1IUQA

The 1.55 a crystal structure of glycerol-3-phosphate acyltransferase
Total Genus 113
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
113
sequence length
367
structure length
357
Chain Sequence
b'ASHSRKFLDVRSEEELLSCIKKETEAGKLPPNVAAGMEELYQNYRNAVIESGNPKADEIVLSNMTVALDRILLDVEDPFVFSSHHKAIREPFDYYIFGQNYIRPLIDFGNSFVGNLSLFKDIEEKLQQGHNVVLISNHQTEADPAIISLLLEKTNPYIAENTIFVAGDRVLADPLCKPFSIGRNLICVYSKKHMFDIPELTETKRKANTRSLKEMALLLRGGSQLIWIAPSGGRDRPDPSTGEWYPAPFDASSVDNMRRLIQHSDVPGHLFPLALLCHDIMPPPRVIAFNGAGLSVAPEISFEEIAATHKNPEEVREAYSKALFDSVAMQYNVLKTAISGKQGLGASTADVSLSQPW'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Glycerol-3-Phosphate Acyltransferase
publication title Substrate recognition and selectivity of plant glycerol-3-phosphate acyltransferases (GPATs) from Cucurbita moscata and Spinacea oleracea.
pubmed doi rcsb
source organism Cucurbita moschata
molecule tags Transferase
total genus 113
structure length 357
sequence length 367
ec nomenclature ec 2.3.1.15: Glycerol-3-phosphate 1-O-acyltransferase.
pdb deposition date 2002-03-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01553 Acyltransferase Acyltransferase
A PF14829 GPAT_N Glycerol-3-phosphate acyltransferase N-terminal
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1200.50 Mainly Alpha Orthogonal Bundle Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A 1iuqA01
3.40.1130.10 Alpha Beta 3-Layer(aba) Sandwich Glycerol-3-phosphate (1)-acyltransferase Glycerol-3-phosphate (1)-acyltransferase 1iuqA02
1IUQA 1K30A
chains in the Genus database with same CATH superfamily
4XFXA 1BAJA 3GZMA 1Q81Q 1HQBA 2JQ4A 2FVFA 3DPHA 5DCKA 3CCUP 2CNRA 2KGEA 3I56P 2KGDA 2KGAA 2JBGA 5CZDB 3CD6P 2LIWA 4GR2A 1X3OA 4H2WC 5BS2A 4COPA 1JJ2O 3CCLP 5BS1A 2GYKA 2BUOA 3GZLA 4M0IA 2M8LA 2KG6A 1GXHA 1VKUA 5KP7B 5HGNA 2MR7A 1T8KA 1VQMP 1F80D 2CQ8A 2M8NA 2FVEA 4U0FA 2PEOA 1M6EX 2K93A 4DG9A 3B4QA 1E0HA 2L6EA 2KORA 3EJDA 2WPTA 3G1IA 3M1MA 3I55P 4U0BA 3CCVP 2KG9A 5HGOA 1QVGO 3CCRP 2DNWA 2PEIA 3HZQA 1QRJA 1VQKP 1NJIQ 