1J3LA

Structure of the rna-processing inhibitor rraa from thermus thermophilis
Total Genus 43
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
43
sequence length
164
structure length
164
Chain Sequence
b'MEARTTDLSDLYPEGEALPMVFKSFGGRARFAGRVRTLRVFEDNALVRKVLEEEGAGQVLFVDGGGSLRTALLGGNLARRAWEKGWAGVVVHGAVRDTEELREVPIGLLALAATPKKSAKEGKGEVDVPLKVLGVEVLPGSFLLADEDGLLLLPEPPSGVRSGG'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Demethylmenaquinone Methyltransferase
publication title Structure of the RNA-processing inhibitor RraA from Thermus thermophilis.
pubmed doi rcsb
source organism Thermus thermophilus
molecule tags Transferase
total genus 43
structure length 164
sequence length 164
chains with identical sequence B, C, D, E, F
ec nomenclature ec 4.1.1.112: Oxaloacetate decarboxylase.
pdb deposition date 2003-02-04

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03737 RraA-like Aldolase/RraA
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.50.30.40 Alpha Beta 3-Layer(bba) Sandwich Glucose Oxidase; domain 1 Ribonuclease E inhibitor RraA/RraA-like 1j3lA00
2PCNA 1Q5XA 2YJTA 1VI4A 1J3LA 1NXJA 3C8OA 2YJVA 3K4IA 3NOJA
chains in the Genus database with same CATH superfamily
4NGRA 4MCSA 5K99A 1GGOA 4OMEA 4C9AA 3S9NA 4COGA 1NBWA 1T36B 4C84A 5FD8A 3SJGA 3D7DA 1CS0B 1Y9ZA 4TJVA 3TLYA 1BXRB 4OC5A 4E94A 3K4IA 1DE4C 4P4DA 4TWEA 5D29A 4C8CA 4C8AA 1JDBC 1V6CA 4CO9A 2OLSA 4MCPA 3D7FA 4C86A 2HWGA 5F1YA 2YJTA 3BHXA 1CE8B 3FECA 4C9RA 5IB9A 3FEEA 4C85A 2C6CA 2XEIA 3TLEA 4NGPA 4NGMA 4MCRA 2PVVA 4CDKA 3I74A 2EZBA 3BI1A 4JVOA 4OC2A 4C8PA 1CX8A 3T0TA 3GJZA 2EZAA 4INJA 4P4FA 3TLCA 3FEDA 2X0SA 3T05A 1M6VB 4P4JA 3TYXA 3K9TA 2HROA 5JYBA 4MJXA 4OC4A 3TLGA 3NOJA 3T5MA 2OR4A 4P4BA 3T07A 3S9LA 4P45A 3RBUA 1Q5XA 5F5XA 5F9MA 2OOTA 4CDJA 1DIKA 2AUNA 3D7HA 1ZL0A 4H1HA 3KASA 1XF1A 4NGSA 4IIXA 4OC3A 3IWWA 4X3RA 4CZ1A 1KEEB 4KNGE 2DIKA 2B0AA 2D0PA 3TLAA 5F09A 2PVWA 4M8DA 3S9MA 2R82A 2PCNA 4JZ0A 2E28A 1C30B 3EZBA 2FM4A 5JVLA 4MI1A 4C9VA 3KRVA 2EZCA 4W9YA 2EK8A 5ELYA 1JDEA 1C3OB 1A9XB 2AUMA 1VI4A 1NXJA 2EK9A 1VBHA 3EZEA 4OC0A 1Z8LA 2JBJA 2D0OA 3D7GA 1EZAA 4J0NA 3FF3A 1VBGA 4MCQA 2XEJA 3ICUA 1ZYMA 2GP4A 4OC1A 4C99A 4NGTA 4TJXA 4YN3A 2CIJA 3EIFA 4C8UA 3TLBA 3C8OA 2XEFA 1WVMA 3SJFA 4IIYA 3G23A 4EYSA 1KBLA 2C5QA 1EZBA 2JBKA 5IR2A 4P44A 3TLZA 4C8TA 3TLGB 2C6GA 4E5SA 3EZAA 4COBA 4C9EA 4C8FA 4P4IA 1KC7A 2HI6A 1ZRSA 4JYWA 3BI0A 3BXMA 4P4EA 3SJXA 3IIBA 4LQGA 2XEGA 4C9UA 3VTAA 3I6SA 3U1BA 4NGQA 2C6PA 3SJEA 4NGNA 1J3LA 3SR3A 1R61A 2YJVA 2MP0A
