1J4WA

Complex of the kh3 and kh4 domains of fbp with a single_stranded 29mer dna oligonucleotide from the fuse element of the c-myc oncogene
Total Genus 38
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
38
sequence length
174
structure length
145
Chain Sequence
b'GSHMIDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPERIAQITGPPDRAQHAAEIITDLLRSVQQEFNFIVPTGKTGLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRGTPQQIDYARQLIEEKI'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structure and dynamics of KH domains from FBP bound to single-stranded DNA.
pubmed doi rcsb
molecule keywords DNA (5'-D(*GP*TP*A*TP*AP*TP*TP*CP*CP*CP*TP*CP*GP*GP*G*AP*TP*
source organism Homo sapiens
molecule tags Transcription/dna
total genus 38
structure length 145
sequence length 174
ec nomenclature
pdb deposition date 2001-11-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00013 KH_1 KH domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1370.10 Alpha Beta 2-Layer Sandwich Ribosomal Protein S8; Chain: A, domain 1 K Homology domain, type 1 1j4wA01
3.30.1370.10 Alpha Beta 2-Layer Sandwich Ribosomal Protein S8; Chain: A, domain 1 K Homology domain, type 1 1j4wA02
4JVHA 1ZZJA 2JEAI 3VKEA 2JZXA 4AIMA 2Z0SA 2JE6I 5JEAG 2CTKA 5K36G 1K1GA 4IFDG 4LIJA 2PQUA 2ANNA 1WE8A 1J4WA 2CTLA 2HH2A 4BA1I 4QMFB 2MJHA 5C0XG 2JVZA 2FMRA 2JA9A 4B8TA 2CTJA 2CPQA 1VIGA 1VIHA 2YQRA 4WALA 1DTJA 1KHMA 1WVNA 3U1KA 2BA0A 1ZTGA 1ZZKA 1J5KA 3L7ZC 2P2RA 2AXYA 2DGRA 2BL5A 4OO1G 4BA2I 4JVYA 2ANRA 1DT4A 2CTFA 3V69A 2OPVA 1EC6A 1TUAA 2OPUA 1X4MA 2HH3A 2CTEA 2NN6G 4WANA 4NBQA 1X4NA 1ZZIA 2E3UA 3AEVB 4AM3A 2PY9A 2QNDA 2CTMA 2JEBI
chains in the Genus database with same CATH superfamily
1MSZA 4DV5H 4JI0H 4DUZH 2Z0SA 3UOEA 4B3TH 4B3RH 4YY3H 4LIJA 4X64H 2PQUA 4NXNH 4QMFB 3RF2A 1FKAH 5LL6b 5C0XG 3SB1A 2JVZA 1Z2IA 4H8AA 2HHHH 2UXDH 2JA9A 2LTLA 1N33H 1XMQH 2O4CA 4B8TA 2UU9H 1I94H 2YQRA 4B3MH 1WTJA 4YHHH 5BR8H 1ZZKA 1J5KA 4DR6H 2DGRA 2M8WA 3I0PA 3GABA 2BL5A 4X65H 4GKJH 4BA2I 4JVYA 2ANRA 3KDKA 2OPUA 1S20A 4NBQA 1X4NA 4DR3H 4DV2H 2PT7G 4NZRM 2PY9A 4OD6A 3JAMW 4JVHA 4JI2H 4X62H 2JEAI 2CWHA 1PQXA 4LF4H 2JZXA 5K36G 2JE6I 3GR5A 2CTKA 2VQFH 4DV4H 2ZM6H 1NXUA 1XNRH 4JV5H 4DR7H 4JI5H 1J4WA 4OCHA 4DR2H 1WHRA 4BA1I 1XRHA 2FMRA 4X66H 3OETA 4KHPH 2CPQA 1VIGA 1VIHA 1I6UA 4DR1H 2UXCH 2UUCH 2UUBH 3NCVA 1HNZH 1SEIA 2P2RA 2LF0A 1HNXH 2A1SA 3QD7X 1IBMH 1DT4A 2CTFA 1EC6A 3OSSD 4FJUA 3KDGA 1IBLH 2D9IA 3J80W 3OTOH 4LFCH 4WANA 1F0XA 3GKUA 4LF9H 4K0KH 4AM3A 2UXBH 4DV6H 1N34H 2FFMA 4G08A 2VKCA 