F8B A;  1A9C A;  1TFE A;  1WUR A;  1IS8 A;  2LO0 A;  1NBU C;  4NE3 B;  1RRI A;  1WM9 A;  4FGC A;  1FB1 A;  4DRA E;  1N3T A;  4DRB J;  1GTP A;  3V9O A;  3RJ4 A;  1U68 A;  2NM2 A;  4JA3 A;  2WSC K;  4GHM A;  1AIP C;  1N3R A;  4DU6 A;  4NE5 B;  4UQF A;  1A8R A;  3UXV A;  4NE6 B;  1N3S A;  1Z9W A;  2PN0 A;  1NBU B;  3LW5 K;  4Q7J A;  3S19 A;  4QPM A;  2WSC G;  2O01 G; 
#chains in the Genus database with same CATH homology
 5F3M A;  4JA3 A;  1RRW A;  2LO0 A;  4IQI A;  3UXJ A;  1NBU C;  1WUQ A;  1EL6 A;  3BMB A;  4NE3 B;  1B9L A;  1AIP C;  4E44 B;  1N3R A;  4DU6 A;  4NE5 B;  1RRI A;  1SQL A;  3R2E A;  4GHM A;  1WM9 A;  4UQF A;  1RSI A;  2O90 A;  4FGC A;  1A8R A;  3RZP A;  3UXV A;  5DMZ A;  1FB1 A;  4R8Q A;  4NE6 B;  1DHN A;  2CG8 A;  3O1K A;  1N3S A;  4DRA E;  2P11 A;  4E45 B;  2DHN A;  1NBU A;  1Z9W A;  2KR1 A;  1N3T A;  4DRB J;  1EFU B;  2PN0 A;  1RS2 A;  1NBU B;  1RS4 A;  1RSD A;  4AEY A;  3B0B C;  1GTP A;  1FBX A;  1RRY A;  3VEJ A;  1IS7 A;  4Q7J A;  2LNZ A;  3V9O A;  3S19 A;  4QPM A;  5FAR A;  4F8B A;  2NM3 A;  1A9C A;  1WPL A;  3BP1 A;  3RJ4 A;  1TFE A;  1WUR A;  1U68 A;  1IS8 A;  2NM2 A; 
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similar chains in the pdb database (?% sequence similarity)

 
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