1IUQA

The 1.55 a crystal structure of glycerol-3-phosphate acyltransferase
Total Genus 113
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
113
sequence length
367
structure length
357
Chain Sequence
ASHSRKFLDVRSEEELLSCIKKETEAGKLPPNVAAGMEELYQNYRNAVIESGNPKADEIVLSNMTVALDRILLDVEDPFVFSSHHKAIREPFDYYIFGQNYIRPLIDFGNSFVGNLSLFKDIEEKLQQGHNVVLISNHQTEADPAIISLLLEKTNPYIAENTIFVAGDRVLADPLCKPFSIGRNLICVYSKKHMFDIPELTETKRKANTRSLKEMALLLRGGSQLIWIAPSGGRDRPDPSTGEWYPAPFDASSVDNMRRLIQHSDVPGHLFPLALLCHDIMPPPRVIAFNGAGLSVAPEISFEEIAATHKNPEEVREAYSKALFDSVAMQYNVLKTAISGKQGLGASTADVSLSQPW
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Substrate recognition and selectivity of plant glycerol-3-phosphate acyltransferases (GPATs) from Cucurbita moscata and Spinacea oleracea.
pubmed doi rcsb
source organism Cucurbita moschata
molecule tags Transferase
molecule keywords Glycerol-3-Phosphate Acyltransferase
total genus 113
structure length 357
sequence length 367
ec nomenclature ec 2.3.1.15: Glycerol-3-phosphate 1-O-acyltransferase.
pdb deposition date 2002-03-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01553 Acyltransferase Acyltransferase
A PF14829 GPAT_N Glycerol-3-phosphate acyltransferase N-terminal
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1200.50 Mainly Alpha Orthogonal Bundle Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A 1iuqA01
3.40.1130.10 Alpha Beta 3-Layer(aba) Sandwich Glycerol-3-phosphate (1)-acyltransferase Glycerol-3-phosphate (1)-acyltransferase 1iuqA02
1K30A 1IUQA
chains in the Genus database with same CATH superfamily
3H4EA 1YITP 3GJNA 1S72P 2FVEA 3DS2A 2KG8A 1CEIA 5KP8B 1M6NA 3G26A 2KGEA 4XFZA 1Q81Q 5F2NA 4IPYA 3HZQA 5HGLA 1F80D 2MY5A 2AFDA 1M90Q 2ONTA 2LKIA 1VQKP 2FADA 1T8KA 2KOSA 3CMEP 4PH1A 2MD9A 4U0EA 4U0BA 4COCA 2JAZA 1VQ5P 2FQ0A 4M0IA 2GDYA 2KORA 1ZNVA 2PNGA 2JO0A 5HVCA 1D1DA 2L6EA 4PH0A 3CCLP 4BPFA 5HGOA 2EHSA 2N50A 4XRQA 4PWVB 3H0DA 2BUOA 2GYKA 1BXIA 2LF4A 4U0FA 2FVFA 1VQMP 3DS0A 4COPA 2DGYA 5KP6B 3CD6P 2JB0A 2L0QA 2JGPA 