1IZ5A

Pyrococcus furiosus pcna mutant (met73leu, asp143ala, asp147ala): orthorhombic form
Total Genus 60
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
60
sequence length
245
structure length
240
Chain Sequence
PFEIVFEGAKEFAQLIDTASKLIDEAAFKVTEDGISMRAMDPSRVVLIDLNLPSSIFSKYEVVEPETIGVNLDHLKKILKRGKAKDTLILKKGEENFLEITIQGTATRTFRVPLIDVEEPELPFTAKVVVLGEVLKAAVKAASLVSDSIKFIARENEFIMKAEGETQEVEIKLTLEDEGLLDIEVQEETKSAYGVSYLSDMVKGLGKADEVTIKFGNEMPMQMEYYIRDEGRLTFLLAPR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Intermolecular ion pairs maintain the toroidal structure of Pyrococcus furiosus PCNA
pubmed doi rcsb
molecule keywords Proliferating cell nuclear antigen
molecule tags Dna binding protein
source organism Pyrococcus furiosus
total genus 60
structure length 240
sequence length 245
chains with identical sequence B
ec nomenclature
pdb deposition date 2002-09-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00705 PCNA_N Proliferating cell nuclear antigen, N-terminal domain
A PF02747 PCNA_C Proliferating cell nuclear antigen, C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.70.10.10 Alpha Beta Box Proliferating Cell Nuclear Antigen Proliferating Cell Nuclear Antigen 1iz5A00
3F1WA 2HIKB 2IZOC 1UD9A 1B77A 3FDSC 5E0VA 2ZVMA 2IO4B 1IZ4A 5AUJA 1U7BA 1DMLA 1B8HA 3VKXA 2HIKA 3LX2A 2ZVWA 3AIZC 3AIXB 2IO4A 3U61F 3G65C 3U60F 3LX1A 3FDSD 3A1JB 5IWDA 2ZVLA 3HSLX 4YHRA 1RWZA 3AIXA 4L6PA 2IX2C 3V62B 5A6DA 1VYJA 3GPNA 2HIIB 3A1JA 3I2MX 5JNED 1SXJF 2NTIC 3TBLA 3K4XA 3GGRB 2HIIA 4ZTDA 3V61B 5E0UA 2HIKC 2AWAA 1CZDA 3AIZA 3GGRA 2OD8A 3P91A 2IJXA 2IZOB 4D2GA 3U5ZF 5IXAA 5E0TA 1ISQA 4CS5A 3A2FB 5H0TA 1IZ5A 1RXZA 2Z0LA 2ZVKA 2IX2A 3IFVA 2NTIB 3P83A 1YYPA 1VYMA 3WGWA 5IY4A 3A1JC 2ZVVA 5DAIA 3P87A 3G65B 4L60A 4RJFA 2NTIA 3HI8A 2IX2B 2HIIC 4TR6A 3G65A 3V60B 1RXMA 1U76A 3GPMA 5CFKA 3GGRC 1UL1A 5HACA 5B7OA 1PLRA 2AVTA 1AXCA 1PLQA 1GE8A 1T6LA 5DA7A 1W60A 4HK1A
chains in the Genus database with same CATH superfamily
