1J4WA

Complex of the kh3 and kh4 domains of fbp with a single_stranded 29mer dna oligonucleotide from the fuse element of the c-myc oncogene
Total Genus 38
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
38
sequence length
174
structure length
145
Chain Sequence
GSHMIDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPERIAQITGPPDRAQHAAEIITDLLRSVQQEFNFIVPTGKTGLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRGTPQQIDYARQLIEEKI
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Transcription/dna
source organism Homo sapiens
publication title Structure and dynamics of KH domains from FBP bound to single-stranded DNA.
pubmed doi rcsb
molecule keywords DNA (5'-D(*GP*TP*A*TP*AP*TP*TP*CP*CP*CP*TP*CP*GP*GP*G*AP*TP*
total genus 38
structure length 145
sequence length 174
ec nomenclature
pdb deposition date 2001-11-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00013 KH_1 KH domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1370.10 Alpha Beta 2-Layer Sandwich Ribosomal Protein S8; Chain: A, domain 1 K Homology domain, type 1 1j4wA01
3.30.1370.10 Alpha Beta 2-Layer Sandwich Ribosomal Protein S8; Chain: A, domain 1 K Homology domain, type 1 1j4wA02
4BA1I 2JVZA 1K1GA 2CTMA 4B8TA 2CTKA 3U1KA 4JVYA 1VIGA 2HH2A 2JA9A 2Z0SA 2MJHA 4WANA 1KHMA 2OPVA 4OO1G 2YQRA 4IFDG 1WE8A 2PY9A 4WALA 4BA2I 2CTLA 2QNDA 2BA0A 2CPQA 2CTEA 3V69A 2ANRA 4LIJA 1X4NA 1TUAA 4NBQA 2P2RA 4QMFB 5K36G 2DGRA 1X4MA 1J4WA 3L7ZC 1ZZKA 2BL5A 2JEBI 1WVNA 2E3UA 4AM3A 2PQUA 2FMRA 2JE6I 1J5KA 2HH3A 2JZXA 2ANNA 2JEAI 1ZZJA 2AXYA 3VKEA 5JEAG 1DT4A 1ZZIA 2CTJA 1ZTGA 2NN6G 4JVHA 3AEVB 2OPUA 1DTJA 2CTFA 1EC6A 5C0XG 1VIHA 4AIMA
chains in the Genus database with same CATH superfamily
4BA1I 2JVZA 3NCVA 2CTMA 1V9NA 3OTOH 4FJUA 4DUYH 4GKKH 4JVYA 2A1SA 2K1HA 2CWHA 2VQFH 4PDBA 2MJHA 1PQXA 1WTJA 1Z2IA 2D9IA 4FJSA 1XMQH 4OCHA 1WE8A 4DR2H 1IBKH 1FKAH 2QNDA 4DV2H 2CPQA 2Y3MA 2CTEA 4X64H 4DV6H 2HHHH 2O4CA 1X4NA 1TUAA 4LIJA 4DUZH 4JI1H 5FLXW 4LF5H 1HNZH 1NXUA 4NZTM 1J4WA 2FFMA 1ZZKA 4B8CD 2BL5A 1N36H 1WVNA 5DT9A 1AN7A 3FAUA 5IWAH 