1IUQA

The 1.55 a crystal structure of glycerol-3-phosphate acyltransferase
Total Genus 113
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
113
sequence length
367
structure length
357
Chain Sequence
ASHSRKFLDVRSEEELLSCIKKETEAGKLPPNVAAGMEELYQNYRNAVIESGNPKADEIVLSNMTVALDRILLDVEDPFVFSSHHKAIREPFDYYIFGQNYIRPLIDFGNSFVGNLSLFKDIEEKLQQGHNVVLISNHQTEADPAIISLLLEKTNPYIAENTIFVAGDRVLADPLCKPFSIGRNLICVYSKKHMFDIPELTETKRKANTRSLKEMALLLRGGSQLIWIAPSGGRDRPDPSTGEWYPAPFDASSVDNMRRLIQHSDVPGHLFPLALLCHDIMPPPRVIAFNGAGLSVAPEISFEEIAATHKNPEEVREAYSKALFDSVAMQYNVLKTAISGKQGLGASTADVSLSQPW
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Substrate recognition and selectivity of plant glycerol-3-phosphate acyltransferases (GPATs) from Cucurbita moscata and Spinacea oleracea.
pubmed doi rcsb
source organism Cucurbita moschata
molecule tags Transferase
molecule keywords Glycerol-3-Phosphate Acyltransferase
total genus 113
structure length 357
sequence length 367
ec nomenclature ec 2.3.1.15: Glycerol-3-phosphate 1-O-acyltransferase.
pdb deposition date 2002-03-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01553 Acyltransferase Acyltransferase
A PF14829 GPAT_N Glycerol-3-phosphate acyltransferase N-terminal
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1200.50 Mainly Alpha Orthogonal Bundle Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A 1iuqA01
3.40.1130.10 Alpha Beta 3-Layer(aba) Sandwich Glycerol-3-phosphate (1)-acyltransferase Glycerol-3-phosphate (1)-acyltransferase 1iuqA02
1IUQA 1K30A
chains in the Genus database with same CATH superfamily
5I4TG 3G26A 2GZJA 1VHNA 3G6EP 3CE7A 2KGEA 2Z44A 2KGAA 3H47A 3CCQP 3CCVP 2PEOA 2VLNA 3G4SP 3CCLP 3CD6P 2KR5A 5EJDA 2KG8A 1Q86Q 1N8RQ 3G28A 1CEIA 4R0MA 5BS2A 1VQ4P 2OTJP 1VQ5P 3HZQA 2QEXP 2MR8A 5HGNA 3G71P 4XFXA 1BXIA 2K93A 3CMEP 2N5HA 5HGLA 3EJEA 5F2OA 3H0DA 1EMVA 2LPKA 3GKLC 4WYMA 2L0QA 1D1DA 4MRTC 1RO0A 2ERHA 2VLPA 2KOPA 1IMPA 2KG6A 1KC8Q 3DS3A 2CG5B 3HYBA 2MVUA 4PWVB 1A8OA 3G29A 2PEQA 1YJNP 3DTJA 1QRJA 2N50A 2FACA 3NTEA 