1J3LA

Structure of the rna-processing inhibitor rraa from thermus thermophilis
Total Genus 43
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
43
sequence length
164
structure length
164
Chain Sequence
MEARTTDLSDLYPEGEALPMVFKSFGGRARFAGRVRTLRVFEDNALVRKVLEEEGAGQVLFVDGGGSLRTALLGGNLARRAWEKGWAGVVVHGAVRDTEELREVPIGLLALAATPKKSAKEGKGEVDVPLKVLGVEVLPGSFLLADEDGLLLLPEPPSGVRSGG
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Transferase
molecule keywords Demethylmenaquinone Methyltransferase
publication title Structure of the RNA-processing inhibitor RraA from Thermus thermophilis.
pubmed doi rcsb
source organism Thermus thermophilus
total genus 43
structure length 164
sequence length 164
chains with identical sequence B, C, D, E, F
ec nomenclature ec 4.1.1.112: Oxaloacetate decarboxylase.
pdb deposition date 2003-02-04

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03737 RraA-like Aldolase/RraA
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.50.30.40 Alpha Beta 3-Layer(bba) Sandwich Glucose Oxidase; domain 1 Ribonuclease E inhibitor RraA/RraA-like 1j3lA00
1VI4A 1J3LA 2PCNA 3C8OA 1Q5XA 3NOJA 1NXJA 2YJTA 2YJVA 3K4IA
chains in the Genus database with same CATH superfamily
3EZEA 3GJZA 1KEEB 4NGSA 1ZRSA 2FM4A 4KNGE 3VTAA 1VBGA 1DIKA 1M6VB 4C85A 2C5QA 3T5MA 2JBJA 4MCPA 4E5SA 3I6SA 2YJTA 4J0NA 4NGRA 4MCQA 2C6GA 3ICUA 3T0TA 3TLBA 2XEGA 1A9XB 2GP4A 3D7HA 1V6CA 2C6PA 2MP0A 4C8FA 1VBHA 3TLYA 2EZBA 1EZBA 3TYXA 1EZAA 2XEIA 3EZAA 4OC4A 4OC3A 4P4DA 1Y9ZA 4NGTA 1NXJA 4OC1A 5D29A 5K99A 3BHXA 3RBUA 4CZ1A 3G23A 3TLZA 1CX8A 4C9EA 2AUNA 1Q5XA 1R61A 4MJXA 3IWWA 5FD8A 2JBKA 2DIKA 4CDJA 1DE4C 4C9VA 1J3LA 2PCNA 4C84A 4E94A 4OC5A 3BXMA 3KASA 4OC0A 5F09A 5JVLA 4C8CA 5ELYA 2YJVA 4CDKA 2AUMA 3D7GA 4W9YA 4C8UA 4C9RA 1KBLA 4NGPA 1C3OB 1NBWA 4P45A 4P4EA 4TJXA 2HROA 4NGNA 4JVOA 5F1YA 1XF1A 1CS0B 3FECA 3U1BA 2R82A 3S9LA 4C99A 3EZBA 4P4IA 4C8AA 2XEFA 2D0PA 3FEEA 2OR4A 3TLGA 4M8DA 4IIXA 4H1HA 3C8OA 2EZCA 2PVWA 3SJGA 3KRVA 1JDBC 3IIBA 3SJEA 1ZYMA 3FEDA 2EK8A 3TLGB 3K9TA 3TLCA 2OOTA 4CO9A 4JYWA 3EIFA 5IR2A 4INJA 5JYBA 1JDEA 3I74A 4IIYA 1BXRB 1VI4A 4NGQA 4C9UA 4C9AA 4COGA 4MCSA 3BI0A 2HWGA 4NGMA 1Z8LA 4P4FA 3D7DA 4JZ0A 3SR3A 1KC7A 1ZL0A 4LQGA 4X3RA 4MI1A 4MCRA 4C86A 3BI1A 4P4BA 5F5XA 1WVMA 3S9NA 2HI6A 3FF3A 2OLSA 4YN3A 2B0AA 2EZAA 4TWEA 1C30B 4TJVA 4P4JA 2EK9A 2X0SA 3SJFA 3NOJA 2C6CA 2D0OA 1GGOA 1T36B 1CE8B 3SJXA 4C8TA 3T07A 2E28A 3T05A 3TLAA 3S9MA 4COBA 4P44A 2PVVA 4EYSA 4OMEA 3TLEA 2XEJA 5IB9A 2CIJA 4C8PA 3K4IA 4OC2A 3D7FA 5F9MA