4XROA 2PEMA 2PEOA 3CCVP 4H2WC 2JU1A 2P9XA 2M5RA 2Z46A 1YI2P 2KWLA 1X3OA 2JBGA 2KOPA 1K9MQ 2GDXA 1MZ8A 3CC7P 2EHTA 1Q82Q 2PENA 2AF8A 4NEOA 3LMOA 3CCMP 2M8PA 1UNKA 1QRJA 4H2XC 2AFEA 3G29A 2VLQA 3MGEA 2N98A 1HQBA 2OTLP 2MR7A 1UJZA 3CCUP 2K94A 2E1MA 2L9FA 3WBHA 7CEIA 1GXHA 1W2BO 3DS3A 2LMLA 2XT1A 2N6ZA 3P05A 5BS1A 4U0DA 3CC2P 3I56P 1Z6MA 2CGQA 2K2QA 1IMQA 2FVAA 2ROQA 1KC8Q 2K0DX 2CNRA 1K30A 2PEJA 4R0MA 2WPTA 1VQLP 4XFXA 2KGCA 3B4QA 4GR2A 2OARA 2N5IA 2ERHA 2K0YA 2N5HA 3U43A 2KGAA 4F37A 3B5IA 1VQ4P 1NQ4A 1YIJP 1RO0A 1VQOP 3G4SP 1HY8A 2NO8A 2Z44A 2LOLA 2XXMA 3G28A 1DV5A 2FACA 5EW5E 3GKLC 3G71P 5HGMA 2M8NA 2QEXP 1EIAA 2MR8A 3CC4P 2XZ0D 2Z45A 4WYMA 1RNIA 5DCKA 2LIWA 2PEKA 3GZMA 2KG6A 1ZMBA 3CE7A 1M6EX 2JU2A 3DS1A 2KODA 2LIUA 2JQ4A 2FQ2A 2CQ8A 2KG9A 1ACPA 3NY7B 2FQ1A 2GZFA 2KOQA 3G21A 2LPKA 1Q7YQ 1EOQA 2EG5A 2JYLA 1E6JP 2M8LA 4CA3A 3CCSP 2XZ1C 3CXCO 1AUMA 3OW2O 3CCJP 3EJEA 3G1GA 4XFYA 4IZ6A 2VLOA 1KQSO 1BAJA 1KD1Q 3EJBA 3I55P 3RG6C 4H2YC 3CCRP 2CG5B 4QKOA 1YJWP 3DS4A 2QNWA 1IUQA 1VQ9P 1NJIQ 1E0HA 3GZLA 2GDWA 5KP7B 1N8RQ 2GZGA 2EFJA 1VKUA 5CZDB 1FR2A 2JYGA 3G0VA 2KGDA 1VQPP 5JPAA 1L0HA 5F2KA 3CCEP 3DTJA 1YJNP 1A8OA 2KR5A 1YJ9P 5EJDA 3DS5A 2BHVA 1QVFO 5HGNA 2KW2A 2AVAA 3HYBA 4HKGA 2PY8A 1OR5A 1GPJA 3E2DA 1GXGA 2PEQA 1Q86Q 3CCQP 1AF8A 2OTJP 2FHSC 2MVVA 3EJDA 3G6EP 2GZEA 2VLNA 3CMAP 4BPGA 1K8AQ 2QA4P 4QNBA 4U0AA 1IMPA 1VQNP 4UHPB 4MRTC 2PEIA 2LL8A 1K73Q 1KLPA 2L4BA 3Q20A 2X2BA 1M74A 3VRLC 1VQ7P 2K93A 4PXHB 2MF4A 1JJ2O 2MVUA 1AYIA 2VLPA 2GZJA 4U0CA 3CPWO 1DNYA 3LRYA 1RO2A 1QVGO 2EIAA 3G1IA 1VQ8P 2XV6A 3RG2A 2CWOA 1A43A 4DG9A 3H47A 2KOOA 5I4TG 3DPHA 3M1MA 4BPHA 1M1KQ 3NTEA 2GZIA 1VQ6P 2L22A 1VHNA 2K5XA 2VSQA 5F2OA 2LTEA 2DNWA 1YHQP 1EMVA 2FAEA 5HV8A 2N6YA 1L0IA 2K0XA 4GR6A 2K92A 5BS2A
chains in the Genus database with same CATH topology