3LRYA 2VLOA 3U43A 5BS1A 4H2YC 2M8LA 1RO2A 2OARA 2VSQA 2LOLA 2LL8A 3VRLC 4HKGA 5HGOA 1YJ9P 2K5XA 2PEIA 1M6NA 1IMQA 4QKOA 5HV8A 1A43A 3DS4A 2JYLA 2AFDA 1NJIQ 1K8AQ 4COCA 4U0AA 1YHQP 1S72P 2KG9A 1ZMBA 4PH1A 2Z45A 5HGMA 2MY5A 2LIWA 4F37A 1UJZA 2DNWA 2GDXA 1AF8A 1HY8A 1KQSO 2QNWA 3CCMP 2BHVA 4U0CA 1YI2P 3GJNA 3EJDA 3DS1A 4U0EA 1HQBA 1YITP 2JU2A 2AVAA 2K0XA 2BUOA 2KWLA 5EW5E 2MR7A 2MD9A 1VQOP 2L6EA 2FVEA 2LMLA 5CZDB 1AUMA 2XZ0D 2M8PA 2N98A 4PXHB 2GZIA 4H2XC 2XXMA 2K92A 4NEOA 4COPA 5F2KA 3CCUP 2Z46A 2MF4A 4XRQA 5KP8B 2JU1A 3GZLA 1Z6MA 3CCRP 4IPYA 3EJBA 5KP6B 2LIUA 2P9XA 3CPWO 2CGQA 1ZNVA 2AF8A 4QNBA 1Q82Q 3I56P 3CC2P 2N6ZA 3RG2A 2M8NA 3H4EA 2JQ4A 1JJ2O 1GXGA 2X2BA 2KODA 5HVCA 1UNKA 2FVAA 3CC4P 1K73Q 4GR6A 4H2WC 2OTLP 2FADA 2FVFA 2EG5A 3CCEP 2L4BA 1QVFO 2XZ1C 1L0HA 2DGYA 1EOQA 2PNGA 2GDWA 2XT1A 3LMOA 2KORA 2L9FA 2LTEA 1M90Q 1M6EX 1KD1Q 3DS5A 2KGCA 1BAJA 4PH0A 2GZGA 1X3OA 1K30A 1EIAA 2GYKA 1VQ6P 4BPFA 1T8KA 1QVGO 4XFZA 3G0VA 3NY7B 2JO0A 2CQ8A 1IUQA 1KLPA 4XROA 2PY8A 2KOQA 2EHTA 2KOSA 3WBHA 2GDYA 3CC7P 2M5RA 1MZ8A 5KP7B 1VQ9P 1DNYA 1FR2A 1RNIA 3B5IA 2KOOA 2K2QA 3RG6C 1AYIA 2K0YA 1E0HA 2JB0A 1Q81Q 3M1MA 4U0FA 3OW2O 3GZMA 3G1IA 2JGPA 4U0DA 4CA3A 4DG9A 1VQNP 2XV6A 1VQ7P 1YIJP 3MGEA 1OR5A 3E2DA 3Q20A 2PEKA 4UHPB 2VLQA 4IZ6A 2FQ2A 1VQLP 5JPAA 3B4QA 2KGDA 2NO8A 3CCSP 2EIAA 1VQPP 1DV5A 2FQ1A 2MVVA 3P05A 1GXHA 3CCJP 2E1MA 2N6YA 4BPHA 2CWOA 2JYGA 1L0IA 2ONTA 4XFYA 2ROQA 4M0IA 2WPTA 2GZFA 1YJWP 1Q7YQ 2K0DX 1GPJA 2QA4P 2N5IA 1M1KQ 2FQ0A 3CXCO 1VQMP 2PEJA 3I55P 1E6JP 2EHSA 4BPGA 2PEMA 2PENA 2LKIA 3DS0A 2LF4A 2KW2A 2GZEA 1VQ8P 3G21A 2FHSC 1ACPA 1W2BO 2CNRA 2EFJA 3DS2A 2JBGA 2K94A 2AFEA 2JAZA 4GR2A 1VKUA 2FAEA 5F2NA 1NQ4A 7CEIA 3DPHA 3G1GA 1K9MQ 4U0BA 1VQKP 2L22A 3CMAP 1M74A 1F80D 5DCKA
chains in the Genus database with same CATH topology
