1J3LA

Structure of the rna-processing inhibitor rraa from thermus thermophilis
Total Genus 43
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
43
sequence length
164
structure length
164
Chain Sequence
MEARTTDLSDLYPEGEALPMVFKSFGGRARFAGRVRTLRVFEDNALVRKVLEEEGAGQVLFVDGGGSLRTALLGGNLARRAWEKGWAGVVVHGAVRDTEELREVPIGLLALAATPKKSAKEGKGEVDVPLKVLGVEVLPGSFLLADEDGLLLLPEPPSGVRSGG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Demethylmenaquinone Methyltransferase
publication title Structure of the RNA-processing inhibitor RraA from Thermus thermophilis.
pubmed doi rcsb
source organism Thermus thermophilus
molecule tags Transferase
total genus 43
structure length 164
sequence length 164
chains with identical sequence B, C, D, E, F
ec nomenclature ec 4.1.1.112: Oxaloacetate decarboxylase.
pdb deposition date 2003-02-04

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03737 RraA-like Aldolase/RraA
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.50.30.40 Alpha Beta 3-Layer(bba) Sandwich Glucose Oxidase; domain 1 Ribonuclease E inhibitor RraA/RraA-like 1j3lA00
3NOJA 2YJVA 1J3LA 2YJTA 3C8OA 2PCNA 1NXJA 1VI4A 1Q5XA 3K4IA
chains in the Genus database with same CATH superfamily
3GJZA 4OC0A 4IIXA 4NGPA 3SJGA 1ZRSA 1GGOA 3TLBA 1DIKA 1KEEB 4CO9A 4W9YA 1WVMA 2AUNA 2AUMA 3SR3A 2OLSA 4P45A 2EZBA 2MP0A 2X0SA 2XEGA 3BHXA 2B0AA 4C8FA 3K4IA 5IB9A 3SJXA 2C6PA 3TLYA 4C8CA 3EZEA 1T36B 5ELYA 3EIFA 3S9NA 4JZ0A 4MCSA 1CS0B 3FEEA 4NGSA 3S9MA 5F5XA 4CZ1A 3FECA 2DIKA 4P4BA 5JVLA 4C8PA 3NOJA 4P4FA 4NGRA 4C85A 4TJXA 1ZYMA 2XEIA 4C9RA 3TLAA 1C3OB 4P4IA 4H1HA 2CIJA 3T0TA 1JDBC 1EZBA 4COGA 4E5SA 3TYXA 2OR4A 1BXRB 4MCQA 2EZAA 3S9LA 3D7DA 4INJA 1XF1A 4P4EA 3C8OA 2PCNA 4C8TA 2HWGA 3EZAA 3G23A 4NGMA 3TLCA 1KBLA 4OC1A 2C6CA 1J3LA 2HI6A 4C8AA 1V6CA 1VI4A 3EZBA 2JBKA 4NGNA 2PVVA 2D0OA 2FM4A 2OOTA 3T5MA 2YJVA 4P44A 4YN3A 5F9MA 5F09A 4EYSA 3I6SA 3BI1A 4JYWA 3KASA 4C9EA 1EZAA 3ICUA 1A9XB 5D29A 4CDKA 1JDEA 3TLEA 1VBGA 4OC2A 4C9AA 1R61A 4P4DA 1ZL0A 1M6VB 4C86A 5K99A 1NBWA 1DE4C 2EK9A 4OC4A 3IIBA 4TWEA 1C30B 4NGTA 3TLZA 3TLGB 4E94A 4KNGE 4COBA 2GP4A 5JYBA 4C9UA 2EK8A 2E28A 3BI0A 2HROA 3I74A 5IR2A 4C9VA 2XEFA 2YJTA 4JVOA 3K9TA 5FD8A 1NXJA 2XEJA 1KC7A 1VBHA 3FEDA 3BXMA 4MCPA 4C84A 3VTAA 4M8DA 1Y9ZA 2EZCA 4J0NA 2PVWA 4TJVA 4X3RA 3T05A 3RBUA 4C99A 3SJFA 2D0PA 4LQGA 1CE8B 3D7GA 4OC5A 5F1YA 2C6GA 2JBJA 3D7FA 3SJEA 2C5QA 4C8UA 4CDJA 4NGQA 3KRVA 4MI1A 1Q5XA 4MJXA 1CX8A 4OMEA 3FF3A 4IIYA 3U1BA 3TLGA 3D7HA 1Z8LA 4OC3A 2R82A 4P4JA 3IWWA 4MCRA 3T07A
