1IUQA

The 1.55 a crystal structure of glycerol-3-phosphate acyltransferase
Total Genus 113
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
113
sequence length
367
structure length
357
Chain Sequence
ASHSRKFLDVRSEEELLSCIKKETEAGKLPPNVAAGMEELYQNYRNAVIESGNPKADEIVLSNMTVALDRILLDVEDPFVFSSHHKAIREPFDYYIFGQNYIRPLIDFGNSFVGNLSLFKDIEEKLQQGHNVVLISNHQTEADPAIISLLLEKTNPYIAENTIFVAGDRVLADPLCKPFSIGRNLICVYSKKHMFDIPELTETKRKANTRSLKEMALLLRGGSQLIWIAPSGGRDRPDPSTGEWYPAPFDASSVDNMRRLIQHSDVPGHLFPLALLCHDIMPPPRVIAFNGAGLSVAPEISFEEIAATHKNPEEVREAYSKALFDSVAMQYNVLKTAISGKQGLGASTADVSLSQPW
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
source organism Cucurbita moschata
publication title Substrate recognition and selectivity of plant glycerol-3-phosphate acyltransferases (GPATs) from Cucurbita moscata and Spinacea oleracea.
pubmed doi rcsb
molecule keywords Glycerol-3-Phosphate Acyltransferase
total genus 113
structure length 357
sequence length 367
ec nomenclature ec 2.3.1.15: Glycerol-3-phosphate 1-O-acyltransferase.
pdb deposition date 2002-03-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01553 Acyltransferase Acyltransferase
A PF14829 GPAT_N Glycerol-3-phosphate acyltransferase N-terminal
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1200.50 Mainly Alpha Orthogonal Bundle Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A 1iuqA01
3.40.1130.10 Alpha Beta 3-Layer(aba) Sandwich Glycerol-3-phosphate (1)-acyltransferase Glycerol-3-phosphate (1)-acyltransferase 1iuqA02
1IUQA 1K30A
chains in the Genus database with same CATH superfamily
1S72P 1YITP 2FADA 2AVAA 2GDYA 2GZFA 3CC7P 2CG5B 3NY7B 1K8AQ 1VQ5P 3U43A 3CCRP 2P9XA 5I4TG 3LMOA 1A8OA 3EJDA 4PH1A 5F2OA 2LL8A 2EG5A 2KGDA 2KG6A 3G4SP 2AFEA 3RG6C 1RNIA 3G26A 2OTLP 2KGEA 5BS2A 2AFDA 5F2KA 2XZ0D 2BHVA 2XZ1C 1VQ9P 3CCQP 2MY5A 1VQPP 3CCUP 4U0FA 2XT1A 2PEQA 2N5IA 1GXGA 1VQOP 4H2WC 2AF8A 3B5IA 2OTJP 4R0MA 3CD6P 1Z6MA 1M6EX 1UNKA 3HYBA 4NEOA 2N6YA 2OARA 3G0VA 1YI2P 1ACPA 4QNBA 2PY8A 2QA4P 3CC4P 4H2YC 1VQMP 2VSQA 