4COCA 5I4TG 4U0AA 1VQLP 3G26A 1YHQP 3CCEP 5JPAA 1S72P 1QVFO 3G6EP 1ZMBA 4PH1A 2DGYA 2Z45A 3CCSP 1EOQA 5HGMA 2Z44A 2XT1A 2EIAA 1VQPP 3H47A 3CCQP 3CCVP 2PEOA 3G4SP 3CCLP 3CD6P 1M90Q 3P05A 1KQSO 3CCMP 1Q86Q 2BHVA 1N8RQ 3G28A 4U0CA 3CCJP 1YI2P 1M6EX 1KD1Q 3DS5A 2E1MA 3DS1A 4U0EA 5BS2A 1VQ4P 2CWOA 2JYGA 2OTJP 1BAJA 1YITP 4PH0A 1VQ5P 2ONTA 4XFYA 1K30A 3HZQA 2QEXP 5HGNA 4M0IA 2BUOA 1EIAA 3G71P 1VQ6P 1YJWP 1Q7YQ 1VQOP 1QVGO 2L6EA 4XFZA 2QA4P 3G0VA 4XFXA 2JO0A 1M1KQ 3CMEP 1IUQA 3CXCO 1AUMA 4XROA 1VQMP 2PY8A 2PEJA 3I55P 2M8PA 1E6JP 5HGLA 5F2OA 3H0DA 3WBHA 4WYMA 1D1DA 2PEMA 1RO0A 2PENA 2XXMA 3CC7P 3DS0A 2LF4A 1KC8Q 3DS3A 4COPA 5F2KA 3CCUP 1VQ8P 3HYBA 3G21A 2Z46A 1VQ9P 1A8OA 3G29A 2PEQA 1YJNP 3DTJA 1QRJA 1W2BO 4XRQA 1RNIA 3NTEA 3LRYA 3B5IA 3DS2A 2EFJA 5BS1A 2M8LA 3RG6C 1RO2A 3CCRP 2OARA 4IPYA 2P9XA 4GR2A 3VRLC 3CPWO 4QNBA 1Q82Q 5HGOA 3I56P 5F2NA 3CC2P 1Q81Q 3M1MA 1YJ9P 4U0FA 2PEIA 3OW2O 2M8NA 3H4EA 1M6NA 3G1IA 1JJ2O 3DPHA 3G1GA 1K9MQ 4U0BA 1A43A 3DS4A 2JYLA 1VQKP 4U0DA 2KODA 1VQNP 2XV6A 1VQ7P 1YIJP 3CMAP 3CC4P 3MGEA 1K73Q 1M74A 1NJIQ 3E2DA 3Q20A 4GR6A 2OTLP 2PEKA 5DCKA 2EG5A 1K8AQ
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1IUQ A;  1K30 A; 
#chains in the Genus database with same CATH topology
 5I4T G;  3G26 A;  2GZJ A;  1VHN A;  3G6E P;  3CE7 A;  2KGE A;  2Z44 A;  2KGA A;  3H47 A;  3CCQ P;  3CCV P;  2PEO A;  2VLN A;  3G4S P;  3CCL P;  3CD6 P;  2KR5 A;  5EJD A;  2KG8 A;  1Q86 Q;  1N8R Q;  3G28 A;  1CEI A;  4R0M A;  5BS2 A;  1VQ4 P;  2OTJ P;  1VQ5 P;  3HZQ A;  2QEX P;  2MR8 A;  5HGN A;  3G71 P;  4XFX A;  1BXI A;  2K93 A;  3CME P;  2N5H A;  5HGL A;  3EJE A;  5F2O A;  3H0D A;  1EMV A;  2LPK A;  3GKL C;  4WYM A;  2L0Q A;  1D1D A;  4MRT C;  1RO0 A;  2ERH A;  2VLP A;  2KOP A;  1IMP A;  2KG6 A;  1KC8 Q;  3DS3 A;  2CG5 B;  3HYB A;  2MVU A;  4PWV B;  1A8O A;  3G29 A;  2PEQ A;  1YJN P;  3DTJ A;  1QRJ A;  2N50 A;  2FAC A;  3NTE A;  3LRY A;  2VLO A;  3U43 A;  5BS1 A;  4H2Y C;  2M8L A;  1RO2 A;  2OAR A;  2VSQ A;  2LOL A;  2LL8 A;  3VRL C;  4HKG A;  5HGO A;  1YJ9 P;  2K5X A;  2PEI A;  1M6N A;  1IMQ A;  4QKO A;  5HV8 A;  1A43 A;  3DS4 A;  2JYL A;  2AFD A;  1NJI Q;  1K8A Q;  4COC A;  4U0A A;  1YHQ P;  1S72 P;  2KG9 A;  1ZMB A;  4PH1 A;  2Z45 A;  5HGM A;  2MY5 A;  2LIW A;  4F37 A;  1UJZ A;  2DNW