1VQ6P 3MGEA 4PH1A 1Z6MA 2QEXP 3CMEP 2Z46A 1VQOP 1KC8Q 3G71P 2VLPA 3E2DA 1YJNP 3DS4A 2QA4P 2CGQA 2OARA 3H4EA 4XFYA 2GDXA 1NQ4A 4QNBA 5F2KA 3G21A 1KLPA 4PWVB 1M90Q 1K8AQ 3G28A 2FACA 2JYGA 3WBHA 2PEQA 1M74A 4U0EA 2QNWA 2CG5B 1FR2A 2KOPA 1UNKA 3CXCO 3RG6C 4F37A 1VQNP 1E6JP 2MD9A 1UJZA 3DS3A 2K0YA 5KP8B 3G29A 4XROA 3DS0A 2VLOA 5KP6B 2N5IA 1W2BO 1YJ9P 3G4SP 2GDYA 2K94A 1Q7YQ 2EHTA 3CPWO 4BPFA 3DS1A 5HGLA 1IMPA 4MRTC 1VQ4P 2LTEA 2P9XA 2GDWA 2PEMA 3VRLC 2FQ2A 2KOOA 2ROQA 2JGPA 3OW2O 1YI2P 2LKIA 3DTJA 1D1DA 5I4TG 4U0CA 3H47A 3EJEA 2GZJA 4CA3A 2KOQA 5JPAA 2XT1A 1S72P 1AUMA 3NY7B 2K0XA 4QKOA 2LOLA 1Q82Q 2L0QA 3LRYA 2FADA 2AF8A 3CC2P 1VHNA 2M8PA 1VQ7P 1RNIA 1AF8A 4H2YC 1ZNVA 1VQPP 1GPJA 2GZGA 1VQ5P 4R0MA 3EJBA 3DS2A 4H2XC 3LMOA 1K30A 3CCEP 2LL8A 3G0VA 1CEIA 1KQSO 2KW2A 5F2NA 1A8OA 2MVVA 2XZ1C 3CCJP 2OTJP 2E1MA 5HV8A 5HVCA 2AVAA 2JB0A 1OR5A 1N8RQ 2EHSA 4XFZA 1VQ9P 3DS5A 2EG5A 2VLQA 1Q86Q 2FQ1A 2K92A 3RG2A 2FVAA 2L4BA 2KOSA 1RO2A 2LIUA 2KG8A 2JU1A 4COCA 2PY8A 4U0AA 7CEIA 3CC7P 2LMLA 4NEOA 4UHPB 1K73Q 4BPGA 2L22A 1BXIA 1MZ8A 3HYBA 3GKLC 1YIJP 1YHQP 2GZFA 2MY5A 1M6NA 5HGMA 3CCMP 1L0HA 3GJNA 2PENA 1AYIA 4HKGA 1EOQA 3CE7A 2FAEA 2PNGA 4BPHA 2XV6A 4U0DA 3CMAP 2DGYA 1EIAA 3NTEA 2X2BA 3CCSP 4WYMA 2JO0A 1VQLP 2MVUA 3G26A 3CC4P 1DV5A 2FHSC 1VQ8P 3G6EP 1IMQA 3Q20A 4PXHB 4GR6A 5EJDA 2KGCA 1L0IA 1A43A 1IUQA 2ERHA 2FQ0A 5F2OA 2CWOA 3H0DA 2EIAA 2M5RA 2XZ0D 2LF4A 1GXGA 2AFDA 2L9FA 2ONTA 2Z44A 2LPKA 2OTLP 2XXMA 2K0DX 1YITP 2K2QA 2N6ZA 2N6YA 2N98A 2PEKA 2EFJA 2BHVA 5EW5E 2VSQA 2JU2A 3P05A 1K9MQ 3U43A 3B5IA 1DNYA 4XRQA 1M1KQ 4IZ6A 2VLNA 2NO8A 2KR5A 1HY8A 3G1GA 2AFEA 2Z45A 2N5HA 2PEJA 4IPYA 4PH0A 2N50A 1EMVA 2GZIA 2K5XA 1RO0A 2KWLA 2MR8A 2JYLA 1QVFO 2GZEA 2MF4A 1ACPA 1ZMBA 3CCQP 1KD1Q 2KODA 2JAZA 1YJWP
chains in the Genus database with same CATH topology