chains in the Genus database with same CATH topology
1VI4A 1J3LA 2PCNA 3C8OA 1Q5XA 3NOJA 1NXJA 2YJTA 2YJVA 3K4IA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1VI4 A;  1J3L A;  2PCN A;  3C8O A;  1Q5X A;  3NOJ A;  1NXJ A;  2YJT A;  2YJV A;  3K4I A; 
#chains in the Genus database with same CATH topology
 3EZE A;  3GJZ A;  1KEE B;  4NGS A;  1ZRS A;  2FM4 A;  4KNG E;  3VTA A;  1VBG A;  1DIK A;  1M6V B;  4C85 A;  2C5Q A;  3T5M A;  2JBJ A;  4MCP A;  4E5S A;  3I6S A;  2YJT A;  4J0N A;  4NGR A;  4MCQ A;  2C6G A;  3ICU A;  3T0T A;  3TLB A;  2XEG A;  1A9X B;  2GP4 A;  3D7H A;  1V6C A;  2C6P A;  2MP0 A;  4C8F A;  1VBH A;  3TLY A;  2EZB A;  1EZB A;  3TYX A;  1EZA A;  2XEI A;  3EZA A;  4OC4 A;  4OC3 A;  4P4D A;  1Y9Z A;  4NGT A;  1NXJ A;  4OC1 A;  5D29 A;  5K99 A;  3BHX A;  3RBU A;  4CZ1 A;  3G23 A;  3TLZ A;  1CX8 A;  4C9E A;  2AUN A;  1Q5X A;  1R61 A;  4MJX A;  3IWW A;  5FD8 A;  2JBK A;  2DIK A;  4CDJ A;  1DE4 C;  4C9V A;  1J3L A;  2PCN A;  4C84 A;  4E94 A;  4OC5 A;  3BXM A;  3KAS A;  4OC0 A;  5F09 A;  5JVL A;  4C8C A;  5ELY A;  2YJV A;  4CDK A;  2AUM A;  3D7G A;  4W9Y A;  4C8U A;  4C9R A;  1KBL A;  4NGP A;  1C3O B;  1NBW A;  4P45 A;  4P4E A;  4TJX A;  2HRO A;  4NGN A;  4JVO A;  5F1Y A;  1XF1 A;  1CS0 B;  3FEC A;  3U1B A;  2R82 A;  3S9L A;  4C99 A;  3EZB A;  4P4I A;  4C8A A;  2XEF A;  2D0P A;  3FEE A;  2OR4 A;  3TLG A;  4M8D A;  4IIX A;  4H1H A;  3C8O A;  2EZC A;  2PVW A;  3SJG A;  3KRV A;  1JDB C;  3IIB A;  3SJE A;  1ZYM A;  3FED A;  2EK8 A;  3TLG B;  3K9T A;  3TLC A;  2OOT A;  4CO9 A;  4JYW A;  3EIF A;  5IR2 A;  4INJ A;  5JYB A;  1JDE A;  3I74 A;  4IIY A;  1BXR B;  1VI4 A;  4NGQ A;  4C9U A;  4C9A A;  4COG A;  4MCS A;  3BI0 A;  2HWG A;  4NGM A;  1Z8L A;  4P4F A;  3D7D A;  4JZ0 A;  3SR3 A;  1KC7 A;  1ZL0 A;  4LQG A;  4X3R A;  4MI1 A;  4MCR A;  4C86 A;  3BI1 A;  4P4B A;  5F5X A;  1WVM A;  3S9N A;  2HI6 A;  3FF3 A;  2OLS A;  4YN3 A;  2B0A A;  2EZA A;  4TWE A;  1C30 B;  4TJV A;  4P4J A;  2EK9 A;  2X0S A;  3SJF A;  3NOJ A;  2C6C A;  2D0O A;  1GGO A;  1T36 B;  1CE8 B;  3SJX A;  4C8T A;  3T07 A;  2E28 A;  3T05 A;  3TLA A;  3S9M A;  4COB A;  4P44 A;  2PVV A;  4EYS A;  4OME A;  3TLE A;  2XEJ A;  5IB9 A;  2CIJ A;  4C8P A;  3K4I A;  4OC2 A;  3D7F A;  5F9M A; 
#chains in the Genus database with same CATH homology
 1VI4 A;  1J3L A;  2PCN A;  3C8O A;  1Q5X A;  3NOJ A;  1NXJ A;  2YJT A;  2YJV A;  3K4I A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...