2E1MA 2EIAA 5CZDB 3CCJP 2GYKA 2GZGA 4GR2A 2ONTA 2Z46A 3VRLC 3CCVP 4COPA 2FQ0A 2JBGA 1K30A 1HQBA 5KP8B 2QEXP 3H47A 1VKUA 3DPHA 4BPFA 2K0YA 2LIWA 1RO2A 2CQ8A 3DS3A 3CCMP 1IUQA 2MF4A 3DS1A 4BPGA 2L9FA 1DNYA 1GPJA 5EW5E 2PEJA 1BXIA 1QVGO 2MD9A 3EJEA 1MZ8A 2BUOA 2KGCA 2LF4A 2WPTA 2KOPA 1DV5A 5F2NA 4DG9A 2PEOA 2K92A 4CA3A 2L22A 2JB0A 3G1GA 2JU1A 2MVVA 3WBHA 1NJIQ 2PEMA 7CEIA 1UJZA 3RG2A 1ZNVA 3CCEP 2FQ2A 2GZIA 2NO8A 1VQLP 3MGEA 1M1KQ 3HZQA 2PENA 1QVFO 4WYMA 2XV6A 1GXHA 2FACA 1K9MQ 2K0DX 1HY8A 2GZJA 2N50A 1KQSO 2KODA 2K2QA 2VLOA 5HGLA 2M8PA 5KP7B 1L0IA 3CMEP 1AF8A 4XFYA 2KOQA 1M74A 5HV8A 2XXMA 2M8NA 1NQ4A 4H2XC 1YJNP 4U0DA 1YIJP 1JJ2O 2VLPA 1EOQA 3CMAP 4PH0A 2M8LA 1VQ7P 1A43A 4PXHB 2KGAA 2N98A 2JYLA 1YJWP 1Q7YQ 3I55P 2KWLA 1E6JP 4IPYA 2PEIA 2Z45A 2N6ZA 2FAEA 1YHQP 2Z44A 4XFXA 2FHSC 3G71P 2JO0A 2MR8A 2L4BA 4COCA 2MVUA 1AUMA 2JGPA 3CC2P 2KG9A 4QKOA 5EJDA 5HGNA 1KLPA 1EIAA 2VLNA 1IMPA 1F80D 4BPHA 3G29A 5JPAA 4U0AA 1Q86Q 3DTJA 2K5XA 3M1MA 5HVCA 1Q81Q 3G28A 3DS5A 2ROQA 2KORA 3GJNA 3G1IA 3GKLC 1M6NA 2EHSA 4U0CA 3LRYA 4U0EA 1AYIA 5KP6B 4HKGA 2MR7A 2CWOA 1X3OA 3DS2A 2K94A 4GR6A 1BAJA 2FVFA 4IZ6A 1K73Q 2KW2A 1ZMBA 2X2BA 2L6EA 1IMQA 1VQ4P 1CEIA 2K0XA 2KOOA 2FVEA 2JQ4A 1E0HA 3E2DA 1KD1Q 4XROA 4U0BA 3GZLA 1VHNA 2FQ1A 4XFZA 3GZMA 3CCSP 1W2BO 1D1DA 1N8RQ 2LPKA 1YJ9P 2FVAA 1EMVA 3EJBA 3H0DA 2PEKA 2JU2A 1RO0A 3CPWO 1L0HA 2VLQA 1KC8Q 3NTEA 5HGOA 3DS4A 2L0QA 3G6EP 2JYGA 4PWVB 2QNWA 2PNGA 5BS1A 2M5RA 3B4QA 3P05A 5DCKA 2LOLA 2EHTA 2CGQA 3H4EA 3CXCO 4XRQA 2GDWA 4F37A 1Q82Q 2EFJA 1QRJA 2CNRA 5HGMA 1VQNP 1VQ8P 2ERHA 2GDXA 3DS0A 3CE7A 2KR5A 4MRTC 3OW2O 1M90Q 2N5HA 2KG8A 2DNWA 3Q20A 2K93A 2LMLA 4M0IA 2LKIA 2DGYA 1T8KA 1OR5A 3CCLP 2GZEA 3I56P 1FR2A 2KOSA 4UHPB 1VQKP 2LIUA 2LTEA 2JAZA 3G21A 1VQ6P
chains in the Genus database with same CATH topology
