1IUQA

The 1.55 a crystal structure of glycerol-3-phosphate acyltransferase
Total Genus 113
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
113
sequence length
367
structure length
357
Chain Sequence
b'ASHSRKFLDVRSEEELLSCIKKETEAGKLPPNVAAGMEELYQNYRNAVIESGNPKADEIVLSNMTVALDRILLDVEDPFVFSSHHKAIREPFDYYIFGQNYIRPLIDFGNSFVGNLSLFKDIEEKLQQGHNVVLISNHQTEADPAIISLLLEKTNPYIAENTIFVAGDRVLADPLCKPFSIGRNLICVYSKKHMFDIPELTETKRKANTRSLKEMALLLRGGSQLIWIAPSGGRDRPDPSTGEWYPAPFDASSVDNMRRLIQHSDVPGHLFPLALLCHDIMPPPRVIAFNGAGLSVAPEISFEEIAATHKNPEEVREAYSKALFDSVAMQYNVLKTAISGKQGLGASTADVSLSQPW'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Substrate recognition and selectivity of plant glycerol-3-phosphate acyltransferases (GPATs) from Cucurbita moscata and Spinacea oleracea.
pubmed doi rcsb
molecule keywords Glycerol-3-Phosphate Acyltransferase
source organism Cucurbita moschata
molecule tags Transferase
total genus 113
structure length 357
sequence length 367
ec nomenclature ec 2.3.1.15: Glycerol-3-phosphate 1-O-acyltransferase.
pdb deposition date 2002-03-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01553 Acyltransferase Acyltransferase
A PF14829 GPAT_N Glycerol-3-phosphate acyltransferase N-terminal
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1200.50 Mainly Alpha Orthogonal Bundle Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A 1iuqA01
3.40.1130.10 Alpha Beta 3-Layer(aba) Sandwich Glycerol-3-phosphate (1)-acyltransferase Glycerol-3-phosphate (1)-acyltransferase 1iuqA02
1K30A 1IUQA
chains in the Genus database with same CATH superfamily
2QEXP 3G1IA 1QVFO 2MVVA 3CXCO 2L4BA 1RO2A 2FQ1A 3H0DA 2JQ4A 2M8PA 2EIAA 1EOQA 2VLPA 1VKUA 3CCUP 5HGNA 2CGQA 1YI2P 2JU2A 2MVUA 1RO0A 2QA4P 2WPTA 2JYLA 3LMOA 1Z6MA 3G29A 2PEQA 3OW2O 2LL8A 3CCQP 2KG8A 2PEIA 1GPJA 2XZ0D 4PH1A 2FVEA 1GXGA 2GZJA 3CCEP 2KOSA 1CEIA 1MZ8A 2JAZA 2Z44A 2CWOA 3G71P 4QKOA 3NTEA 1KC8Q 3GJNA 2MR7A 3DPHA 1YJ9P 1YJNP 3GZLA 2K5XA 3GZMA 2FHSC 1UNKA 4U0BA 2K0DX 1AUMA 3B4QA 4PXHB 2PEMA 2AFDA 2LMLA 2XXMA 