1IWBG

Crystal structure of diol dehydratase
Total Genus 51
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
51
sequence length
137
structure length
137
Chain Sequence
SARVSDYPLANKHPEWVKTATNKTLDDFTLENVLSNKVTAQDMRITPETLRLQASIAKDAGRDRLAMNFERAAELTAVPDDRILEIYNALRPYRSTKEELLAIADDLESRYQAKICAAFVREAATLYVERKKLKGDD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Substrate-induced conformational change of a coenzyme B12-dependent enzyme: crystal structure of the substrate-free form of diol dehydratase
pubmed doi rcsb
source organism Klebsiella oxytoca
molecule tags Lyase
molecule keywords DIOL DEHYDRATASE alpha chain
total genus 51
structure length 137
sequence length 137
chains with identical sequence M
ec nomenclature ec 4.2.1.28: Propanediol dehydratase.
pdb deposition date 2002-05-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
G PF02287 Dehydratase_SU Dehydratase small subunit
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1510.20 Mainly Alpha Orthogonal Bundle Hypothetical Protein Yqey; Chain: A; domain1 Hypothetical Protein Yqey; Chain: A; domain1 1iwbG02
1UC4G 1DIOG 1MMFG 1EGVG 1IWPG 3AUJG 1EGMG 1IWBG 1UC5G 1EEXG
chains in the Genus database with same CATH superfamily
1UC4G 1DIOG 1NG6A 1MMFG 1EGVG 1IWPG 1Z2ZA 3AUJG 1EGMG 1IWBG 1UC5G 1EEXG
chains in the Genus database with same CATH topology
1UC4G 1DIOG 1NG6A 1MMFG 1EGVG 1IWPG 1Z2ZA 3AUJG 1EGMG 1IWBG 1UC5G 1EEXG
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1UC4 G;  1DIO G;  1MMF G;  1EGV G;  1IWP G;  3AUJ G;  1EGM G;  1IWB G;  1UC5 G;  1EEX G; 
#chains in the Genus database with same CATH topology
 1UC4 G;  1DIO G;  1NG6 A;  1MMF G;  1EGV G;  1IWP G;  1Z2Z A;  3AUJ G;  1EGM G;  1IWB G;  1UC5 G;  1EEX G; 
#chains in the Genus database with same CATH homology
 1UC4 G;  1DIO G;  1NG6 A;  1MMF G;  1EGV G;  1IWP G;  1Z2Z A;  3AUJ G;  1EGM G;  1IWB G;  1UC5 G;  1EEX G; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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