3H4EA 2PEKA 1YITP 1QVFO 1Q82Q 2PENA 5HGNA 1S72P 3HYBA 1ZMBA 3DS2A 1M6EX 3CCMP 2PY8A 3DS1A 2M8PA 2KODA 3E2DA 1QRJA 2PEQA 1M6NA 1Q86Q 3G26A 3G29A 3CCQP 3MGEA 2OTJP 3G21A 2OTLP 4XFZA 1Q81Q 1Q7YQ 1EOQA 2EG5A 5F2NA 3CCUP 2JYLA 4IPYA 3G6EP 1E6JP 3CMAP 3HZQA 2M8LA 2E1MA 3CCSP 5HGLA 1K8AQ 3WBHA 3CXCO 2QA4P 1AUMA 3DS3A 3OW2O 1W2BO 1M90Q 2ONTA 1VQKP 3CCJP 2XT1A 3G1GA 4QNBA 4XFYA 3P05A 4U0AA 5BS1A 4U0DA 3CC2P 3I56P 1BAJA 1KQSO 1VQNP 3CMEP 2PEIA 1KD1Q 4PH1A 1KC8Q 4U0EA 1K73Q 3I55P 4U0BA 4COCA 3RG6C 1VQ5P 1K30A 4M0IA 3Q20A 3CCRP 2PEJA 1VQLP 4XFXA 2JO0A 1M74A 1YJWP 3DS4A 3VRLC 1VQ7P 4GR2A 1IUQA 2OARA 1JJ2O 1D1DA 1VQ9P 2L6EA 4PH0A 1NJIQ 4U0CA 3CPWO 5HGOA 3CCLP 3B5IA 3LRYA 1VQ4P 1RO2A 1YIJP 1QVGO 2EIAA 1RO0A 4XRQA 3G1IA 1VQ8P 1VQOP 3H0DA 2BUOA 2XV6A 2CWOA 3G4SP 1A43A 2Z44A 3H47A 1N8RQ 2XXMA 3G28A 2LF4A 2EFJA 4U0FA 1VQMP 3DS0A 4COPA 5I4TG 2JYGA 2DGYA 3DPHA 3M1MA 3G0VA 3G71P 1M1KQ 3NTEA 3CD6P 1VQ6P 5HGMA 4XROA 1VQPP 2PEMA 2M8NA 5JPAA 2PEOA 5F2OA 2QEXP 3CCVP 1EIAA 3CC4P 1YHQP 5F2KA 3CCEP 2Z45A 2P9XA 4WYMA 3DTJA 2Z46A 1YJNP 1YI2P 1RNIA 1A8OA 1YJ9P 5DCKA 3DS5A 4GR6A 1K9MQ 2BHVA 3CC7P 5BS2A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1K30 A;  1IUQ A; 
#chains in the Genus database with same CATH topology
 3H4E A;  1YIT P;  3GJN A;  1S72 P;  2FVE A;  3DS2 A;  2KG8 A;  1CEI A;  5KP8 B;  1M6N A;  3G26 A;  2KGE A;  4XFZ A;  1Q81 Q;  5F2N A;  4IPY A;  3HZQ A;  5HGL A;  1F80 D;  2MY5 A;  2AFD A;  1M90 Q;  2ONT A;  2LKI A;  1VQK P;  2FAD A;  1T8K A;  2KOS A;  3CME P;  4PH1 A;  2MD9 A;  4U0E A;  4U0B A;  4COC A;  2JAZ A;  1VQ5 P;  2FQ0 A;  4M0I A;  2GDY A;  2KOR A;  1ZNV A;  2PNG A;  2JO0 A;  5HVC A;  1D1D A;  2L6E A;  4PH0 A;  3CCL P;  4BPF A;  5HGO A;  2EHS A;  2N50 A;  4XRQ A;  4PWV B;  3H0D A;  2BUO A;  2GYK A;  1BXI A;  2LF4 A;  4U0F A;  2FVF A;  1VQM P;  3DS0 A;  4COP A;  2DGY A;  5KP6 B;  3CD6 P;  2JB0 A;  2L0Q A;  2JGP A;  4XRO A;  2PEM A;  2PEO A;  3CCV P;  4H2W C;  2JU1 A;  2P9X A;  2M5R A;  2Z46 A;  1YI2 P;  2KWL A;  1X3O A;  2JBG A;  2KOP A;  1K9M Q;  2GDX A;  1MZ8 A;  3CC7 P;  2EHT A;  1Q82 Q;  2PEN A;  2AF8 A;  4NEO A;  3LMO A;  3CCM P;  2M8P A;  1UNK A;  1QRJ A;  4H2X C;  2AFE A;  3G29 A;  2VLQ A;  3MGE A;  2N98 A;  1HQB A;  2OTL P;  2MR7 A;  1UJZ A;  3CCU P;  2K94 A;  2E1M A;  2L9F