3HZQA 2L6EA 3CD6P 2BUOA 4GR2A 2N5IA 3G6EP 2FQ0A 2P9XA 5F2OA 2K0XA 5EJDA 2PNGA 3CCJP 5F2KA 3EJBA 1VQ6P 2M5RA 1M6EX 3LRYA 3Q20A 2XT1A 1Q81Q 5HGMA 3B5IA 1JJ2O 3EJDA 3M1MA 2AVAA 1Q86Q 1DV5A 2PY8A 2PEOA 4XROA 1VQPP 1L0IA 2DGYA 2EFJA 2K94A 2GDYA 3RG2A 4U0CA 2EHTA 3G26A 5HGOA 2CG5B 2FACA 1VHNA 4BPFA 4GR6A 3I56P 2QNWA 3CCVP 2K0YA 5HGLA 1F80D 1ACPA 4BPGA 1IMPA 4PWVB 1EMVA 1IMQA 3DS5A 1VQ5P 2LIWA 7CEIA 1M74A 5KP6B 3E2DA 4COCA 3G0VA 1YIJP 2KGEA 5KP7B 2GZEA 2N50A 3G1GA 4HKGA 1VQLP 4PH0A 3G21A 2GYKA 2FQ2A 2AFEA 3CC2P 5CZDB 2OARA 3CMAP 2LTEA 2KGAA 2VSQA 1E0HA 2N6YA 2N98A 2JU1A 1ZNVA 2Z45A 1NQ4A 2L0QA 2LIUA 2K2QA 3G4SP 2PEJA 2GZFA 2X2BA 3CE7A 4COPA 2XV6A 3H4EA 2KGDA 2CNRA 2JYGA 2Z46A 3EJEA 4XFXA 1K9MQ 2K92A 2FVAA 3CC4P 2MY5A 1NJIQ 4U0AA 4IZ6A 5DCKA 3WBHA 2VLOA 1VQOP 2KOQA 2PENA 2FAEA 2XZ1C 1E6JP 1KD1Q 1VQ7P 1T8KA 2MD9A 3CCLP 1VQ4P 1AYIA 5I4TG 2KOPA 1AF8A 1EIAA 1M90Q 2KGCA 3MGEA 1M6NA 3CCRP 2JO0A 1K73Q 1GXHA 2FVFA 4QNBA 2ERHA 3P05A 3DS2A 2CQ8A 2KWLA 1N8RQ 1BXIA 4NEOA 1Q82Q 1VQKP 2FADA 5HVCA 2LKIA 1W2BO 3VRLC 2KR5A 2GDXA 4CA3A 2DNWA 3CMEP 1RNIA 2LF4A 2N5HA 1QVGO 2JB0A 1VQMP 1YITP 5EW5E 2OTJP 2MF4A 1UJZA 3CC7P 3CCMP 4XRQA 2M8NA 5BS1A 3RG6C 2PEKA 5JPAA 2MR8A 2JGPA 3DS4A 4U0EA 5HV8A 1K8AQ 2N6ZA 1L0HA 3U43A 4U0FA 2GDWA 2L22A 2ONTA 4H2YC 3GKLC 3DS0A 4XFYA 4XFZA 4UHPB 2L9FA 2OTLP 2NO8A 3DS1A 2KW2A 1BAJA 3HYBA 1HQBA 1HY8A 2LOLA 4WYMA 4H2WC 2LPKA 2ROQA 1X3OA 1D1DA 2VLNA 3CCSP 2VLQA 4IPYA 2EHSA 2EG5A 1VQ8P 5KP8B 1VQNP 2M8LA 1ZMBA 2AF8A 1M1KQ 1YHQP 4U0DA 1IUQA 2KORA 1YJWP 4DG9A 2KG9A 3G28A 1QRJA 1K30A 5BS2A 2GZIA 2GZGA 4BPHA 1A43A 1FR2A 2K93A 1A8OA 1S72P 4M0IA 3CPWO 2JBGA 2E1MA 4R0MA 1OR5A 1Q7YQ 3DTJA 3NY7B 5F2NA 1KLPA 2KG6A 3I55P 4F37A 1DNYA 1VQ9P 1KQSO 2KOOA 2KODA 3H47A 2BHVA 4MRTC 4H2XC 3DS3A
chains in the Genus database with same CATH topology
