1IWAB

Rubisco from galdieria partita
Total Genus 32
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
32
sequence length
138
structure length
138
Chain Sequence
MRITQGTFSFLPDLTDEQIKKQIDYMISKKLAIGIEYTNDIHPRNAYWEIWGLPLFDVTDPAAVLFEINACRKARSNFYIKVVGFSSVRGIESTIISFIVNRPKHEPGFNLMRQEDKSRSIKYTIHSYESYKPEDERY
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Lyase
molecule keywords ribulose-1,5-bisphosphate carboxylase/oxygenase large subuni
publication title X-Ray Structure of Galdieria Rubisco Complexed with one sulfate ion per active site
pubmed doi rcsb
total genus 32
structure length 138
sequence length 138
chains with identical sequence D, F, H, J, L, N, P
ec nomenclature ec 4.1.1.39: Ribulose-bisphosphate carboxylase.
pdb deposition date 2002-04-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF00101 RuBisCO_small Ribulose bisphosphate carboxylase, small chain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.190.10 Alpha Beta 2-Layer Sandwich Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase Ribulose bisphosphate carboxylase, small subunit 1iwaB00
1RLCS 3ZXWB 1RCOC 1RLDS 4HHHS 1RBLI 3AXMS 1UZDC 1RBOC 2V68I 1BWVS 1IR21 4RUBS 8RUCI 3AXKS 1UWAC 2YBVB 4F0KB 1EJ7S 4MKVS 2V63I 2V6AI 4F0HB 2VDHI 1UW9C 1AUSS 1AA1C 1IWAB 1UPMC 1UPPI 1RXOC 4F0MB 2V69I 1RSCI 2VDII 1UZHC 1RCXC 3RUBS 1BXNI 1IR1S 1WDDS 2V67I 1SVDM 1GK8I
chains in the Genus database with same CATH superfamily
1AD2A 1RLCS 3ZXWB 1RCOC 1RLDS 4HHHS 1RBLI 3AXMS 1UZDC 1RBOC 2V68I 1BWVS 5DM60 4QVIA 1IR21 3UMYA 4RUBS 8RUCI 3AXKS 3FPNA 1UWAC 2YBVB 4F0KB 1CJSA 1EJ7S 4REOA 4MKVS 2V63I 2V6AI 4F0HB 2VDHI 1UW9C 1DWUA 1I2AA 4DFCB 3TG8A 1AUSS 1AA1C 1IWAB 1UPMC 4QG3A 3U4MA 1MZPA 1UPPI 1RXOC 2FHZA 2V69I 4F0MB 1RSCI 2VDII 4LQ4A 3QOYA 1UZHC 2DFXI 1ZHOA 4QGBA 3ZQJA 4F9TA 1RCXC 3RUBS 1U63A 5DM70 2HW8A 1BXNI 1IR1S 1WDDS 2V67I 3U56A 1SVDM 1GK8I
chains in the Genus database with same CATH topology
1RLCS 3ZXWB 1RCOC 1RLDS 4HHHS 1RBLI 3AXMS 1UZDC 1RBOC 2V68I 1BWVS 1IR21 4RUBS 8RUCI 3AXKS 1UWAC 2YBVB 4F0KB 1EJ7S 4MKVS 2V63I 2V6AI 4F0HB 2VDHI 1UW9C 1AUSS 1AA1C 1IWAB 1UPMC 1UPPI 1RXOC 4F0MB 2V69I 1RSCI 2VDII 1UZHC 1RCXC 3RUBS 1BXNI 1IR1S 1WDDS 2V67I 1SVDM 1GK8I
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1RLC S;  3ZXW B;  1RCO C;  1RLD S;  4HHH S;  1RBL I;  3AXM S;  1UZD C;  1RBO C;  2V68 I;  1BWV S;  1IR2 1;  4RUB S;  8RUC I;  3AXK S;  1UWA C;  2YBV B;  4F0K B;  1EJ7 S;  4MKV S;  2V63 I;  2V6A I;  4F0H B;  2VDH I;  1UW9 C;  1AUS S;  1AA1 C;  1IWA B;  1UPM C;  1UPP I;  1RXO C;  4F0M B;  2V69 I;  1RSC I;  2VDI I;  1UZH C;  1RCX C;  3RUB S;  1BXN I;  1IR1 S;  1WDD S;  2V67 I;  1SVD M;  1GK8 I; 
#chains in the Genus database with same CATH topology
 1AD2 A;  1RLC S;  3ZXW B;  1RCO C;  1RLD S;  4HHH S;  1RBL I;  3AXM S;  1UZD C;  1RBO C;  2V68 I;  1BWV S;  5DM6 0;  4QVI A;  1IR2 1;  3UMY A;  4RUB S;  8RUC I;  3AXK S;  3FPN A;  1UWA C;  2YBV B;  4F0K B;  1CJS A;  1EJ7 S;  4REO A;  4MKV S;  2V63 I;  2V6A I;  4F0H B;  2VDH I;  1UW9 C;  1DWU A;  1I2A A;  4DFC B;  3TG8 A;  1AUS S;  1AA1 C;  1IWA B;  1UPM C;  4QG3 A;  3U4M A;  1MZP A;  1UPP I;  1RXO C;  2FHZ A;  2V69 I;  4F0M B;  1RSC I;  2VDI I;  4LQ4 A;  3QOY A;  1UZH C;  2DFX I;  1ZHO A;  4QGB A;  3ZQJ A;  4F9T A;  1RCX C;  3RUB S;  1U63 A;  5DM7 0;  2HW8 A;  1BXN I;  1IR1 S;  1WDD S;  2V67 I;  3U56 A;  1SVD M;  1GK8 I; 
#chains in the Genus database with same CATH homology
 1RLC S;  3ZXW B;  1RCO C;  1RLD S;  4HHH S;  1RBL I;  3AXM S;  1UZD C;  1RBO C;  2V68 I;  1BWV S;  1IR2 1;  4RUB S;  8RUC I;  3AXK S;  1UWA C;  2YBV B;  4F0K B;  1EJ7 S;  4MKV S;  2V63 I;  2V6A I;  4F0H B;  2VDH I;  1UW9 C;  1AUS S;  1AA1 C;  1IWA B;  1UPM C;  1UPP I;  1RXO C;  4F0M B;  2V69 I;  1RSC I;  2VDI I;  1UZH C;  1RCX C;  3RUB S;  1BXN I;  1IR1 S;  1WDD S;  2V67 I;  1SVD M;  1GK8 I; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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