3VKEA 4JYAH 5JEAG 4NZTM 4PDBA 4JI6H 4LF6H 1XMOH 2CPMA 2ANNA 2LRRA 2FPHX 5IT9W 4NXMH 5LMUH 2E5LH 2MJHA 4B8CD 1VBIA 2CTJA 1FJGH 2X06A 4LFAH 4WALA 1DTJA 1WVNA 3U1KA 4JI8H 1UG8A 4FJSA 2AXYA 4DR4H 1XNQH 2ZQEA 2G8YA 3V69A 4JI7H 1X4MA 3T1HH 1N36H 1ODHA 4E9JA 3FAUA 4JI4H 2VQEH 3AEVB 4LF8H 2K1HA 2QNDA 4EC5A 4DUYH 1J5EH 4DV1H 1V8CA 1X9ZA 1ZZJA 4AQYH 4AIMA 4OX9H 1K1GA 4IFDG 1N32H 4DV0H 1WE8A 2CTLA 1IBKH 2HH2A 5A2QW 5DT9A 4LF7H 1AN7A 1HNWH 2LTMA 4B3SH 1V9NA 2M6QA 4DV3H 3T1YH 2Y3MA 5IWAH 3J81W 1KHMA 1ZTGA 2BA0A 3L7ZC 4DV7H 1X0AA 2UUAH 4GKKH 5FLXW 4OO1G 2CWFA 1HR0H 2F4VH 2OPVA 3J7AK 1TUAA 4JI1H 2HH3A 2CTEA 2NN6G 1S03G 4DR5H 1ZZIA 2E3UA 4LF5H 4JI3H 3EZJA 4LFBH 2CTMA 2JEBI 5LMNH
chains in the Genus database with same CATH topology
4JVHA 1ZZJA 2JEAI 3VKEA 2JZXA 4AIMA 2Z0SA 2JE6I 5JEAG 2CTKA 5K36G 1K1GA 4IFDG 4LIJA 2PQUA 2ANNA 1WE8A 1J4WA 2CTLA 2HH2A 4BA1I 4QMFB 2MJHA 5C0XG 2JVZA 2FMRA 2JA9A 4B8TA 2CTJA 2CPQA 1VIGA 1VIHA 2YQRA 4WALA 1DTJA 1KHMA 1WVNA 3U1KA 2BA0A 1ZTGA 1ZZKA 1J5KA 3L7ZC 2P2RA 2AXYA 2DGRA 2BL5A 4OO1G 4BA2I 4JVYA 2ANRA 1DT4A 2CTFA 3V69A 2OPVA 1EC6A 1TUAA 2OPUA 1X4MA 2HH3A 2CTEA 2NN6G 4WANA 4NBQA 1X4NA 1ZZIA 2E3UA 3AEVB 4AM3A 2PY9A 2QNDA 2CTMA 2JEBI
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4JVH A;  1ZZJ A;  2JEA I;  3VKE A;  2JZX A;  4AIM A;  2Z0S A;  2JE6 I;  5JEA G;  2CTK A;  5K36 G;  1K1G A;  4IFD G;  4LIJ A;  2PQU A;  2ANN A;  1WE8 A;  1J4W A;  2CTL A;  2HH2 A;  4BA1 I;  4QMF B;  2MJH A;  5C0X G;  2JVZ A;  2FMR A;  2JA9 A;  4B8T A;  2CTJ A;  2CPQ A;  1VIG A;  1VIH A;  2YQR A;  4WAL A;  1DTJ A;  1KHM A;  1WVN A;  3U1K A;  2BA0 A;  1ZTG A;  1ZZK A;  1J5K A;  3L7Z C;  2P2R A;  2AXY A;  2DGR A;  2BL5 A;  4OO1 G;  4BA2 I;  4JVY A;  2ANR A;  1DT4 A;  2CTF A;  3V69 A;  2OPV A;  1EC6 A;  1TUA A;  2OPU A;  1X4M A;  2HH3 A;  2CTE A;  2NN6 G;  4WAN A;  4NBQ A;  1X4N A;  1ZZI A;  2E3U A;  3AEV B;  4AM3 A;  2PY9 A;  2QND A;  2CTM A;  2JEB I; 
#chains in the Genus database with same CATH topology
 1MSZ A;  4DV5 H;  4JI0 H;  4DUZ H;  2Z0S A;  3UOE A;  4B3T H;  4B3R H;  4YY3 H;  4LIJ A;  4X64 H;  2PQU A;  4NXN H;  4QMF B;  3RF2 A;  1FKA H;  5LL6 b;  5C0X G;  3SB1 A;  2JVZ A;  1Z2I A;  4H8A A;  2HHH H;  2UXD H;  2JA9 A;  2LTL A;  1N33 H;  1XMQ H;  2O4C A;  4B8T A;  2UU9 H;  1I94 H;  2YQR A;  4B3M H;  1WTJ A;  4YHH H;  5BR8 H;  1ZZK A;  1J5K A;  4DR6 H;  2DGR A;  2M8W A;  3I0P A;  3GAB A;  2BL5 A;  4X65 H;  4GKJ H;  4BA2 I;  4JVY A;  2ANR A;  3KDK A;  2OPU A;  1S20 A;  4NBQ A;  1X4N A;  4DR3 H;  4DV2 H;  2PT7 G;  4NZR M;  2PY9 A;  4OD6 