3F1WA 2HIKB 2IZOC 1UD9A 1B77A 3FDSC 5E0VA 2ZVMA 2IO4B 1IZ4A 5AUJA 1U7BA 1DMLA 1B8HA 3VKXA 2HIKA 3LX2A 2ZVWA 3AIZC 3AIXB 2IO4A 3U61F 3G65C 3U60F 3LX1A 3FDSD 3A1JB 5IWDA 2ZVLA 3HSLX 4YHRA 1RWZA 3AIXA 4L6PA 2IX2C 3V62B 5A6DA 1VYJA 3GPNA 2HIIB 3A1JA 3I2MX 5JNED 1SXJF 2NTIC 3TBLA 3K4XA 3GGRB 2HIIA 4ZTDA 3V61B 5E0UA 2HIKC 2AWAA 1CZDA 3AIZA 3GGRA 2OD8A 3P91A 2IJXA 2IZOB 4D2GA 3U5ZF 5IXAA 5E0TA 1ISQA 4CS5A 3A2FB 5H0TA 1IZ5A 1RXZA 2Z0LA 2ZVKA 2IX2A 3IFVA 2NTIB 3P83A 1YYPA 1VYMA 3WGWA 5IY4A 3A1JC 2ZVVA 5DAIA 3P87A 3G65B 4L60A 4RJFA 2NTIA 3HI8A 2IX2B 2HIIC 4TR6A 3G65A 3V60B 1RXMA 1U76A 3GPMA 5CFKA 3GGRC 1UL1A 5HACA 5B7OA 1PLRA 2AVTA 1AXCA 1PLQA 1GE8A 1T6LA 5DA7A 1W60A 4HK1A
chains in the Genus database with same CATH topology
3F1WA 2HIKB 2IZOC 1UD9A 1B77A 3FDSC 5E0VA 2ZVMA 2IO4B 1IZ4A 5AUJA 1U7BA 1DMLA 1B8HA 3VKXA 2HIKA 3LX2A 2ZVWA 3AIZC 3AIXB 2IO4A 3U61F 3G65C 3U60F 3LX1A 3FDSD 3A1JB 5IWDA 2ZVLA 3HSLX 4YHRA 1RWZA 3AIXA 4L6PA 2IX2C 3V62B 5A6DA 1VYJA 3GPNA 2HIIB 3A1JA 3I2MX 5JNED 1SXJF 2NTIC 3TBLA 3K4XA 3GGRB 2HIIA 4ZTDA 3V61B 5E0UA 2HIKC 2AWAA 1CZDA 3AIZA 3GGRA 2OD8A 3P91A 2IJXA 2IZOB 4D2GA 3U5ZF 5IXAA 5E0TA 1ISQA 4CS5A 3A2FB 5H0TA 1IZ5A 1RXZA 2Z0LA 2ZVKA 2IX2A 3IFVA 2NTIB 3P83A 1YYPA 1VYMA 3WGWA 5IY4A 3A1JC 2ZVVA 5DAIA 3P87A 3G65B 4L60A 4RJFA 2NTIA 3HI8A 2IX2B 2HIIC 4TR6A 3G65A 3V60B 1RXMA 1U76A 3GPMA 5CFKA 3GGRC 1UL1A 5HACA 5B7OA 1PLRA 2AVTA 1AXCA 1PLQA 1GE8A 1T6LA 5DA7A 1W60A 4HK1A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3F1W A;  2HIK B;  2IZO C;  1UD9 A;  1B77 A;  3FDS C;  5E0V A;  2ZVM A;  2IO4 B;  1IZ4 A;  5AUJ A;  1U7B A;  1DML A;  1B8H A;  3VKX A;  2HIK A;  3LX2 A;  2ZVW A;  3AIZ C;  3AIX B;  2IO4 A;  3U61 F;  3G65 C;  3U60 F;  3LX1 A;  3FDS D;  3A1J B;  5IWD A;  2ZVL A;  3HSL X;  4YHR A;  1RWZ A;  3AIX A;  4L6P A;  2IX2 C;  3V62 B;  5A6D A;  1VYJ A;  3GPN A;  2HII B;  3A1J A;  3I2M X;  5JNE D;  1SXJ F;  2NTI C;  3TBL A;  3K4X A;  3GGR B;  2HII A;  4ZTD A;  3V61 B;  5E0U A;  2HIK C;  2AWA A;  1CZD A;  3AIZ A;  3GGR A;  2OD8 A;  3P91 A;  2IJX A;  2IZO B;  4D2G A;  3U5Z F;  5IXA A;  5E0T A;  1ISQ A;  4CS5 A;  3A2F B;  5H0T A;  1IZ5 A;  1RXZ A;  2Z0L A;  2ZVK A;  2IX2 A;  3IFV A;  2NTI B;  3P83 A;  1YYP A;  1VYM A;  3WGW A;  5IY4 A;  3A1J C;  2ZVV A;  5DAI A;  3P87 A;  3G65 B;  4L60 A;  4RJF A;  2NTI A;  3HI8 A;  2IX2 B;  2HII C;  4TR6 A;  3G65 A;  3V60 B;  1RXM A;  1U76 A;  3GPM A;  5CFK A;  3GGR C;  1UL1 A;  5HAC A;  5B7O A;  1PLR A;  2AVT A;  1AXC A;  1PLQ A;  1GE8 A;  1T6L A;  5DA7 A;  1W60 A;  4HK1 A; 
