1J0QA

Solution structure of oxidized bovine microsomal cytochrome b5 mutant v61h
Total Genus 24
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
24
sequence length
82
structure length
82
Chain Sequence
AVKYYTLEEIQKHNNSKSTWLILHYKVYDLTKFLEEHPGGEEVLREQAGGDATENFEDHGHSTDARELSKTFIIGELHPDDR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Electron transport
molecule keywords cytochrome b5
publication title The solution structure of the oxidized bovine microsomal cytochrome b5 mutant V61H
pubmed doi rcsb
source organism Bos taurus
total genus 24
structure length 82
sequence length 82
ec nomenclature
pdb deposition date 2002-11-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00173 Cyt-b5 Cytochrome b5-like Heme/Steroid binding domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.120.10 Alpha Beta Roll Flavocytochrome B2; Chain A, domain 1 Cytochrome b5-like heme/steroid binding domain 1j0qA00
1ICCA 3X34A 1LTDA 4X8YA 1J0QA 1BFXA 1LQXA 1AWPA 2M33A 1AQAA 1EHBA 3MUSA 3LF5A 1LJ0A 3NERA 1I8CA 1IETA 1MJ4A 1CYOA 2I96A 4HINA 4B8NA 3X33A 1KBIA 1DO9A 1AW3A 4HILA 1B5BA 3X35A 1BLVA 2IBJA 1J03A 1I87A 1FCBA 1HKOA 1M2IA 1IB7A 1B5MA 1M59A 1AXXA 1NX7A 1T0GA 3KS0A 1I5UA 1M20A 2I89A 1IEUA 1JEXA 1F03A 1LR6A 1B5AA 1MNYA 1M2MA 1SH4A 3OZZB 2KEOA 3X32A 1X3XA 2AXXA 1SOXA 1U9MA 1ES1A 1EUEA 1U9UA 1F04A 1LDCA 1CXYA 1LCOA 2OZ0A
chains in the Genus database with same CATH superfamily
1ICCA 3X34A 1LTDA 4X8YA 1J0QA 1BFXA 1LQXA 1AWPA 2M33A 1AQAA 1EHBA 3MUSA 3LF5A 1LJ0A 3NERA 1I8CA 1IETA 1MJ4A 1CYOA 2I96A 4HINA 4B8NA 3X33A 1KBIA 1DO9A 1AW3A 4HILA 1B5BA 3X35A 1BLVA 2IBJA 1J03A 1I87A 1FCBA 1HKOA 1M2IA 1IB7A 1B5MA 1M59A 1AXXA 1NX7A 1T0GA 3KS0A 1I5UA 1M20A 2I89A 1IEUA 1JEXA 1F03A 1LR6A 1B5AA 1MNYA 1M2MA 1SH4A 3OZZB 2KEOA 3X32A 1X3XA 2AXXA 1SOXA 1U9MA 1ES1A 1EUEA 1U9UA 1F04A 1LDCA 1CXYA 1LCOA 2OZ0A
chains in the Genus database with same CATH topology
1ICCA 3X34A 1LTDA 4X8YA 1J0QA 1BFXA 1LQXA 1AWPA 2M33A 1AQAA 1EHBA 3MUSA 3LF5A 1LJ0A 3NERA 1I8CA 1IETA 1MJ4A 1CYOA 2I96A 4HINA 4B8NA 3X33A 1KBIA 1DO9A 1AW3A 4HILA 1B5BA 3X35A 1BLVA 2IBJA 1J03A 1I87A 1FCBA 1HKOA 1M2IA 1IB7A 1B5MA 1M59A 1AXXA 1NX7A 1T0GA 3KS0A 1I5UA 1M20A 2I89A 1IEUA 1JEXA 1F03A 1LR6A 1B5AA 1MNYA 1M2MA 1SH4A 3OZZB 2KEOA 3X32A 