3H4EA 3Q20A 2QEXP 5JPAA 3G1IA 1QVFO 2JYGA 3CXCO 2XT1A 1Q81Q 3DS4A 5HGMA 1RO2A 2Z46A 3B5IA 4U0EA 1K8AQ 3H0DA 1JJ2O 4XFXA 3M1MA 1K9MQ 2M8PA 2EIAA 1Q86Q 4U0FA 1EOQA 3CCUP 5HGNA 3CC4P 2PY8A 2PEOA 2ONTA 1NJIQ 4XROA 4U0AA 1VQPP 3DS0A 4XFYA 5DCKA 4XFZA 1YI2P 3WBHA 2DGYA 2EFJA 2OTLP 3DS1A 1RO0A 1VQOP 1BAJA 4U0CA 3HYBA 2PENA 2QA4P 3G26A 4WYMA 5HGOA 2JYLA 1E6JP 1KD1Q 3G29A 1VQ7P 4GR6A 3I56P 2PEQA 3OW2O 3CCLP 1D1DA 1VQ4P 3CCVP 3CCQP 5I4TG 5HGLA 1EIAA 3CCSP 4IPYA 2PEIA 1M90Q 2EG5A 3MGEA 1M6NA 3CCRP 2JO0A 1VQ8P 1K73Q 1VQNP 2M8LA 4PH1A 3DS5A 1VQ5P 1ZMBA 4QNBA 3P05A 3DS2A 1M1KQ 1YHQP 4U0DA 1IUQA 3CCEP 1YJWP 1M74A 1N8RQ 3E2DA 4COCA 3G0VA 1YIJP 1Q82Q 1VQKP 2Z44A 3G28A 1QRJA 1K30A 3G1GA 2CWOA 5BS2A 3G71P 1VQLP 3NTEA 3VRLC 1W2BO 4PH0A 1YJ9P 3G21A 3DPHA 1A43A 1KC8Q 1YJNP 2PEKA 1A8OA 3CMEP 1S72P 1RNIA 4M0IA 3CPWO 2LF4A 4U0BA 3CC2P 1QVGO 1AUMA 2OARA 3CMAP 1VQMP 2E1MA 2PEMA 1YITP 2XXMA 3HZQA 1Q7YQ 3DTJA 2L6EA 5F2NA 3I55P 2BUOA 4GR2A 3CD6P 2OTJP 1VQ9P 1KQSO 2Z45A 3G6EP 5F2OA 2P9XA 2KODA 3CC7P 3H47A 2PEJA 4XRQA 3G4SP 3CCJP 3CCMP 5F2KA 2M8NA 4COPA 2BHVA 1VQ6P 5BS1A 1M6EX 3RG6C 3LRYA 2XV6A 3DS3A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1K30 A;  1IUQ A; 
#chains in the Genus database with same CATH topology
 2QEX P;  3G1I A;  1QVF O;  2MVV A;  3CXC O;  2L4B A;  1RO2 A;  2FQ1 A;  3H0D A;  2JQ4 A;  2M8P A;  2EIA A;  1EOQ A;  2VLP A;  1VKU A;  3CCU P;  5HGN A;  2CGQ A;  1YI2 P;  2JU2 A;  2MVU A;  1RO0 A;  2QA4 P;  2WPT A;  2JYL A;  3LMO A;  1Z6M A;  3G29 A;  2PEQ A;  3OW2 O;  2LL8 A;  3CCQ P;  2KG8 A;  2PEI A;  1GPJ A;  2XZ0 D;  4PH1 A;  2FVE A;  1GXG A;  2GZJ A;  3CCE P;  2KOS A;  1CEI A;  1MZ8 A;  2JAZ A;  2Z44 A;  2CWO A;  3G71 P;  4QKO A;  3NTE A;  1KC8 Q;  3GJN A;  2MR7 A;  3DPH A;  1YJ9 P;  1YJN P;  3GZL A;  2K5X A;  3GZM A;  2FHS C;  1UNK A;  4U0B A;  2K0D X;  1AUM A;  3B4Q A;  4PXH B;  2PEM A;  2AFD A;  2LML A;  2XXM A;  3HZQ A;  2L6E A;  3CD6 P;  2BUO A;  4GR2 A;  2N5I A;  3G6E P;  2FQ0 A;  2P9X A;  5F2O A;  2K0X A;  5EJD A;  2PNG A;  3CCJ P;  5F2K A;  3EJB A;  1VQ6 P;  2M5R A;  1M6E X;  3LRY A;  3Q20 A;  2XT1 A;  1Q81 Q;  5HGM A;  3B5I A;  1JJ2 O;  3EJD A;  3M1M A;  2AVA A;  1Q86 Q;  1DV5 A;  2PY8 A;  2PEO A;  4XRO A;  1VQP P;  1L0I A;  2DGY A;  2EFJ A;  2K94 A;  2GDY A;  3RG2 A;  