A;  3WBH A;  7CEI A;  1GXH A;  1W2B O;  3DS3 A;  2LML A;  2XT1 A;  2N6Z A;  3P05 A;  5BS1 A;  4U0D A;  3CC2 P;  3I56 P;  1Z6M A;  2CGQ A;  2K2Q A;  1IMQ A;  2FVA A;  2ROQ A;  1KC8 Q;  2K0D X;  2CNR A;  1K30 A;  2PEJ A;  4R0M A;  2WPT A;  1VQL P;  4XFX A;  2KGC A;  3B4Q A;  4GR2 A;  2OAR A;  2N5I A;  2ERH A;  2K0Y A;  2N5H A;  3U43 A;  2KGA A;  4F37 A;  3B5I A;  1VQ4 P;  1NQ4 A;  1YIJ P;  1RO0 A;  1VQO P;  3G4S P;  1HY8 A;  2NO8 A;  2Z44 A;  2LOL A;  2XXM A;  3G28 A;  1DV5 A;  2FAC A;  5EW5 E;  3GKL C;  3G71 P;  5HGM A;  2M8N A;  2QEX P;  1EIA A;  2MR8 A;  3CC4 P;  2XZ0 D;  2Z45 A;  4WYM A;  1RNI A;  5DCK A;  2LIW A;  2PEK A;  3GZM A;  2KG6 A;  1ZMB A;  3CE7 A;  1M6E X;  2JU2 A;  3DS1 A;  2KOD A;  2LIU A;  2JQ4 A;  2FQ2 A;  2CQ8 A;  2KG9 A;  1ACP A;  3NY7 B;  2FQ1 A;  2GZF A;  2KOQ A;  3G21 A;  2LPK A;  1Q7Y Q;  1EOQ A;  2EG5 A;  2JYL A;  1E6J P;  2M8L A;  4CA3 A;  3CCS P;  2XZ1 C;  3CXC O;  1AUM A;  3OW2 O;  3CCJ P;  3EJE A;  3G1G A;  4XFY A;  4IZ6 A;  2VLO A;  1KQS O;  1BAJ A;  1KD1 Q;  3EJB A;  3I55 P;  3RG6 C;  4H2Y C;  3CCR P;  2CG5 B;  4QKO A;  1YJW P;  3DS4 A;  2QNW A;  1IUQ A;  1VQ9 P;  1NJI Q;  1E0H A;  3GZL A;  2GDW A;  5KP7 B;  1N8R Q;  2GZG A;  2EFJ A;  1VKU A;  5CZD B;  1FR2 A;  2JYG A;  3G0V A;  2KGD A;  1VQP P;  5JPA A;  1L0H A;  5F2K A;  3CCE P;  3DTJ A;  1YJN P;  1A8O A;  2KR5 A;  1YJ9 P;  5EJD A;  3DS5 A;  2BHV A;  1QVF O;  5HGN A;  2KW2 A;  2AVA A;  3HYB A;  4HKG A;  2PY8 A;  1OR5 A;  1GPJ A;  3E2D A;  1GXG A;  2PEQ A;  1Q86 Q;  3CCQ P;  1AF8 A;  2OTJ P;  2FHS C;  2MVV A;  3EJD A;  3G6E P;  2GZE A;  2VLN A;  3CMA P;  4BPG A;  1K8A Q;  2QA4 P;  4QNB A;  4U0A A;  1IMP A;  1VQN P;  4UHP B;  4MRT C;  2PEI A;  2LL8 A;  1K73 Q;  1KLP A;  2L4B A;  3Q20 A;  2X2B A;  1M74 A;  3VRL C;  1VQ7 P;  2K93 A;  4PXH B;  2MF4 A;  1JJ2 O;  2MVU A;  1AYI A;  2VLP A;  2GZJ A;  4U0C A;  3CPW O;  1DNY A;  3LRY A;  1RO2 A;  1QVG O;  2EIA A;  3G1I A;  1VQ8 P;  2XV6 A;  3RG2 A;  2CWO A;  1A43 A;  4DG9 A;  3H47 A;  2KOO A;  5I4T G;  3DPH A;  3M1M A;  4BPH A;  1M1K Q;  3NTE A;  2GZI A;  1VQ6 P;  2L22 A;  1VHN A;  2K5X A;  2VSQ A;  5F2O A;  2LTE A;  2DNW A;  1YHQ P;  1EMV A;  2FAE A;  5HV8 A;  2N6Y A;  1L0I A;  2K0X A;  4GR6 A;  2K92 A;  5BS2 A; 
