1J3LA

Structure of the rna-processing inhibitor rraa from thermus thermophilis
Total Genus 43
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
43
sequence length
164
structure length
164
Chain Sequence
MEARTTDLSDLYPEGEALPMVFKSFGGRARFAGRVRTLRVFEDNALVRKVLEEEGAGQVLFVDGGGSLRTALLGGNLARRAWEKGWAGVVVHGAVRDTEELREVPIGLLALAATPKKSAKEGKGEVDVPLKVLGVEVLPGSFLLADEDGLLLLPEPPSGVRSGG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structure of the RNA-processing inhibitor RraA from Thermus thermophilis.
pubmed doi rcsb
source organism Thermus thermophilus
molecule tags Transferase
molecule keywords Demethylmenaquinone Methyltransferase
total genus 43
structure length 164
sequence length 164
chains with identical sequence B, C, D, E, F
ec nomenclature ec 4.1.1.112: Oxaloacetate decarboxylase.
pdb deposition date 2003-02-04

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03737 RraA-like Aldolase/RraA
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.50.30.40 Alpha Beta 3-Layer(bba) Sandwich Glucose Oxidase; domain 1 Ribonuclease E inhibitor RraA/RraA-like 1j3lA00
1Q5XA 2YJVA 1NXJA 1VI4A 2YJTA 3K4IA 3NOJA 3C8OA 2PCNA 1J3LA
chains in the Genus database with same CATH superfamily
4JVOA 4OC4A 1KEEB 2YJTA 3SJEA 2R82A 3EIFA 3TLGB 2PCNA 2JBJA 3TLZA 3EZAA 1KC7A 4X3RA 3KASA 4JZ0A 1NBWA 4CDJA 1C3OB 3NOJA 1VBGA 5F5XA 4CO9A 3D7DA 2GP4A 5JYBA 5K99A 3S9NA 4MI1A 4C9EA 1VI4A 3FECA 2C5QA 4MCPA 4TJVA 3S9MA 4W9YA 3BXMA 5F09A 3KRVA 2PVWA 2EZBA 4P4JA 4JYWA 3K4IA 5FD8A 3T07A 1Y9ZA 3GJZA 3TLAA 3VTAA 4OC5A 3S9LA 4P44A 1CE8B 5F1YA 1Z8LA 2MP0A 2HWGA 4C9VA 4C8FA 4P4DA 4TJXA 5IB9A 1V6CA 2E28A 3G23A 4NGRA 4NGSA 3D7FA 4E94A 4J0NA 1JDEA 4IIYA 2OLSA 2FM4A 3U1BA 3TYXA 4IIXA 2OR4A 4EYSA 2XEIA 3BI1A 4P4FA 3T0TA 1EZBA 1M6VB 1A9XB 3FEDA 4E5SA 1GGOA 3BHXA 1R61A 3EZEA 4OC3A 2D0PA 2C6CA 3SJXA 2X0SA 3IWWA 1CS0B 1XF1A 4NGQA 1T36B 4C86A 4OC1A 2HROA 4P45A 1ZRSA 4COBA 3FEEA 2HI6A 2EK9A 3SR3A 4P4EA 1DIKA 2DIKA 1NXJA 4P4IA 2EK8A 2JBKA 2CIJA 3C8OA 3EZBA 3TLCA 4C8AA 1WVMA 4C9UA 3FF3A 4KNGE 4MCSA 3TLYA 4H1HA 2PVVA 2B0AA 2C6PA 4CZ1A 1C30B 3SJFA 4LQGA 4C84A 1EZAA 4C8UA 3TLBA 3I74A 5F9MA 5D29A 3TLEA 4COGA 4INJA 1JDBC 3SJGA 4P4BA 4C85A 3ICUA 4NGPA 4MCQA 4YN3A 3T5MA 4OMEA 3TLGA 1VBHA 2D0OA 3T05A 4TWEA 4C8TA 4C8PA 4C99A 5IR2A 4C8CA 2YJVA 4C9AA 4MCRA 3BI0A 3IIBA 5JVLA 5ELYA 2EZAA 1CX8A 2XEJA 1Q5XA 1KBLA 2AUNA 2C6GA 2EZCA 3RBUA 3D7HA 4CDKA 4NGNA 1DE4C 4NGTA 2XEGA 1J3LA 1ZYMA 3I6SA 4OC2A 4M8DA 4NGMA 3D7GA 4MJXA 1ZL0A 2OOTA 2XEFA 4OC0A 4C9RA 2AUMA 3K9TA 1BXRB