4U0C A;  2EHT A;  3G26 A;  5HGO A;  2CG5 B;  2FAC A;  1VHN A;  4BPF A;  4GR6 A;  3I56 P;  2QNW A;  3CCV P;  2K0Y A;  5HGL A;  1F80 D;  1ACP A;  4BPG A;  1IMP A;  4PWV B;  1EMV A;  1IMQ A;  3DS5 A;  1VQ5 P;  2LIW A;  7CEI A;  1M74 A;  5KP6 B;  3E2D A;  4COC A;  3G0V A;  1YIJ P;  2KGE A;  5KP7 B;  2GZE A;  2N50 A;  3G1G A;  4HKG A;  1VQL P;  4PH0 A;  3G21 A;  2GYK A;  2FQ2 A;  2AFE A;  3CC2 P;  5CZD B;  2OAR A;  3CMA P;  2LTE A;  2KGA A;  2VSQ A;  1E0H A;  2N6Y A;  2N98 A;  2JU1 A;  1ZNV A;  2Z45 A;  1NQ4 A;  2L0Q A;  2LIU A;  2K2Q A;  3G4S P;  2PEJ A;  2GZF A;  2X2B A;  3CE7 A;  4COP A;  2XV6 A;  3H4E A;  2KGD A;  2CNR A;  2JYG A;  2Z46 A;  3EJE A;  4XFX A;  1K9M Q;  2K92 A;  2FVA A;  3CC4 P;  2MY5 A;  1NJI Q;  4U0A A;  4IZ6 A;  5DCK A;  3WBH A;  2VLO A;  1VQO P;  2KOQ A;  2PEN A;  2FAE A;  2XZ1 C;  1E6J P;  1KD1 Q;  1VQ7 P;  1T8K A;  2MD9 A;  3CCL P;  1VQ4 P;  1AYI A;  5I4T G;  2KOP A;  1AF8 A;  1EIA A;  1M90 Q;  2KGC A;  3MGE A;  1M6N A;  3CCR P;  2JO0 A;  1K73 Q;  1GXH A;  2FVF A;  4QNB A;  2ERH A;  3P05 A;  3DS2 A;  2CQ8 A;  2KWL A;  1N8R Q;  1BXI A;  4NEO A;  1Q82 Q;  1VQK P;  2FAD A;  5HVC A;  2LKI A;  1W2B O;  3VRL C;  2KR5 A;  2GDX A;  4CA3 A;  2DNW A;  3CME P;  1RNI A;  2LF4 A;  2N5H A;  1QVG O;  2JB0 A;  1VQM P;  1YIT P;  5EW5 E;  2OTJ P;  2MF4 A;  1UJZ A;  3CC7 P;  3CCM P;  4XRQ A;  2M8N A;  5BS1 A;  3RG6 C;  2PEK A;  5JPA A;  2MR8 A;  2JGP A;  3DS4 A;  4U0E A;  5HV8 A;  1K8A Q;  2N6Z A;  1L0H A;  3U43 A;  4U0F A;  2GDW A;  2L22 A;  2ONT A;  4H2Y C;  3GKL C;  3DS0 A;  4XFY A;  4XFZ A;  4UHP B;  2L9F A;  2OTL P;  2NO8 A;  3DS1 A;  2KW2 A;  1BAJ A;  3HYB A;  1HQB A;  1HY8 A;  2LOL A;  4WYM A;  4H2W C;  2LPK A;  2ROQ A;  1X3O A;  1D1D A;  2VLN A;  3CCS P;  2VLQ A;  4IPY A;  2EHS A;  2EG5 A;  1VQ8 P;  5KP8 B;  1VQN P;  2M8L A;  1ZMB A;  2AF8 A;  1M1K Q;  1YHQ P;  4U0D A;  1IUQ A;  2KOR A;  1YJW P;  4DG9 A;  2KG9 A;  3G28 A;  1QRJ A;  1K30 A;  5BS2 A;  2GZI A;  2GZG A;  4BPH A;  1A43 A;  1FR2 A;  2K93 A;  1A8O A;  1S72 P;  4M0I A;  3CPW O;  2JBG A;  2E1M A;  4R0M A;  1OR5 A;  1Q7Y Q;  3DTJ A;  3NY7 B;  5F2N A;  1KLP A;  2KG6 A;  3I55 P;  4F37 A;  1DNY A;  1VQ9 P;  1KQS O;  2KOO A;  2KOD A;  3H47 A;  2BHV A;  4MRT C;  4H2X C;  3DS3 A; 
