1IU3C

Crystal structure of the e.coli seqa protein complexed with hemimethylated dna
Total Genus 35
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
35
sequence length
115
structure length
115
Chain Sequence
PLGSAMRELLLSDEYAEQKRAVNRFMLLLSTLYSLDAQAFAEATESLHGRTRVYFAADEQTLLKNGNQTKPKHVPGTPYWVITNTNTGRKCSMIEHIMQSMQFPAELIEKVCGTI
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Replication inhibitor/dna
molecule keywords 5'-D(*AP*AP*GP*GP*AP*TP*CP*CP*AP*A)-3'
publication title Structural and biochemical analyses of hemimethylated DNA binding by the SeqA protein.
pubmed doi rcsb
source organism Escherichia coli
total genus 35
structure length 115
sequence length 115
chains with identical sequence F
ec nomenclature
pdb deposition date 2002-02-26
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1380.10 Mainly Alpha Up-down Bundle Replication modulator SeqA, C-terminal DNA-binding domain Replication modulator SeqA, C-terminal DNA-binding domain 1iu3C00
3SK7A 3FMTA 1IU3C 1LRRA 1J3EA
chains in the Genus database with same CATH superfamily
3SK7A 3FMTA 1IU3C 1LRRA 1J3EA 2MEMA
chains in the Genus database with same CATH topology
3SK7A 3FMTA 1IU3C 1LRRA 1J3EA 2MEMA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3SK7 A;  3FMT A;  1IU3 C;  1LRR A;  1J3E A; 
#chains in the Genus database with same CATH topology
 3SK7 A;  3FMT A;  1IU3 C;  1LRR A;  1J3E A;  2MEM A; 
#chains in the Genus database with same CATH homology
 3SK7 A;  3FMT A;  1IU3 C;  1LRR A;  1J3E A;  2MEM A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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