1S72P 2M8NA 1YITP 1YJNP 4U0DA 1K30A 1YIJP 3CC7P 1JJ2O 1VQ4P 1EOQA 3CMAP 1K8AQ 4PH0A 2QEXP 1VQ5P 3H47A 2M8LA 3DPHA 1VQ7P 3CCRP 2P9XA 1A43A 5I4TG 1RO2A 1A8OA 3E2DA 1KD1Q 4PH1A 4XROA 3DS3A 2JYLA 1IUQA 4U0BA 3CCMP 1YJWP 1Q7YQ 3DS1A 5F2OA 3I55P 1E6JP 2EG5A 4XFZA 4IPYA 2PEIA 3CCSP 2Z45A 1W2BO 1D1DA 1N8RQ 2PEJA 1QVGO 1YHQP 2Z44A 4XFXA 1YJ9P 2BUOA 3G4SP 3H0DA 3G71P 2PEKA 2JO0A 2LF4A 1RO0A 3CPWO 3RG6C 4COCA 1RNIA 3G26A 2OTLP 5BS2A 1AUMA 1KC8Q 3CC2P 3NTEA 5HGOA 5F2KA 2BHVA 5HGNA 1EIAA 3DS4A 1VQ9P 3CCQP 5F2NA 3G6EP 2JYGA 2PEOA 1VQPP 3CCUP 3G29A 4U0FA 5JPAA 2XT1A 3G1GA 2PEQA 5BS1A 4U0AA 5DCKA 3P05A 1Q86Q 3DTJA 3H4EA 3WBHA 3CXCO 1NJIQ 2PEMA 4XRQA 3M1MA 1Q82Q 1VQOP 1Q81Q 2EFJA 1QRJA 3B5IA 3G28A 5HGMA 2OTJP 3DS5A 1VQNP 1VQ8P 3CCEP 3G1IA 1VQLP 3MGEA 1M6NA 3CD6P 3DS0A 4U0CA 3LRYA 3HZQA 4U0EA 3OW2O 2PENA 1M1KQ 1M90Q 1M6EX 3HYBA 1QVFO 2CWOA 3Q20A 3DS2A 4WYMA 2XV6A 2OARA 4M0IA 3G0VA 1K9MQ 4GR6A 1YI2P 2DGYA 1BAJA 4QNBA 1KQSO 2KODA 2PY8A 3CCLP 2QA4P 3I56P 3CC4P 1K73Q 1VQMP 5HGLA 2M8PA 1ZMBA 2E1MA 2EIAA 3CCJP 1VQKP 3CMEP 2L6EA 2ONTA 2Z46A 4GR2A 4XFYA 3VRLC 1M74A 3G21A 3CCVP 4COPA 1VQ6P 2XXMA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1IUQ A;  1K30 A; 
#chains in the Genus database with same CATH topology
 1S72 P;  1YIT P;  2FAD A;  2AVA A;  2GDY A;  2GZF A;  3CC7 P;  2CG5 B;  3NY7 B;  1K8A Q;  1VQ5 P;  3U43 A;  3CCR P;  2P9X A;  5I4T G;  3LMO A;  1A8O A;  3EJD A;  4PH1 A;  5F2O A;  2LL8 A;  2EG5 A;  2KGD A;  2KG6 A;  3G4S P;  2AFE A;  3RG6 C;  1RNI A;  3G26 A;  2OTL P;  2KGE A;  5BS2 A;  2AFD A;  5F2K A;  2XZ0 D;  2BHV A;  2XZ1 C;  1VQ9 P;  3CCQ P;  2MY5 A;  1VQP P;  3CCU P;  4U0F A;  2XT1 A;  2PEQ A;  2N5I A;  1GXG A;  1VQO P;  4H2W C;  2AF8 A;  3B5I A;  2OTJ P;  4R0M A;  3CD6 P;  1Z6M A;  1M6E X;  1UNK A;  3HYB A;  4NEO A;  2N6Y A;  2OAR A;  3G0V A;  1YI2 P;  1ACP A;  4QNB A;  2PY8 A;  2QA4 P;  3CC4 P;  4H2Y C;  1VQM P;  2VSQ A;  2E1M A;  2EIA A;  5CZD B;  3CCJ P;  2GYK A;  2GZG A;  4GR2 A;  2ONT A;  2Z46 A;  3VRL C;  3CCV P;  4COP A;  2FQ0 A;  2JBG A;  1K30 A;  1HQB A;  5KP8 B;  2QEX P;  3H47 A;  1VKU A;  3DPH A;  4BPF A;  2K0Y A;  2LIW A;  1RO2 A;  2CQ8 A;  3DS3 A;  3CCM P;  1IUQ A;  2MF4 A;  3DS1 A;  4BPG A;  2L9F A;  1DNY A;  1GPJ A;  5EW5 E;  2PEJ A;  1BXI A;  1QVG O;  2MD9 A;  3EJE