A;  2GDX A;  1AF8 A;  1HY8 A;  1KQS O;  2QNW A;  3CCM P;  2BHV A;  4U0C A;  1YI2 P;  3GJN A;  3EJD A;  3DS1 A;  4U0E A;  1HQB A;  1YIT P;  2JU2 A;  2AVA A;  2K0X A;  2BUO A;  2KWL A;  5EW5 E;  2MR7 A;  2MD9 A;  1VQO P;  2L6E A;  2FVE A;  2LML A;  5CZD B;  1AUM A;  2XZ0 D;  2M8P A;  2N98 A;  4PXH B;  2GZI A;  4H2X C;  2XXM A;  2K92 A;  4NEO A;  4COP A;  5F2K A;  3CCU P;  2Z46 A;  2MF4 A;  4XRQ A;  5KP8 B;  2JU1 A;  3GZL A;  1Z6M A;  3CCR P;  4IPY A;  3EJB A;  5KP6 B;  2LIU A;  2P9X A;  3CPW O;  2CGQ A;  1ZNV A;  2AF8 A;  4QNB A;  1Q82 Q;  3I56 P;  3CC2 P;  2N6Z A;  3RG2 A;  2M8N A;  3H4E A;  2JQ4 A;  1JJ2 O;  1GXG A;  2X2B A;  2KOD A;  5HVC A;  1UNK A;  2FVA A;  3CC4 P;  1K73 Q;  4GR6 A;  4H2W C;  2OTL P;  2FAD A;  2FVF A;  2EG5 A;  3CCE P;  2L4B A;  1QVF O;  2XZ1 C;  1L0H A;  2DGY A;  1EOQ A;  2PNG A;  2GDW A;  2XT1 A;  3LMO A;  2KOR A;  2L9F A;  2LTE A;  1M90 Q;  1M6E X;  1KD1 Q;  3DS5 A;  2KGC A;  1BAJ A;  4PH0 A;  2GZG A;  1X3O A;  1K30 A;  1EIA A;  2GYK A;  1VQ6 P;  4BPF A;  1T8K A;  1QVG O;  4XFZ A;  3G0V A;  3NY7 B;  2JO0 A;  2CQ8 A;  1IUQ A;  1KLP A;  4XRO A;  2PY8 A;  2KOQ A;  2EHT A;  2KOS A;  3WBH A;  2GDY A;  3CC7 P;  2M5R A;  1MZ8 A;  5KP7 B;  1VQ9 P;  1DNY A;  1FR2 A;  1RNI A;  3B5I A;  2KOO A;  2K2Q A;  3RG6 C;  1AYI A;  2K0Y A;  1E0H A;  2JB0 A;  1Q81 Q;  3M1M A;  4U0F A;  3OW2 O;  3GZM A;  3G1I A;  2JGP A;  4U0D A;  4CA3 A;  4DG9 A;  1VQN P;  2XV6 A;  1VQ7 P;  1YIJ P;  3MGE A;  1OR5 A;  3E2D A;  3Q20 A;  2PEK A;  4UHP B;  2VLQ A;  4IZ6 A;  2FQ2 A;  1VQL P;  5JPA A;  3B4Q A;  2KGD A;  2NO8 A;  3CCS P;  2EIA A;  1VQP P;  1DV5 A;  2FQ1 A;  2MVV A;  3P05 A;  1GXH A;  3CCJ P;  2E1M A;  2N6Y A;  4BPH A;  2CWO A;  2JYG A;  1L0I A;  2ONT A;  4XFY A;  2ROQ A;  4M0I A;  2WPT A;  2GZF A;  1YJW P;  1Q7Y Q;  2K0D X;  1GPJ A;  2QA4 P;  2N5I A;  1M1K Q;  2FQ0 A;  3CXC O;  1VQM P;  2PEJ A;  3I55 P;  1E6J P;  2EHS A;  4BPG A;  2PEM A;  2PEN A;  2LKI A;  3DS0 A;  2LF4 A;  2KW2 A;  2GZE A;  1VQ8 P;  3G21 A;  2FHS C;  1ACP A;  1W2B O;  2CNR A;  2EFJ A;  3DS2 A;  2JBG A;  2K94 A;  2AFE A;  2JAZ A;  4GR2 A;  1VKU A;  2FAE A;  5F2N A;  1NQ4 A;  7CEI A;  3DPH A;  3G1G A;  1K9M Q;  4U0B A;  1VQK P;  2L22 A;  3CMA P;  1M74 A;  1F80 D;  5DCK A; 