#chains in the Genus database with same CATH homology
 3H4E A;  2PEK A;  1YIT P;  1QVF O;  1Q82 Q;  2PEN A;  5HGN A;  1S72 P;  3HYB A;  1ZMB A;  3DS2 A;  1M6E X;  3CCM P;  2PY8 A;  3DS1 A;  2M8P A;  2KOD A;  3E2D A;  1QRJ A;  2PEQ A;  1M6N A;  1Q86 Q;  3G26 A;  3G29 A;  3CCQ P;  3MGE A;  2OTJ P;  3G21 A;  2OTL P;  4XFZ A;  1Q81 Q;  1Q7Y Q;  1EOQ A;  2EG5 A;  5F2N A;  3CCU P;  2JYL A;  4IPY A;  3G6E P;  1E6J P;  3CMA P;  3HZQ A;  2M8L A;  2E1M A;  3CCS P;  5HGL A;  1K8A Q;  3WBH A;  3CXC O;  2QA4 P;  1AUM A;  3DS3 A;  3OW2 O;  1W2B O;  1M90 Q;  2ONT A;  1VQK P;  3CCJ P;  2XT1 A;  3G1G A;  4QNB A;  4XFY A;  3P05 A;  4U0A A;  5BS1 A;  4U0D A;  3CC2 P;  3I56 P;  1BAJ A;  1KQS O;  1VQN P;  3CME P;  2PEI A;  1KD1 Q;  4PH1 A;  1KC8 Q;  4U0E A;  1K73 Q;  3I55 P;  4U0B A;  4COC A;  3RG6 C;  1VQ5 P;  1K30 A;  4M0I A;  3Q20 A;  3CCR P;  2PEJ A;  1VQL P;  4XFX A;  2JO0 A;  1M74 A;  1YJW P;  3DS4 A;  3VRL C;  1VQ7 P;  4GR2 A;  1IUQ A;  2OAR A;  1JJ2 O;  1D1D A;  1VQ9 P;  2L6E A;  4PH0 A;  1NJI Q;  4U0C A;  3CPW O;  5HGO A;  3CCL P;  3B5I A;  3LRY A;  1VQ4 P;  1RO2 A;  1YIJ P;  1QVG O;  2EIA A;  1RO0 A;  4XRQ A;  3G1I A;  1VQ8 P;  1VQO P;  3H0D A;  2BUO A;  2XV6 A;  2CWO A;  3G4S P;  1A43 A;  2Z44 A;  3H47 A;  1N8R Q;  2XXM A;  3G28 A;  2LF4 A;  2EFJ A;  4U0F A;  1VQM P;  3DS0 A;  4COP A;  5I4T G;  2JYG A;  2DGY A;  3DPH A;  3M1M A;  3G0V A;  3G71 P;  1M1K Q;  3NTE A;  3CD6 P;  1VQ6 P;  5HGM A;  4XRO A;  1VQP P;  2PEM A;  2M8N A;  5JPA A;  2PEO A;  5F2O A;  2QEX P;  3CCV P;  1EIA A;  3CC4 P;  1YHQ P;  5F2K A;  3CCE P;  2Z45 A;  2P9X A;  4WYM A;  3DTJ A;  2Z46 A;  1YJN P;  1YI2 P;  1RNI A;  1A8O A;  1YJ9 P;  5DCK A;  3DS5 A;  4GR6 A;  1K9M Q;  2BHV A;  3CC7 P;  5BS2 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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