chains in the Genus database with same CATH topology
1Q5XA 2YJVA 1NXJA 1VI4A 2YJTA 3K4IA 3NOJA 3C8OA 2PCNA 1J3LA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1Q5X A;  2YJV A;  1NXJ A;  1VI4 A;  2YJT A;  3K4I A;  3NOJ A;  3C8O A;  2PCN A;  1J3L A; 
#chains in the Genus database with same CATH topology
 4JVO A;  4OC4 A;  1KEE B;  2YJT A;  3SJE A;  2R82 A;  3EIF A;  3TLG B;  2PCN A;  2JBJ A;  3TLZ A;  3EZA A;  1KC7 A;  4X3R A;  3KAS A;  4JZ0 A;  1NBW A;  4CDJ A;  1C3O B;  3NOJ A;  1VBG A;  5F5X A;  4CO9 A;  3D7D A;  2GP4 A;  5JYB A;  5K99 A;  3S9N A;  4MI1 A;  4C9E A;  1VI4 A;  3FEC A;  2C5Q A;  4MCP A;  4TJV A;  3S9M A;  4W9Y A;  3BXM A;  5F09 A;  3KRV A;  2PVW A;  2EZB A;  4P4J A;  4JYW A;  3K4I A;  5FD8 A;  3T07 A;  1Y9Z A;  3GJZ A;  3TLA A;  3VTA A;  4OC5 A;  3S9L A;  4P44 A;  1CE8 B;  5F1Y A;  1Z8L A;  2MP0 A;  2HWG A;  4C9V A;  4C8F A;  4P4D A;  4TJX A;  5IB9 A;  1V6C A;  2E28 A;  3G23 A;  4NGR A;  4NGS A;  3D7F A;  4E94 A;  4J0N A;  1JDE A;  4IIY A;  2OLS A;  2FM4 A;  3U1B A;  3TYX A;  4IIX A;  2OR4 A;  4EYS A;  2XEI A;  3BI1 A;  4P4F A;  3T0T A;  1EZB A;  1M6V B;  1A9X B;  3FED A;  4E5S A;  1GGO A;  3BHX A;  1R61 A;  3EZE A;  4OC3 A;  2D0P A;  2C6C A;  3SJX A;  2X0S A;  3IWW A;  1CS0 B;  1XF1 A;  4NGQ A;  1T36 B;  4C86 A;  4OC1 A;  2HRO A;  4P45 A;  1ZRS A;  4COB A;  3FEE A;  2HI6 A;  2EK9 A;  3SR3 A;  4P4E A;  1DIK A;  2DIK A;  1NXJ A;  4P4I A;  2EK8 A;  2JBK A;  2CIJ A;  3C8O A;  3EZB A;  3TLC A;  4C8A A;  1WVM A;  4C9U A;  3FF3 A;  4KNG E;  4MCS A;  3TLY A;  4H1H A;  2PVV A;  2B0A A;  2C6P A;  4CZ1 A;  1C30 B;  3SJF A;  4LQG A;  4C84 A;  1EZA A;  4C8U A;  3TLB A;  3I74 A;  5F9M A;  5D29 A;  3TLE A;  4COG A;  4INJ A;  1JDB C;  3SJG A;  4P4B A;  4C85 A;  3ICU A;  4NGP A;  4MCQ A;  4YN3 A;  3T5M A;  4OME A;  3TLG A;  1VBH A;  2D0O A;  3T05 A;  4TWE A;  4C8T A;  4C8P A;  4C99 A;  5IR2 A;  4C8C A;  2YJV A;  4C9A A;  4MCR A;  3BI0 A;  3IIB A;  5JVL A;  5ELY A;  2EZA A;  1CX8 A;  2XEJ A;  1Q5X A;  1KBL A;  2AUN A;  2C6G A;  2EZC A;  3RBU A;  3D7H A;  4CDK A;  4NGN A;  1DE4 C;  4NGT A;  2XEG A;  1J3L A;  1ZYM A;  3I6S A;  4OC2 A;  4M8D A;  4NGM A;  3D7G A;  4MJX A;  1ZL0 A;  2OOT A;  2XEF A;  4OC0 A;  4C9R A;  2AUM A;  3K9T A;  1BXR B; 
#chains in the Genus database with same CATH homology
 1Q5X A;  2YJV A;  1NXJ A;  1VI4 A;  2YJT A;  3K4I A;  3NOJ A;  3C8O A;  2PCN A;  1J3L A; 
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similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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