chains in the Genus database with same CATH topology
3NOJA 2YJVA 1J3LA 2YJTA 3C8OA 2PCNA 1NXJA 1VI4A 1Q5XA 3K4IA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3NOJ A;  2YJV A;  1J3L A;  2YJT A;  3C8O A;  2PCN A;  1NXJ A;  1VI4 A;  1Q5X A;  3K4I A; 
#chains in the Genus database with same CATH topology
 3GJZ A;  4OC0 A;  4IIX A;  4NGP A;  3SJG A;  1ZRS A;  1GGO A;  3TLB A;  1DIK A;  1KEE B;  4CO9 A;  4W9Y A;  1WVM A;  2AUN A;  2AUM A;  3SR3 A;  2OLS A;  4P45 A;  2EZB A;  2MP0 A;  2X0S A;  2XEG A;  3BHX A;  2B0A A;  4C8F A;  3K4I A;  5IB9 A;  3SJX A;  2C6P A;  3TLY A;  4C8C A;  3EZE A;  1T36 B;  5ELY A;  3EIF A;  3S9N A;  4JZ0 A;  4MCS A;  1CS0 B;  3FEE A;  4NGS A;  3S9M A;  5F5X A;  4CZ1 A;  3FEC A;  2DIK A;  4P4B A;  5JVL A;  4C8P A;  3NOJ A;  4P4F A;  4NGR A;  4C85 A;  4TJX A;  1ZYM A;  2XEI A;  4C9R A;  3TLA A;  1C3O B;  4P4I A;  4H1H A;  2CIJ A;  3T0T A;  1JDB C;  1EZB A;  4COG A;  4E5S A;  3TYX A;  2OR4 A;  1BXR B;  4MCQ A;  2EZA A;  3S9L A;  3D7D A;  4INJ A;  1XF1 A;  4P4E A;  3C8O A;  2PCN A;  4C8T A;  2HWG A;  3EZA A;  3G23 A;  4NGM A;  3TLC A;  1KBL A;  4OC1 A;  2C6C A;  1J3L A;  2HI6 A;  4C8A A;  1V6C A;  1VI4 A;  3EZB A;  2JBK A;  4NGN A;  2PVV A;  2D0O A;  2FM4 A;  2OOT A;  3T5M A;  2YJV A;  4P44 A;  4YN3 A;  5F9M A;  5F09 A;  4EYS A;  3I6S A;  3BI1 A;  4JYW A;  3KAS A;  4C9E A;  1EZA A;  3ICU A;  1A9X B;  5D29 A;  4CDK A;  1JDE A;  3TLE A;  1VBG A;  4OC2 A;  4C9A A;  1R61 A;  4P4D A;  1ZL0 A;  1M6V B;  4C86 A;  5K99 A;  1NBW A;  1DE4 C;  2EK9 A;  4OC4 A;  3IIB A;  4TWE A;  1C30 B;  4NGT A;  3TLZ A;  3TLG B;  4E94 A;  4KNG E;  4COB A;  2GP4 A;  5JYB A;  4C9U A;  2EK8 A;  2E28 A;  3BI0 A;  2HRO A;  3I74 A;  5IR2 A;  4C9V A;  2XEF A;  2YJT A;  4JVO A;  3K9T A;  5FD8 A;  1NXJ A;  2XEJ A;  1KC7 A;  1VBH A;  3FED A;  3BXM A;  4MCP A;  4C84 A;  3VTA A;  4M8D A;  1Y9Z A;  2EZC A;  4J0N A;  2PVW A;  4TJV A;  4X3R A;  3T05 A;  3RBU A;  4C99 A;  3SJF A;  2D0P A;  4LQG A;  1CE8 B;  3D7G A;  4OC5 A;  5F1Y A;  2C6G A;  2JBJ A;  3D7F A;  3SJE A;  2C5Q A;  4C8U A;  4CDJ A;  4NGQ A;  3KRV A;  4MI1 A;  1Q5X A;  4MJX A;  1CX8 A;  4OME A;  3FF3 A;  4IIY A;  3U1B A;  3TLG A;  3D7H A;  1Z8L A;  4OC3 A;  2R82 A;  4P4J A;  3IWW A;  4MCR A;  3T07 A; 
#chains in the Genus database with same CATH homology
 3NOJ A;  2YJV A;  1J3L A;  2YJT A;  3C8O A;  2PCN A;  1NXJ A;  1VI4 A;  1Q5X A;  3K4I A; 
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similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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