#chains in the Genus database with same CATH topology
 3F1W A;  2HIK B;  2IZO C;  1UD9 A;  1B77 A;  3FDS C;  5E0V A;  2ZVM A;  2IO4 B;  1IZ4 A;  5AUJ A;  1U7B A;  1DML A;  1B8H A;  3VKX A;  2HIK A;  3LX2 A;  2ZVW A;  3AIZ C;  3AIX B;  2IO4 A;  3U61 F;  3G65 C;  3U60 F;  3LX1 A;  3FDS D;  3A1J B;  5IWD A;  2ZVL A;  3HSL X;  4YHR A;  1RWZ A;  3AIX A;  4L6P A;  2IX2 C;  3V62 B;  5A6D A;  1VYJ A;  3GPN A;  2HII B;  3A1J A;  3I2M X;  5JNE D;  1SXJ F;  2NTI C;  3TBL A;  3K4X A;  3GGR B;  2HII A;  4ZTD A;  3V61 B;  5E0U A;  2HIK C;  2AWA A;  1CZD A;  3AIZ A;  3GGR A;  2OD8 A;  3P91 A;  2IJX A;  2IZO B;  4D2G A;  3U5Z F;  5IXA A;  5E0T A;  1ISQ A;  4CS5 A;  3A2F B;  5H0T A;  1IZ5 A;  1RXZ A;  2Z0L A;  2ZVK A;  2IX2 A;  3IFV A;  2NTI B;  3P83 A;  1YYP A;  1VYM A;  3WGW A;  5IY4 A;  3A1J C;  2ZVV A;  5DAI A;  3P87 A;  3G65 B;  4L60 A;  4RJF A;  2NTI A;  3HI8 A;  2IX2 B;  2HII C;  4TR6 A;  3G65 A;  3V60 B;  1RXM A;  1U76 A;  3GPM A;  5CFK A;  3GGR C;  1UL1 A;  5HAC A;  5B7O A;  1PLR A;  2AVT A;  1AXC A;  1PLQ A;  1GE8 A;  1T6L A;  5DA7 A;  1W60 A;  4HK1 A; 
#chains in the Genus database with same CATH homology
 3F1W A;  2HIK B;  2IZO C;  1UD9 A;  1B77 A;  3FDS C;  5E0V A;  2ZVM A;  2IO4 B;  1IZ4 A;  5AUJ A;  1U7B A;  1DML A;  1B8H A;  3VKX A;  2HIK A;  3LX2 A;  2ZVW A;  3AIZ C;  3AIX B;  2IO4 A;  3U61 F;  3G65 C;  3U60 F;  3LX1 A;  3FDS D;  3A1J B;  5IWD A;  2ZVL A;  3HSL X;  4YHR A;  1RWZ A;  3AIX A;  4L6P A;  2IX2 C;  3V62 B;  5A6D A;  1VYJ A;  3GPN A;  2HII B;  3A1J A;  3I2M X;  5JNE D;  1SXJ F;  2NTI C;  3TBL A;  3K4X A;  3GGR B;  2HII A;  4ZTD A;  3V61 B;  5E0U A;  2HIK C;  2AWA A;  1CZD A;  3AIZ A;  3GGR A;  2OD8 A;  3P91 A;  2IJX A;  2IZO B;  4D2G A;  3U5Z F;  5IXA A;  5E0T A;  1ISQ A;  4CS5 A;  3A2F B;  5H0T A;  1IZ5 A;  1RXZ A;  2Z0L A;  2ZVK A;  2IX2 A;  3IFV A;  2NTI B;  3P83 A;  1YYP A;  1VYM A;  3WGW A;  5IY4 A;  3A1J C;  2ZVV A;  5DAI A;  3P87 A;  3G65 B;  4L60 A;  4RJF A;  2NTI A;  3HI8 A;  2IX2 B;  2HII C;  4TR6 A;  3G65 A;  3V60 B;  1RXM A;  1U76 A;  3GPM A;  5CFK A;  3GGR C;  1UL1 A;  5HAC A;  5B7O A;  1PLR A;  2AVT A;  1AXC A;  1PLQ A;  1GE8 A;  1T6L A;  5DA7 A;  1W60 A;  4HK1 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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