A;  1MZ8 A;  2BUO A;  2KGC A;  2LF4 A;  2WPT A;  2KOP A;  1DV5 A;  5F2N A;  4DG9 A;  2PEO A;  2K92 A;  4CA3 A;  2L22 A;  2JB0 A;  3G1G A;  2JU1 A;  2MVV A;  3WBH A;  1NJI Q;  2PEM A;  7CEI A;  1UJZ A;  3RG2 A;  1ZNV A;  3CCE P;  2FQ2 A;  2GZI A;  2NO8 A;  1VQL P;  3MGE A;  1M1K Q;  3HZQ A;  2PEN A;  1QVF O;  4WYM A;  2XV6 A;  1GXH A;  2FAC A;  1K9M Q;  2K0D X;  1HY8 A;  2GZJ A;  2N50 A;  1KQS O;  2KOD A;  2K2Q A;  2VLO A;  5HGL A;  2M8P A;  5KP7 B;  1L0I A;  3CME P;  1AF8 A;  4XFY A;  2KOQ A;  1M74 A;  5HV8 A;  2XXM A;  2M8N A;  1NQ4 A;  4H2X C;  1YJN P;  4U0D A;  1YIJ P;  1JJ2 O;  2VLP A;  1EOQ A;  3CMA P;  4PH0 A;  2M8L A;  1VQ7 P;  1A43 A;  4PXH B;  2KGA A;  2N98 A;  2JYL A;  1YJW P;  1Q7Y Q;  3I55 P;  2KWL A;  1E6J P;  4IPY A;  2PEI A;  2Z45 A;  2N6Z A;  2FAE A;  1YHQ P;  2Z44 A;  4XFX A;  2FHS C;  3G71 P;  2JO0 A;  2MR8 A;  2L4B A;  4COC A;  2MVU A;  1AUM A;  2JGP A;  3CC2 P;  2KG9 A;  4QKO A;  5EJD A;  5HGN A;  1KLP A;  1EIA A;  2VLN A;  1IMP A;  1F80 D;  4BPH A;  3G29 A;  5JPA A;  4U0A A;  1Q86 Q;  3DTJ A;  2K5X A;  3M1M A;  5HVC A;  1Q81 Q;  3G28 A;  3DS5 A;  2ROQ A;  2KOR A;  3GJN A;  3G1I A;  3GKL C;  1M6N A;  2EHS A;  4U0C A;  3LRY A;  4U0E A;  1AYI A;  5KP6 B;  4HKG A;  2MR7 A;  2CWO A;  1X3O A;  3DS2 A;  2K94 A;  4GR6 A;  1BAJ A;  2FVF A;  4IZ6 A;  1K73 Q;  2KW2 A;  1ZMB A;  2X2B A;  2L6E A;  1IMQ A;  1VQ4 P;  1CEI A;  2K0X A;  2KOO A;  2FVE A;  2JQ4 A;  1E0H A;  3E2D A;  1KD1 Q;  4XRO A;  4U0B A;  3GZL A;  1VHN A;  2FQ1 A;  4XFZ A;  3GZM A;  3CCS P;  1W2B O;  1D1D A;  1N8R Q;  2LPK A;  1YJ9 P;  2FVA A;  1EMV A;  3EJB A;  3H0D A;  2PEK A;  2JU2 A;  1RO0 A;  3CPW O;  1L0H A;  2VLQ A;  1KC8 Q;  3NTE A;  5HGO A;  3DS4 A;  2L0Q A;  3G6E P;  2JYG A;  4PWV B;  2QNW A;  2PNG A;  5BS1 A;  2M5R A;  3B4Q A;  3P05 A;  5DCK A;  2LOL A;  2EHT A;  2CGQ A;  3H4E A;  3CXC O;  4XRQ A;  2GDW A;  4F37 A;  1Q82 Q;  2EFJ A;  1QRJ A;  2CNR A;  5HGM A;  1VQN P;  1VQ8 P;  2ERH A;  2GDX A;  3DS0 A;  3CE7 A;  2KR5 A;  4MRT C;  3OW2 O;  1M90 Q;  2N5H A;  2KG8 A;  2DNW A;  3Q20 A;  2K93 A;  2LML A;  4M0I A;  2LKI A;  2DGY A;  1T8K A;  1OR5 A;  3CCL P;  2GZE A;  3I56 P;  1FR2 A;  2KOS A;  4UHP B;  1VQK P;  2LIU A;  2LTE A;  2JAZ A;  3G21 A;  1VQ6 P; 