2DGYA 1EIAA 2OARA 3NTEA 4XFXA 1Q82Q 3H4EA 4XFYA 3LRYA 1BAJA 3CCSP 4WYMA 2JO0A 1Q81Q 3CC2P 1VQLP 2M8PA 4QNBA 3DPHA 1VQ7P 5DCKA 3G26A 3CC4P 1RNIA 5F2KA 1VQ8P 3G6EP 1VQPP 1VQ5P 3CCUP 3G21A 3Q20A 3DS2A 4GR6A 3I56P 3CD6P 1M90Q 1K30A 3CCEP 3G0VA 1K8AQ 3G28A 1KQSO 1A43A 4GR2A 1IUQA 5F2OA 5F2NA 1A8OA 2CWOA 3H0DA 2JYGA 2EIAA 3WBHA 5BS2A 3CCJP 2PEQA 1M74A 2LF4A 2OTJP 2E1MA 4U0EA 4COPA 1JJ2O 3CCLP 5BS1A 2BUOA 2ONTA 3CXCO 3RG6C 4M0IA 1VQNP 1N8RQ 2M8LA 2Z44A 1E6JP 4XFZA 3DS3A 1VQ9P 3DS5A 3G29A 4XROA 2OTLP 2EG5A 2XXMA 3DS0A 1Q86Q 5HGNA 1VQMP 1W2BO 1YITP 1YJ9P 3G4SP 1Q7YQ 2M8NA 4U0FA 2PEOA 2PEKA 1RO2A 2EFJA 1M6EX 2BHVA 3CPWO 3DS1A 5HGLA 1VQ4P 4COCA 2P9XA 2L6EA 3P05A 1K9MQ 3B5IA 2QA4P 2PEMA 4XRQA 1M1KQ 3VRLC 2PY8A 4U0AA 3CC7P 3OW2O 1K73Q 3G1GA 3G1IA 3M1MA 2Z45A 3HYBA 1YI2P 2PEJA 3I55P 4IPYA 4PH0A 4U0BA 3DTJA 1D1DA 3CCVP 5HGOA 5I4TG 1QVGO 4U0CA 3CCRP 1YIJP 2PEIA 1RO0A 1YHQP 3H47A 3HZQA 1QRJA 1VQKP 1M6NA 5HGMA 2JYLA 1NJIQ 1QVFO 1VQ6P 5JPAA 3MGEA 2XT1A 4PH1A 3CCMP 2QEXP 3CMEP 2PENA 2Z46A 1VQOP 1S72P 1ZMBA 3CCQP 1KC8Q 3G71P 1KD1Q 1AUMA 1EOQA 2KODA 3E2DA 1YJNP 3DS4A 1YJWP 2XV6A 4U0DA 3CMAP
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1IUQ A;  1K30 A; 
#chains in the Genus database with same CATH topology
 4XFX A;  1BAJ A;  3GZM A;  1Q81 Q;  1HQB A;  2JQ4 A;  2FVF A;  3DPH A;  5DCK A;  3CCU P;  2CNR A;  2KGE A;  3I56 P;  2KGD A;  2KGA A;  2JBG A;  5CZD B;  3CD6 P;  2LIW A;  4GR2 A;  1X3O A;  4H2W C;  5BS2 A;  4COP A;  1JJ2 O;  3CCL P;  5BS1 A;  2GYK A;  2BUO A;  3GZL A;  4M0I A;  2M8L A;  2KG6 A;  1GXH A;  1VKU A;  5KP7 B;  5HGN A;  2MR7 A;  1T8K A;  1VQM P;  1F80 D;  2CQ8 A;  2M8N A;  2FVE A;  4U0F A;  2PEO A;  1M6E X;  2K93 A;  4DG9 A;  3B4Q A;  1E0H A;  2L6E A;  2KOR A;  3EJD A;  2WPT A;  3G1I A;  3M1M A;  3I55 P;  4U0B A;  3CCV P;  2KG9 A;  5HGO A;  1QVG O;  3CCR P;  2DNW A;  2PEI A;  3HZQ A;  1QRJ A;  1VQK P;  1NJI Q;  1VQ6 P;  3MGE A;  4PH1 A;  1Z6M A;  2QEX P;  3CME P;  2Z46 A;  1VQO P;  1KC8 Q;  3G71 P;  2VLP A;  3E2D A;  1YJN P;  3DS4 A;  2QA4 P;  2CGQ A;  2OAR A;  3H4E A;  4XFY A;  2GDX A;  1NQ4 A;  4QNB A;  5F2K A;  3G21 A;  1KLP A;  4PWV B;  1M90 Q;  1K8A Q;  3G28 A;  2FAC A;  2JYG A;  3WBH A;  2PEQ A;  1M74 A;  4U0E A;  2QNW A;  2CG5 B;  1FR2 A;  2KOP A;  1UNK A;  3CXC O;  3RG6 