1X3XA 2AXXA 1SOXA 1U9MA 1ES1A 1EUEA 1U9UA 1F04A 1LDCA 1CXYA 1LCOA 2OZ0A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1ICC A;  3X34 A;  1LTD A;  4X8Y A;  1J0Q A;  1BFX A;  1LQX A;  1AWP A;  2M33 A;  1AQA A;  1EHB A;  3MUS A;  3LF5 A;  1LJ0 A;  3NER A;  1I8C A;  1IET A;  1MJ4 A;  1CYO A;  2I96 A;  4HIN A;  4B8N A;  3X33 A;  1KBI A;  1DO9 A;  1AW3 A;  4HIL A;  1B5B A;  3X35 A;  1BLV A;  2IBJ A;  1J03 A;  1I87 A;  1FCB A;  1HKO A;  1M2I A;  1IB7 A;  1B5M A;  1M59 A;  1AXX A;  1NX7 A;  1T0G A;  3KS0 A;  1I5U A;  1M20 A;  2I89 A;  1IEU A;  1JEX A;  1F03 A;  1LR6 A;  1B5A A;  1MNY A;  1M2M A;  1SH4 A;  3OZZ B;  2KEO A;  3X32 A;  1X3X A;  2AXX A;  1SOX A;  1U9M A;  1ES1 A;  1EUE A;  1U9U A;  1F04 A;  1LDC A;  1CXY A;  1LCO A;  2OZ0 A; 
#chains in the Genus database with same CATH topology
 1ICC A;  3X34 A;  1LTD A;  4X8Y A;  1J0Q A;  1BFX A;  1LQX A;  1AWP A;  2M33 A;  1AQA A;  1EHB A;  3MUS A;  3LF5 A;  1LJ0 A;  3NER A;  1I8C A;  1IET A;  1MJ4 A;  1CYO A;  2I96 A;  4HIN A;  4B8N A;  3X33 A;  1KBI A;  1DO9 A;  1AW3 A;  4HIL A;  1B5B A;  3X35 A;  1BLV A;  2IBJ A;  1J03 A;  1I87 A;  1FCB A;  1HKO A;  1M2I A;  1IB7 A;  1B5M A;  1M59 A;  1AXX A;  1NX7 A;  1T0G A;  3KS0 A;  1I5U A;  1M20 A;  2I89 A;  1IEU A;  1JEX A;  1F03 A;  1LR6 A;  1B5A A;  1MNY A;  1M2M A;  1SH4 A;  3OZZ B;  2KEO A;  3X32 A;  1X3X A;  2AXX A;  1SOX A;  1U9M A;  1ES1 A;  1EUE A;  1U9U A;  1F04 A;  1LDC A;  1CXY A;  1LCO A;  2OZ0 A; 
#chains in the Genus database with same CATH homology
 1ICC A;  3X34 A;  1LTD A;  4X8Y A;  1J0Q A;  1BFX A;  1LQX A;  1AWP A;  2M33 A;  1AQA A;  1EHB A;  3MUS A;  3LF5 A;  1LJ0 A;  3NER A;  1I8C A;  1IET A;  1MJ4 A;  1CYO A;  2I96 A;  4HIN A;  4B8N A;  3X33 A;  1KBI A;  1DO9 A;  1AW3 A;  4HIL A;  1B5B A;  3X35 A;  1BLV A;  2IBJ A;  1J03 A;  1I87 A;  1FCB A;  1HKO A;  1M2I A;  1IB7 A;  1B5M A;  1M59 A;  1AXX A;  1NX7 A;  1T0G A;  3KS0 A;  1I5U A;  1M20 A;  2I89 A;  1IEU A;  1JEX A;  1F03 A;  1LR6 A;  1B5A A;  1MNY A;  1M2M A;  1SH4 A;  3OZZ B;  2KEO A;  3X32 A;  1X3X A;  2AXX A;  1SOX A;  1U9M A;  1ES1 A;  1EUE A;  1U9U A;  1F04 A;  1LDC A;  1CXY A;  1LCO A;  2OZ0 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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