#chains in the Genus database with same CATH homology
 4COC A;  5I4T G;  4U0A A;  1VQL P;  3G26 A;  1YHQ P;  3CCE P;  5JPA A;  1S72 P;  1QVF O;  3G6E P;  1ZMB A;  4PH1 A;  2DGY A;  2Z45 A;  3CCS P;  1EOQ A;  5HGM A;  2Z44 A;  2XT1 A;  2EIA A;  1VQP P;  3H47 A;  3CCQ P;  3CCV P;  2PEO A;  3G4S P;  3CCL P;  3CD6 P;  1M90 Q;  3P05 A;  1KQS O;  3CCM P;  1Q86 Q;  2BHV A;  1N8R Q;  3G28 A;  4U0C A;  3CCJ P;  1YI2 P;  1M6E X;  1KD1 Q;  3DS5 A;  2E1M A;  3DS1 A;  4U0E A;  5BS2 A;  1VQ4 P;  2CWO A;  2JYG A;  2OTJ P;  1BAJ A;  1YIT P;  4PH0 A;  1VQ5 P;  2ONT A;  4XFY A;  1K30 A;  3HZQ A;  2QEX P;  5HGN A;  4M0I A;  2BUO A;  1EIA A;  3G71 P;  1VQ6 P;  1YJW P;  1Q7Y Q;  1VQO P;  1QVG O;  2L6E A;  4XFZ A;  2QA4 P;  3G0V A;  4XFX A;  2JO0 A;  1M1K Q;  3CME P;  1IUQ A;  3CXC O;  1AUM A;  4XRO A;  1VQM P;  2PY8 A;  2PEJ A;  3I55 P;  2M8P A;  1E6J P;  5HGL A;  5F2O A;  3H0D A;  3WBH A;  4WYM A;  1D1D A;  2PEM A;  1RO0 A;  2PEN A;  2XXM A;  3CC7 P;  3DS0 A;  2LF4 A;  1KC8 Q;  3DS3 A;  4COP A;  5F2K A;  3CCU P;  1VQ8 P;  3HYB A;  3G21 A;  2Z46 A;  1VQ9 P;  1A8O A;  3G29 A;  2PEQ A;  1YJN P;  3DTJ A;  1QRJ A;  1W2B O;  4XRQ A;  1RNI A;  3NTE A;  3LRY A;  3B5I A;  3DS2 A;  2EFJ A;  5BS1 A;  2M8L A;  3RG6 C;  1RO2 A;  3CCR P;  2OAR A;  4IPY A;  2P9X A;  4GR2 A;  3VRL C;  3CPW O;  4QNB A;  1Q82 Q;  5HGO A;  3I56 P;  5F2N A;  3CC2 P;  1Q81 Q;  3M1M A;  1YJ9 P;  4U0F A;  2PEI A;  3OW2 O;  2M8N A;  3H4E A;  1M6N A;  3G1I A;  1JJ2 O;  3DPH A;  3G1G A;  1K9M Q;  4U0B A;  1A43 A;  3DS4 A;  2JYL A;  1VQK P;  4U0D A;  2KOD A;  1VQN P;  2XV6 A;  1VQ7 P;  1YIJ P;  3CMA P;  3CC4 P;  3MGE A;  1K73 Q;  1M74 A;  1NJI Q;  3E2D A;  3Q20 A;  4GR6 A;  2OTL P;  2PEK A;  5DCK A;  2EG5 A;  1K8A Q; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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