C;  4F37 A;  1VQN P;  1E6J P;  2MD9 A;  1UJZ A;  3DS3 A;  2K0Y A;  5KP8 B;  3G29 A;  4XRO A;  3DS0 A;  2VLO A;  5KP6 B;  2N5I A;  1W2B O;  1YJ9 P;  3G4S P;  2GDY A;  2K94 A;  1Q7Y Q;  2EHT A;  3CPW O;  4BPF A;  3DS1 A;  5HGL A;  1IMP A;  4MRT C;  1VQ4 P;  2LTE A;  2P9X A;  2GDW A;  2PEM A;  3VRL C;  2FQ2 A;  2KOO A;  2ROQ A;  2JGP A;  3OW2 O;  1YI2 P;  2LKI A;  3DTJ A;  1D1D A;  5I4T G;  4U0C A;  3H47 A;  3EJE A;  2GZJ A;  4CA3 A;  2KOQ A;  5JPA A;  2XT1 A;  1S72 P;  1AUM A;  3NY7 B;  2K0X A;  4QKO A;  2LOL A;  1Q82 Q;  2L0Q A;  3LRY A;  2FAD A;  2AF8 A;  3CC2 P;  1VHN A;  2M8P A;  1VQ7 P;  1RNI A;  1AF8 A;  4H2Y C;  1ZNV A;  1VQP P;  1GPJ A;  2GZG A;  1VQ5 P;  4R0M A;  3EJB A;  3DS2 A;  4H2X C;  3LMO A;  1K30 A;  3CCE P;  2LL8 A;  3G0V A;  1CEI A;  1KQS O;  2KW2 A;  5F2N A;  1A8O A;  2MVV A;  2XZ1 C;  3CCJ P;  2OTJ P;  2E1M A;  5HV8 A;  5HVC A;  2AVA A;  2JB0 A;  1OR5 A;  1N8R Q;  2EHS A;  4XFZ A;  1VQ9 P;  3DS5 A;  2EG5 A;  2VLQ A;  1Q86 Q;  2FQ1 A;  2K92 A;  3RG2 A;  2FVA A;  2L4B A;  2KOS A;  1RO2 A;  2LIU A;  2KG8 A;  2JU1 A;  4COC A;  2PY8 A;  4U0A A;  7CEI A;  3CC7 P;  2LML A;  4NEO A;  4UHP B;  1K73 Q;  4BPG A;  2L22 A;  1BXI A;  1MZ8 A;  3HYB A;  3GKL C;  1YIJ P;  1YHQ P;  2GZF A;  2MY5 A;  1M6N A;  5HGM A;  3CCM P;  1L0H A;  3GJN A;  2PEN A;  1AYI A;  4HKG A;  1EOQ A;  3CE7 A;  2FAE A;  2PNG A;  4BPH A;  2XV6 A;  4U0D A;  3CMA P;  2DGY A;  1EIA A;  3NTE A;  2X2B A;  3CCS P;  4WYM A;  2JO0 A;  1VQL P;  2MVU A;  3G26 A;  3CC4 P;  1DV5 A;  2FHS C;  1VQ8 P;  3G6E P;  1IMQ A;  3Q20 A;  4PXH B;  4GR6 A;  5EJD A;  2KGC A;  1L0I A;  1A43 A;  1IUQ A;  2ERH A;  2FQ0 A;  5F2O A;  2CWO A;  3H0D A;  2EIA A;  2M5R A;  2XZ0 D;  2LF4 A;  1GXG A;  2AFD A;  2L9F A;  2ONT A;  2Z44 A;  2LPK A;  2OTL P;  2XXM A;  2K0D X;  1YIT P;  2K2Q A;  2N6Z A;  2N6Y A;  2N98 A;  2PEK A;  2EFJ A;  2BHV A;  5EW5 E;  2VSQ A;  2JU2 A;  3P05 A;  1K9M Q;  3U43 A;  3B5I A;  1DNY A;  4XRQ A;  1M1K Q;  4IZ6 A;  2VLN A;  2NO8 A;  2KR5 A;  1HY8 A;  3G1G A;  2AFE A;  2Z45 A;  2N5H A;  2PEJ A;  4IPY A;  4PH0 A;  2N50 A;  1EMV A;  2GZI A;  2K5X A;  1RO0 A;  2KWL A;  2MR8 A;  2JYL A;  1QVF O;  2GZE A;  2MF4 A;  1ACP A;  1ZMB A;  3CCQ P;  1KD1 Q;  2KOD A;  2JAZ A;  1YJW P; 
