1J3AA

Crystal structure of ribosomal protein l13 from pyrococcus horikoshii
Total Genus 44
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
44
sequence length
142
structure length
129
Chain Sequence
MRIINADGLILGRLASRVAKMLLEGEEVVIVNAEKAVITGNREVIFSKYKQRTYPKRSDEIVRRTIRGMLPWKTDRGRKAFRRLKVYVGIPKEFQDKQLETIVEAHVSRLSRPKYVTVGEVAKFLGGKF
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Ribosome
molecule keywords 50S ribosomal protein L13P
publication title Crystal structure of ribosomal protein L13 from hyperthermophilic archaeon Pyrococcus horikoshii
rcsb
source organism Pyrococcus horikoshii
total genus 44
structure length 129
sequence length 142
ec nomenclature
pdb deposition date 2003-01-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00572 Ribosomal_L13 Ribosomal protein L13
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.1180.10 Alpha Beta Alpha-Beta Complex Ribosomal Protein L13p; Chain: A; Ribosomal protein L13 1j3aA00
4IOAG 1YJ9J 1QVGI 3CCSJ 1W2BI 1VQMJ 3CPWI 3CC4J 2ZJRG 3CD6J 3CCUJ 3CF5G 1VQLJ 1QVFI 1VQNJ 3OW2I 3CCRJ 1K9MK 4IOCG 1VQ6J 3DLLG 3CC7J 1VQPJ 3PIOG 1M90K 1KD1K 2ZJPG 1YHQJ 1VQKJ 4V19N 1K73K 3PIPG 1YITJ 3I55J 1Q7YK 3CCMJ 3CCLJ 3CMEJ 1YJNJ 3G71J 1Q86K 3J7YK 3CC2J 1Q81K 1YIJJ 3CXCI 2QEXJ 2ZJQG 2OTLJ 4IO9G 1NJIK 1VQ8J 1VQ9J 2OTJJ 1KC8K 1VQ5J 1VQ4J 1J3AA 3CCQJ 1S72J 3G6EJ 1K8AK 1YJWJ 1N8RK 3I56J 1VQOJ 3G4SJ 3CMAJ 3CCEJ 1VQ7J 1Q82K 1YI2J 1JJ2I 1KQSI 2QA4J 3CCJJ 1M1KK 3CCVJ
chains in the Genus database with same CATH superfamily
4IOAG 1YJ9J 1QVGI 3CCSJ 1W2BI 1VQMJ 3CPWI 3CC4J 2ZJRG 3CD6J 3CCUJ 3CF5G 1VQLJ 1QVFI 1VQNJ 3OW2I 3CCRJ 1K9MK 4IOCG 1VQ6J 3DLLG 3CC7J 1VQPJ 3PIOG 1M90K 1KD1K 2ZJPG 1YHQJ 1VQKJ 4V19N 1K73K 3PIPG 1YITJ 3I55J 1Q7YK 3CCMJ 3CCLJ 3CMEJ 1YJNJ 3G71J 1Q86K 3J7YK 3CC2J 1Q81K 1YIJJ 3CXCI 2QEXJ 2ZJQG 2OTLJ 4IO9G 1NJIK 1VQ8J 1VQ9J 2OTJJ 1KC8K 1VQ5J 1VQ4J 1J3AA 3CCQJ 1S72J 3G6EJ 1K8AK 1YJWJ 1N8RK 3I56J 1VQOJ 3G4SJ 3CMAJ 3CCEJ 1VQ7J 1Q82K 1YI2J 1JJ2I 1KQSI 2QA4J 3CCJJ 1M1KK 3CCVJ
chains in the Genus database with same CATH topology
4IOAG 1YJ9J 1QVGI 3CCSJ 1W2BI 1VQMJ 3CPWI 3CC4J 2ZJRG 3CD6J 3CCUJ 3CF5G 1VQLJ 1QVFI 1VQNJ 3OW2I 3CCRJ 1K9MK 4IOCG 1VQ6J 3DLLG 3CC7J 1VQPJ 3PIOG 1M90K 1KD1K 2ZJPG 1YHQJ 1VQKJ 4V19N 1K73K 3PIPG 1YITJ 3I55J 1Q7YK 3CCMJ 3CCLJ 3CMEJ 1YJNJ 3G71J 1Q86K 3J7YK 3CC2J 1Q81K 1YIJJ 3CXCI 2QEXJ 2ZJQG 2OTLJ 4IO9G 1NJIK 1VQ8J 1VQ9J 2OTJJ 1KC8K 1VQ5J 1VQ4J 1J3AA 3CCQJ 1S72J 3G6EJ 1K8AK 1YJWJ 1N8RK 3I56J 1VQOJ 3G4SJ 3CMAJ 3CCEJ 1VQ7J 1Q82K 1YI2J 1JJ2I 1KQSI 2QA4J 3CCJJ 1M1KK 3CCVJ