A;  3JAM W;  4JVH A;  4JI2 H;  4X62 H;  2JEA I;  2CWH A;  1PQX A;  4LF4 H;  2JZX A;  5K36 G;  2JE6 I;  3GR5 A;  2CTK A;  2VQF H;  4DV4 H;  2ZM6 H;  1NXU A;  1XNR H;  4JV5 H;  4DR7 H;  4JI5 H;  1J4W A;  4OCH A;  4DR2 H;  1WHR A;  4BA1 I;  1XRH A;  2FMR A;  4X66 H;  3OET A;  4KHP H;  2CPQ A;  1VIG A;  1VIH A;  1I6U A;  4DR1 H;  2UXC H;  2UUC H;  2UUB H;  3NCV A;  1HNZ H;  1SEI A;  2P2R A;  2LF0 A;  1HNX H;  2A1S A;  3QD7 X;  1IBM H;  1DT4 A;  2CTF A;  1EC6 A;  3OSS D;  4FJU A;  3KDG A;  1IBL H;  2D9I A;  3J80 W;  3OTO H;  4LFC H;  4WAN A;  1F0X A;  3GKU A;  4LF9 H;  4K0K H;  4AM3 A;  2UXB H;  4DV6 H;  1N34 H;  2FFM A;  4G08 A;  2VKC A;  3VKE A;  4JYA H;  5JEA G;  4NZT M;  4PDB A;  4JI6 H;  4LF6 H;  1XMO H;  2CPM A;  2ANN A;  2LRR A;  2FPH X;  5IT9 W;  4NXM H;  5LMU H;  2E5L H;  2MJH A;  4B8C D;  1VBI A;  2CTJ A;  1FJG H;  2X06 A;  4LFA H;  4WAL A;  1DTJ A;  1WVN A;  3U1K A;  4JI8 H;  1UG8 A;  4FJS A;  2AXY A;  4DR4 H;  1XNQ H;  2ZQE A;  2G8Y A;  3V69 A;  4JI7 H;  1X4M A;  3T1H H;  1N36 H;  1ODH A;  4E9J A;  3FAU A;  4JI4 H;  2VQE H;  3AEV B;  4LF8 H;  2K1H A;  2QND A;  4EC5 A;  4DUY H;  1J5E H;  4DV1 H;  1V8C A;  1X9Z A;  1ZZJ A;  4AQY H;  4AIM A;  4OX9 H;  1K1G A;  4IFD G;  1N32 H;  4DV0 H;  1WE8 A;  2CTL A;  1IBK H;  2HH2 A;  5A2Q W;  5DT9 A;  4LF7 H;  1AN7 A;  1HNW H;  2LTM A;  4B3S H;  1V9N A;  2M6Q A;  4DV3 H;  3T1Y H;  2Y3M A;  5IWA H;  3J81 W;  1KHM A;  1ZTG A;  2BA0 A;  3L7Z C;  4DV7 H;  1X0A A;  2UUA H;  4GKK H;  5FLX W;  4OO1 G;  2CWF A;  1HR0 H;  2F4V H;  2OPV A;  3J7A K;  1TUA A;  4JI1 H;  2HH3 A;  2CTE A;  2NN6 G;  1S03 G;  4DR5 H;  1ZZI A;  2E3U A;  4LF5 H;  4JI3 H;  3EZJ A;  4LFB H;  2CTM A;  2JEB I;  5LMN H; 
#chains in the Genus database with same CATH homology
 4JVH A;  1ZZJ A;  2JEA I;  3VKE A;  2JZX A;  4AIM A;  2Z0S A;  2JE6 I;  5JEA G;  2CTK A;  5K36 G;  1K1G A;  4IFD G;  4LIJ A;  2PQU A;  2ANN A;  1WE8 A;  1J4W A;  2CTL A;  2HH2 A;  4BA1 I;  4QMF B;  2MJH A;  5C0X G;  2JVZ A;  2FMR A;  2JA9 A;  4B8T A;  2CTJ A;  2CPQ A;  1VIG A;  1VIH A;  2YQR A;  4WAL A;  1DTJ A;  1KHM A;  1WVN A;  3U1K A;  2BA0 A;  1ZTG A;  1ZZK A;  1J5K A;  3L7Z C;  2P2R A;  2AXY A;  2DGR A;  2BL5 A;  4OO1 G;  4BA2 I;  4JVY A;  2ANR A;  1DT4 A;  2CTF A;  3V69 A;  2OPV A;  1EC6 A;  1TUA A;  2OPU A;  1X4M A;  2HH3 A;  2CTE A;  2NN6 G;  4WAN A;  4NBQ A;  1X4N A;  1ZZI A;  2E3U A;  3AEV B;  4AM3 A;  2PY9 A;  2QND A;  2CTM A;  2JEB I; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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