chains in the Genus database with same CATH topology
2PCNA 1Q5XA 2YJTA 1VI4A 1J3LA 1NXJA 3C8OA 2YJVA 3K4IA 3NOJA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2PCN A;  1Q5X A;  2YJT A;  1VI4 A;  1J3L A;  1NXJ A;  3C8O A;  2YJV A;  3K4I A;  3NOJ A; 
#chains in the Genus database with same CATH topology
 4NGR A;  4MCS A;  5K99 A;  1GGO A;  4OME A;  4C9A A;  3S9N A;  4COG A;  1NBW A;  1T36 B;  4C84 A;  5FD8 A;  3SJG A;  3D7D A;  1CS0 B;  1Y9Z A;  4TJV A;  3TLY A;  1BXR B;  4OC5 A;  4E94 A;  3K4I A;  1DE4 C;  4P4D A;  4TWE A;  5D29 A;  4C8C A;  4C8A A;  1JDB C;  1V6C A;  4CO9 A;  2OLS A;  4MCP A;  3D7F A;  4C86 A;  2HWG A;  5F1Y A;  2YJT A;  3BHX A;  1CE8 B;  3FEC A;  4C9R A;  5IB9 A;  3FEE A;  4C85 A;  2C6C A;  2XEI A;  3TLE A;  4NGP A;  4NGM A;  4MCR A;  2PVV A;  4CDK A;  3I74 A;  2EZB A;  3BI1 A;  4JVO A;  4OC2 A;  4C8P A;  1CX8 A;  3T0T A;  3GJZ A;  2EZA A;  4INJ A;  4P4F A;  3TLC A;  3FED A;  2X0S A;  3T05 A;  1M6V B;  4P4J A;  3TYX A;  3K9T A;  2HRO A;  5JYB A;  4MJX A;  4OC4 A;  3TLG A;  3NOJ A;  3T5M A;  2OR4 A;  4P4B A;  3T07 A;  3S9L A;  4P45 A;  3RBU A;  1Q5X A;  5F5X A;  5F9M A;  2OOT A;  4CDJ A;  1DIK A;  2AUN A;  3D7H A;  1ZL0 A;  4H1H A;  3KAS A;  1XF1 A;  4NGS A;  4IIX A;  4OC3 A;  3IWW A;  4X3R A;  4CZ1 A;  1KEE B;  4KNG E;  2DIK A;  2B0A A;  2D0P A;  3TLA A;  5F09 A;  2PVW A;  4M8D A;  3S9M A;  2R82 A;  2PCN A;  4JZ0 A;  2E28 A;  1C30 B;  3EZB A;  2FM4 A;  5JVL A;  4MI1 A;  4C9V A;  3KRV A;  2EZC A;  4W9Y A;  2EK8 A;  5ELY A;  1JDE A;  1C3O B;  1A9X B;  2AUM A;  1VI4 A;  1NXJ A;  2EK9 A;  1VBH A;  3EZE A;  4OC0 A;  1Z8L A;  2JBJ A;  2D0O A;  3D7G A;  1EZA A;  4J0N A;  3FF3 A;  1VBG A;  4MCQ A;  2XEJ A;  3ICU A;  1ZYM A;  2GP4 A;  4OC1 A;  4C99 A;  4NGT A;  4TJX A;  4YN3 A;  2CIJ A;  3EIF A;  4C8U A;  3TLB A;  3C8O A;  2XEF A;  1WVM A;  3SJF A;  4IIY A;  3G23 A;  4EYS A;  1KBL A;  2C5Q A;  1EZB A;  2JBK A;  5IR2 A;  4P44 A;  3TLZ A;  4C8T A;  3TLG B;  2C6G A;  4E5S A;  3EZA A;  4COB A;  4C9E A;  4C8F A;  4P4I A;  1KC7 A;  2HI6 A;  1ZRS A;  4JYW A;  3BI0 A;  3BXM A;  4P4E A;  3SJX A;  3IIB A;  4LQG A;  2XEG A;  4C9U A;  3VTA A;  3I6S A;  3U1B A;  4NGQ A;  2C6P A;  3SJE A;  4NGN A;  1J3L A;  3SR3 A;  1R61 A;  2YJV A;  2MP0 A; 
#chains in the Genus database with same CATH homology
 2PCN A;  1Q5X A;  2YJT A;  1VI4 A;  1J3L A;  1NXJ A;  3C8O A;  2YJV A;  3K4I A;  3NOJ A; 
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