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4IOA G;  1YJ9 J;  1QVG I;  3CCS J;  1W2B I;  1VQM J;  3CPW I;  3CC4 J;  2ZJR G;  3CD6 J;  3CCU J;  3CF5 G;  1VQL J;  1QVF I;  1VQN J;  3OW2 I;  3CCR J;  1K9M K;  4IOC G;  1VQ6 J;  3DLL G;  3CC7 J;  1VQP J;  3PIO G;  1M90 K;  1KD1 K;  2ZJP G;  1YHQ J;  1VQK J;  4V19 N;  1K73 K;  3PIP G;  1YIT J;  3I55 J;  1Q7Y K;  3CCM J;  3CCL J;  3CME J;  1YJN J;  3G71 J;  1Q86 K;  3J7Y K;  3CC2 J;  1Q81 K;  1YIJ J;  3CXC I;  2QEX J;  2ZJQ G;  2OTL J;  4IO9 G;  1NJI K;  1VQ8 J;  1VQ9 J;  2OTJ J;  1KC8 K;  1VQ5 J;  1VQ4 J;  1J3A A;  3CCQ J;  1S72 J;  3G6E J;  1K8A K;  1YJW J;  1N8R K;  3I56 J;  1VQO J;  3G4S J;  3CMA J;  3CCE J;  1VQ7 J;  1Q82 K;  1YI2 J;  1JJ2 I;  1KQS I;  2QA4 J;  3CCJ J;  1M1K K;  3CCV J; 
#chains in the Genus database with same CATH topology
 4IOA G;  1YJ9 J;  1QVG I;  3CCS J;  1W2B I;  1VQM J;  3CPW I;  3CC4 J;  2ZJR G;  3CD6 J;  3CCU J;  3CF5 G;  1VQL J;  1QVF I;  1VQN J;  3OW2 I;  3CCR J;  1K9M K;  4IOC G;  1VQ6 J;  3DLL G;  3CC7 J;  1VQP J;  3PIO G;  1M90 K;  1KD1 K;  2ZJP G;  1YHQ J;  1VQK J;  4V19 N;  1K73 K;  3PIP G;  1YIT J;  3I55 J;  1Q7Y K;  3CCM J;  3CCL J;  3CME J;  1YJN J;  3G71 J;  1Q86 K;  3J7Y K;  3CC2 J;  1Q81 K;  1YIJ J;  3CXC I;  2QEX J;  2ZJQ G;  2OTL J;  4IO9 G;  1NJI K;  1VQ8 J;  1VQ9 J;  2OTJ J;  1KC8 K;  1VQ5 J;  1VQ4 J;  1J3A A;  3CCQ J;  1S72 J;  3G6E J;  1K8A K;  1YJW J;  1N8R K;  3I56 J;  1VQO J;  3G4S J;  3CMA J;  3CCE J;  1VQ7 J;  1Q82 K;  1YI2 J;  1JJ2 I;  1KQS I;  2QA4 J;  3CCJ J;  1M1K K;  3CCV J; 
#chains in the Genus database with same CATH homology
 4IOA G;  1YJ9 J;  1QVG I;  3CCS J;  1W2B I;  1VQM J;  3CPW I;  3CC4 J;  2ZJR G;  3CD6 J;  3CCU J;  3CF5 G;  1VQL J;  1QVF I;  1VQN J;  3OW2 I;  3CCR J;  1K9M K;  4IOC G;  1VQ6 J;  3DLL G;  3CC7 J;  1VQP J;  3PIO G;  1M90 K;  1KD1 K;  2ZJP G;  1YHQ J;  1VQK J;  4V19 N;  1K73 K;  3PIP G;  1YIT J;  3I55 J;  1Q7Y K;  3CCM J;  3CCL J;  3CME J;  1YJN J;  3G71 J;  1Q86 K;  3J7Y K;  3CC2 J;  1Q81 K;  1YIJ J;  3CXC I;  2QEX J;  2ZJQ G;  2OTL J;  4IO9 G;  1NJI K;  1VQ8 J;  1VQ9 J;  2OTJ J;  1KC8 K;  1VQ5 J;  1VQ4 J;  1J3A A;  3CCQ J;  1S72 J;  3G6E J;  1K8A K;  1YJW J;  1N8R K;  3I56 J;  1VQO J;  3G4S J;  3CMA J;  3CCE J;  1VQ7 J;  1Q82 K;  1YI2 J;  1JJ2 I;  1KQS I;  2QA4 J;  3CCJ J;  1M1K K;  3CCV J; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...