1J31A

Crystal structure of hypothetical protein ph0642 from pyrococcus horikoshii
Total Genus 82
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
82
sequence length
262
structure length
262
Chain Sequence
MVKVGYIQMEPKILELDKNYSKAEKLIKEASKEGAKLVVLPELFDTGYNFESREEVFDVAQQIPEGETTTFLMELARELGLYIVAGTAEKSGNYLYNSAVVVGPRGYIGKYRKIHLFYREKVFFEPGDLGFKVFDIGFAKVGVMICFDWFFPESARTLALKGAEIIAHPANLVMPYAPRAMPIRALENRVYTITADRVGEERGLKFIGKSLIASPKAEVLSIASETEEEIGVVEIDLNLARNKRLNDMNDIFKDRREEYYFR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Structural genomics, unknown function
molecule keywords Hypothetical protein PH0642
publication title Crystal structure of hypothetical protein PH0642 from Pyrococcus horikoshii at 1.6A resolution.
pubmed doi rcsb
source organism Pyrococcus horikoshii
total genus 82
structure length 262
sequence length 262
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2003-01-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00795 CN_hydrolase Carbon-nitrogen hydrolase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.60.110.10 Alpha Beta 4-Layer Sandwich Nitrilase/N-carbamoyl-D-aminoacid amidohydrolase Carbon-nitrogen hydrolase 1j31A00
4GYNA 4CYFA 4IZWA 4CYGA 2E2LA 3HKXA 4HG5A 5JQNA 2GGLA 2E11A 4HG3A 4IZVA 4IZUA 3SDBA 3SEQA 4F4HA 4IZTA 4KZFA 1UF7A 3N05A 3WUYA 5H8JA 4CYYA 4GYLA 1UF4A 2PLQA 3KLCA 3P8KA 1EMSA 4IZSA 5H8IA 4H5UA 2GGKA 2W1VA 3KI8A 1FO6A 2DYVA 3SYTA 4LF0A 2VHIA 1ERZA 5KHAA 2E2KA 1UF8A 1J31A 3ILVA 5H8LA 5H8KA 2VHHA 4HGDA 2UXYA 3IW3A 1F89A 3SEZA 1UF5A 3IVZA 3SZGA 3DLAA 2DYUA
chains in the Genus database with same CATH superfamily
4GYNA 4CYFA 4IZWA 4CYGA 2E2LA 3HKXA 4HG5A 5JQNA 2GGLA 2E11A 4HG3A 4IZVA 4IZUA 3SDBA 3SEQA 4F4HA 4IZTA 4KZFA 1UF7A 3N05A 3WUYA 5H8JA 4CYYA 4GYLA 1UF4A 2PLQA 3KLCA 3P8KA 1EMSA 4IZSA 5H8IA 4H5UA 2GGKA 2W1VA 3KI8A 1FO6A 2DYVA 3SYTA 4LF0A 2VHIA 1ERZA 5KHAA 2E2KA 1UF8A 1J31A 3ILVA 5H8LA 5H8KA 2VHHA 4HGDA 2UXYA 3IW3A 1F89A 3SEZA 1UF5A 3IVZA 3SZGA 3DLAA 2DYUA
chains in the Genus database with same CATH topology
4GYNA 4CYFA 4IZWA 4CYGA 2E2LA 3HKXA 4HG5A 5JQNA 2GGLA 2E11A 4HG3A 4IZVA 4IZUA 3SDBA 3SEQA 4F4HA 4IZTA 4KZFA 1UF7A 3N05A 3WUYA 5H8JA 4CYYA 4GYLA 1UF4A 2PLQA 3KLCA 3P8KA 1EMSA 4IZSA 5H8IA 4H5UA 2GGKA 2W1VA 3KI8A 1FO6A 2DYVA 3SYTA 4LF0A 2VHIA 1ERZA 5KHAA 2E2KA 1UF8A 1J31A 3ILVA 5H8LA 5H8KA 2VHHA 4HGDA 2UXYA 3IW3A 1F89A 3SEZA 1UF5A 3IVZA 3SZGA 3DLAA 2DYUA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4GYN A;  4CYF A;  4IZW A;  4CYG A;  2E2L A;  3HKX A;  4HG5 A;  5JQN A;  2GGL A;  2E11 A;  4HG3 A;  4IZV A;  4IZU A;  3SDB A;  3SEQ A;  4F4H A;  4IZT A;  4KZF A;  1UF7 A;  3N05 A;  3WUY A;  5H8J A;  4CYY A;  4GYL A;  1UF4 A;  2PLQ A;  3KLC A;  3P8K A;  1EMS A;  4IZS A;  5H8I A;  4H5U A;  2GGK A;  2W1V A;  3KI8 A;  1FO6 A;  2DYV A;  3SYT A;  4LF0 A;  2VHI A;  1ERZ A;  5KHA A;  2E2K A;  1UF8 A;  1J31 A;  3ILV A;  5H8L A;  5H8K A;  2VHH A;  4HGD A;  2UXY A;  3IW3 A;  1F89 A;  3SEZ A;  1UF5 A;  3IVZ A;  3SZG A;  3DLA A;  2DYU A; 
#chains in the Genus database with same CATH topology
 4GYN A;  4CYF A;  4IZW A;  4CYG A;  2E2L A;  3HKX A;  4HG5 A;  5JQN A;  2GGL A;  2E11 A;  4HG3 A;  4IZV A;  4IZU A;  3SDB A;  3SEQ A;  4F4H A;  4IZT A;  4KZF A;  1UF7 A;  3N05 A;  3WUY A;  5H8J A;  4CYY A;  4GYL A;  1UF4 A;  2PLQ A;  3KLC A;  3P8K A;  1EMS A;  4IZS A;  5H8I A;  4H5U A;  2GGK A;  2W1V A;  3KI8 A;  1FO6 A;  2DYV A;  3SYT A;  4LF0 A;  2VHI A;  1ERZ A;  5KHA A;  2E2K A;  1UF8 A;  1J31 A;  3ILV A;  5H8L A;  5H8K A;  2VHH A;  4HGD A;  2UXY A;  3IW3 A;  1F89 A;  3SEZ A;  1UF5 A;  3IVZ A;  3SZG A;  3DLA A;  2DYU A; 
#chains in the Genus database with same CATH homology
 4GYN A;  4CYF A;  4IZW A;  4CYG A;  2E2L A;  3HKX A;  4HG5 A;  5JQN A;  2GGL A;  2E11 A;  4HG3 A;  4IZV A;  4IZU A;  3SDB A;  3SEQ A;  4F4H A;  4IZT A;  4KZF A;  1UF7 A;  3N05 A;  3WUY A;  5H8J A;  4CYY A;  4GYL A;  1UF4 A;  2PLQ A;  3KLC A;  3P8K A;  1EMS A;  4IZS A;  5H8I A;  4H5U A;  2GGK A;  2W1V A;  3KI8 A;  1FO6 A;  2DYV A;  3SYT A;  4LF0 A;  2VHI A;  1ERZ A;  5KHA A;  2E2K A;  1UF8 A;  1J31 A;  3ILV A;  5H8L A;  5H8K A;  2VHH A;  4HGD A;  2UXY A;  3IW3 A;  1F89 A;  3SEZ A;  1UF5 A;  3IVZ A;  3SZG A;  3DLA A;  2DYU A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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