#chains in the Genus database with same CATH homology
 1S72 P;  2M8N A;  1YIT P;  1YJN P;  4U0D A;  1K30 A;  1YIJ P;  3CC7 P;  1JJ2 O;  1VQ4 P;  1EOQ A;  3CMA P;  1K8A Q;  4PH0 A;  2QEX P;  1VQ5 P;  3H47 A;  2M8L A;  3DPH A;  1VQ7 P;  3CCR P;  2P9X A;  1A43 A;  5I4T G;  1RO2 A;  1A8O A;  3E2D A;  1KD1 Q;  4PH1 A;  4XRO A;  3DS3 A;  2JYL A;  1IUQ A;  4U0B A;  3CCM P;  1YJW P;  1Q7Y Q;  3DS1 A;  5F2O A;  3I55 P;  1E6J P;  2EG5 A;  4XFZ A;  4IPY A;  2PEI A;  3CCS P;  2Z45 A;  1W2B O;  1D1D A;  1N8R Q;  2PEJ A;  1QVG O;  1YHQ P;  2Z44 A;  4XFX A;  1YJ9 P;  2BUO A;  3G4S P;  3H0D A;  3G71 P;  2PEK A;  2JO0 A;  2LF4 A;  1RO0 A;  3CPW O;  3RG6 C;  4COC A;  1RNI A;  3G26 A;  2OTL P;  5BS2 A;  1AUM A;  1KC8 Q;  3CC2 P;  3NTE A;  5HGO A;  5F2K A;  2BHV A;  5HGN A;  1EIA A;  3DS4 A;  1VQ9 P;  3CCQ P;  5F2N A;  3G6E P;  2JYG A;  2PEO A;  1VQP P;  3CCU P;  3G29 A;  4U0F A;  5JPA A;  2XT1 A;  3G1G A;  2PEQ A;  5BS1 A;  4U0A A;  5DCK A;  3P05 A;  1Q86 Q;  3DTJ A;  3H4E A;  3WBH A;  3CXC O;  1NJI Q;  2PEM A;  4XRQ A;  3M1M A;  1Q82 Q;  1VQO P;  1Q81 Q;  2EFJ A;  1QRJ A;  3B5I A;  3G28 A;  5HGM A;  2OTJ P;  3DS5 A;  1VQN P;  1VQ8 P;  3CCE P;  3G1I A;  1VQL P;  3MGE A;  1M6N A;  3CD6 P;  3DS0 A;  4U0C A;  3LRY A;  3HZQ A;  4U0E A;  3OW2 O;  2PEN A;  1M1K Q;  1M90 Q;  1M6E X;  3HYB A;  1QVF O;  2CWO A;  3Q20 A;  3DS2 A;  4WYM A;  2XV6 A;  2OAR A;  4M0I A;  3G0V A;  1K9M Q;  4GR6 A;  1YI2 P;  2DGY A;  1BAJ A;  4QNB A;  1KQS O;  2KOD A;  2PY8 A;  3CCL P;  2QA4 P;  3I56 P;  3CC4 P;  1K73 Q;  1VQM P;  5HGL A;  2M8P A;  1ZMB A;  2E1M A;  2EIA A;  3CCJ P;  1VQK P;  3CME P;  2L6E A;  2ONT A;  2Z46 A;  4GR2 A;  4XFY A;  3VRL C;  1M74 A;  3G21 A;  3CCV P;  4COP A;  1VQ6 P;  2XXM A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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