#chains in the Genus database with same CATH homology
 3H4E A;  3Q20 A;  2QEX P;  5JPA A;  3G1I A;  1QVF O;  2JYG A;  3CXC O;  2XT1 A;  1Q81 Q;  3DS4 A;  5HGM A;  1RO2 A;  2Z46 A;  3B5I A;  4U0E A;  1K8A Q;  3H0D A;  1JJ2 O;  4XFX A;  3M1M A;  1K9M Q;  2M8P A;  2EIA A;  1Q86 Q;  4U0F A;  1EOQ A;  3CCU P;  5HGN A;  3CC4 P;  2PY8 A;  2PEO A;  2ONT A;  1NJI Q;  4XRO A;  4U0A A;  1VQP P;  3DS0 A;  4XFY A;  5DCK A;  4XFZ A;  1YI2 P;  3WBH A;  2DGY A;  2EFJ A;  2OTL P;  3DS1 A;  1RO0 A;  1VQO P;  1BAJ A;  4U0C A;  3HYB A;  2PEN A;  2QA4 P;  3G26 A;  4WYM A;  5HGO A;  2JYL A;  1E6J P;  1KD1 Q;  3G29 A;  1VQ7 P;  4GR6 A;  3I56 P;  2PEQ A;  3OW2 O;  3CCL P;  1D1D A;  1VQ4 P;  3CCV P;  3CCQ P;  5I4T G;  5HGL A;  1EIA A;  3CCS P;  4IPY A;  2PEI A;  1M90 Q;  2EG5 A;  3MGE A;  1M6N A;  3CCR P;  2JO0 A;  1VQ8 P;  1K73 Q;  1VQN P;  2M8L A;  4PH1 A;  3DS5 A;  1VQ5 P;  1ZMB A;  4QNB A;  3P05 A;  3DS2 A;  1M1K Q;  1YHQ P;  4U0D A;  1IUQ A;  3CCE P;  1YJW P;  1M74 A;  1N8R Q;  3E2D A;  4COC A;  3G0V A;  1YIJ P;  1Q82 Q;  1VQK P;  2Z44 A;  3G28 A;  1QRJ A;  1K30 A;  3G1G A;  2CWO A;  5BS2 A;  3G71 P;  1VQL P;  3NTE A;  3VRL C;  1W2B O;  4PH0 A;  1YJ9 P;  3G21 A;  3DPH A;  1A43 A;  1KC8 Q;  1YJN P;  2PEK A;  1A8O A;  3CME P;  1S72 P;  1RNI A;  4M0I A;  3CPW O;  2LF4 A;  4U0B A;  3CC2 P;  1QVG O;  1AUM A;  2OAR A;  3CMA P;  1VQM P;  2E1M A;  2PEM A;  1YIT P;  2XXM A;  3HZQ A;  1Q7Y Q;  3DTJ A;  2L6E A;  5F2N A;  3I55 P;  2BUO A;  4GR2 A;  3CD6 P;  2OTJ P;  1VQ9 P;  1KQS O;  2Z45 A;  3G6E P;  5F2O A;  2P9X A;  2KOD A;  3CC7 P;  3H47 A;  2PEJ A;  4XRQ A;  3G4S P;  3CCJ P;  3CCM P;  5F2K A;  2M8N A;  4COP A;  2BHV A;  1VQ6 P;  5BS1 A;  1M6E X;  3RG6 C;  3LRY A;  2XV6 A;  3DS3 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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