#chains in the Genus database with same CATH homology
 2DGY A;  1EIA A;  2OAR A;  3NTE A;  4XFX A;  1Q82 Q;  3H4E A;  4XFY A;  3LRY A;  1BAJ A;  3CCS P;  4WYM A;  2JO0 A;  1Q81 Q;  3CC2 P;  1VQL P;  2M8P A;  4QNB A;  3DPH A;  1VQ7 P;  5DCK A;  3G26 A;  3CC4 P;  1RNI A;  5F2K A;  1VQ8 P;  3G6E P;  1VQP P;  1VQ5 P;  3CCU P;  3G21 A;  3Q20 A;  3DS2 A;  4GR6 A;  3I56 P;  3CD6 P;  1M90 Q;  1K30 A;  3CCE P;  3G0V A;  1K8A Q;  3G28 A;  1KQS O;  1A43 A;  4GR2 A;  1IUQ A;  5F2O A;  5F2N A;  1A8O A;  2CWO A;  3H0D A;  2JYG A;  2EIA A;  3WBH A;  5BS2 A;  3CCJ P;  2PEQ A;  1M74 A;  2LF4 A;  2OTJ P;  2E1M A;  4U0E A;  4COP A;  1JJ2 O;  3CCL P;  5BS1 A;  2BUO A;  2ONT A;  3CXC O;  3RG6 C;  4M0I A;  1VQN P;  1N8R Q;  2M8L A;  2Z44 A;  1E6J P;  4XFZ A;  3DS3 A;  1VQ9 P;  3DS5 A;  3G29 A;  4XRO A;  2OTL P;  2EG5 A;  2XXM A;  3DS0 A;  1Q86 Q;  5HGN A;  1VQM P;  1W2B O;  1YIT P;  1YJ9 P;  3G4S P;  1Q7Y Q;  2M8N A;  4U0F A;  2PEO A;  2PEK A;  1RO2 A;  2EFJ A;  1M6E X;  2BHV A;  3CPW O;  3DS1 A;  5HGL A;  1VQ4 P;  4COC A;  2P9X A;  2L6E A;  3P05 A;  1K9M Q;  3B5I A;  2QA4 P;  2PEM A;  4XRQ A;  1M1K Q;  3VRL C;  2PY8 A;  4U0A A;  3CC7 P;  3OW2 O;  1K73 Q;  3G1G A;  3G1I A;  3M1M A;  2Z45 A;  3HYB A;  1YI2 P;  2PEJ A;  3I55 P;  4IPY A;  4PH0 A;  4U0B A;  3DTJ A;  1D1D A;  3CCV P;  5HGO A;  5I4T G;  1QVG O;  4U0C A;  3CCR P;  1YIJ P;  2PEI A;  1RO0 A;  1YHQ P;  3H47 A;  3HZQ A;  1QRJ A;  1VQK P;  1M6N A;  5HGM A;  2JYL A;  1NJI Q;  1QVF O;  1VQ6 P;  5JPA A;  3MGE A;  2XT1 A;  4PH1 A;  3CCM P;  2QEX P;  3CME P;  2PEN A;  2Z46 A;  1VQO P;  1S72 P;  1ZMB A;  3CCQ P;  1KC8 Q;  3G71 P;  1KD1 Q;  1AUM A;  1EOQ A;  2KOD A;  3E2D A;  1YJN P;  3DS4 A;  1YJW P;  2XV6 A;  4U0D A;  3CMA P; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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