4JI8H 2UUBH 2UU9H 2M8WA 1J5KA 2JZXA 2ANNA 3KDKA 4DR1H 3VKEA 2AXYA 2CTJA 4LF8H 2NN6G 4JI0H 1UG8A 3EZJA 2X06A 4K0KH 1VIHA 1X9ZA 4AIMA 4YHHH 4JI4H 1N34H 1HR0H 3GABA 2G8YA 2HH2A 4DV1H 4LF4H 4OD6A 4WANA 1KHMA 2OPVA 2LRRA 1WHRA 4AQYH 2VKCA 4WALA 1F0XA 2BA0A 1ODHA 5IT9W 3V69A 4LF7H 2UUAH 4QMFB 2E5LH 4DR3H 2JEBI 3T1YH 2E3UA 2CPMA 4JI2H 1XNRH 3SB1A 4LF6H 4DR6H 1V8CA 1ZZIA 4EC5A 5JEAG 4JVHA 4DV5H 4NXMH 1IBMH 4DR5H 4DV4H 3GR5A 4E9JA 3J80W 4DV7H 4B8TA 4NXNH 2CTKA 2LTLA 4X66H 1XNQH 1I6UA 3J7AK 2ZM6H 1HNWH 2UXBH 2Z0SA 1XMOH 2LTMA 4OO1G 4B3TH 5LMNH 4IFDG 4LFAH 2PY9A 4GKJH 2PT7G 2ANRA 2P2RA 4DR7H 2CWFA 2F4VH 4OX9H 3L7ZC 4X65H 3UOEA 4AM3A 1FJGH 4DR4H 4JI6H 4JI7H 2FPHX 2FMRA 2JE6I 1HNXH 2HH3A 3I0PA 1N32H 4B3MH 2UXCH 4JI3H 1X0AA 1DT4A 1VBIA 4X62H 4JYAH 1EC6A 3AEVB 2OPUA 1DTJA 4H8AA 3OETA 5C0XG 1IBLH 1MSZA 1K1GA 4NZRM 4B3RH 4LFCH 3U1KA 5A2QW 2M6QA 4G08A 1VIGA 4KHPH 2UUCH 2JA9A 1SEIA 3OSSD 3GKUA 2YQRA 4LF9H 3KDGA 3JAMW 3RF2A 1J5EH 4BA2I 2CTLA 2VQEH 4JV5H 4NBQA 5K36G 3T1HH 4JI5H 2DGRA 1X4MA 4LFBH 4B3SH 2LF0A 4YY3H 2PQUA 3QD7X 5LL6b 3J81W 1XRHA 2UXDH 2ZQEA 5BR8H 2JEAI 1ZZJA 5LMUH 4DV0H 1ZTGA 1S03G 4DV3H 1N33H 2CTFA 1I94H 1S20A
chains in the Genus database with same CATH topology
4BA1I 2JVZA 1K1GA 2CTMA 4B8TA 2CTKA 3U1KA 4JVYA 1VIGA 2HH2A 2JA9A 2Z0SA 2MJHA 4WANA 1KHMA 2OPVA 4OO1G 2YQRA 4IFDG 1WE8A 2PY9A 4WALA 4BA2I 2CTLA 2QNDA 2BA0A 2CPQA 2CTEA 3V69A 2ANRA 4LIJA 1X4NA 1TUAA 4NBQA 2P2RA 4QMFB 5K36G 2DGRA 1X4MA 1J4WA 3L7ZC 1ZZKA 2BL5A 2JEBI 1WVNA 2E3UA 4AM3A 2PQUA 2FMRA 2JE6I 1J5KA 2HH3A 2JZXA 2ANNA 2JEAI 1ZZJA 2AXYA 3VKEA 5JEAG 1DT4A 1ZZIA 2CTJA 1ZTGA 2NN6G 4JVHA 3AEVB 2OPUA 1DTJA 2CTFA 1EC6A 5C0XG 1VIHA 4AIMA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4BA1 I;  2JVZ A;  1K1G A;  2CTM A;  4B8T A;  2CTK A;  3U1K A;  4JVY A;  1VIG A;  2HH2 A;  2JA9 A;  2Z0S A;  2MJH A;  4WAN A;  1KHM A;  2OPV A;  4OO1 G;  2YQR A;  4IFD G;  1WE8 A;  2PY9 A;  4WAL A;  4BA2 I;  2CTL A;  2QND A;  2BA0 A;  2CPQ A;  2CTE A;  3V69 A;  2ANR A;  4LIJ A;  1X4N A;  1TUA A;  4NBQ A;  2P2R A;  4QMF B;  5K36 G;  2DGR A;  1X4M A;  1J4W A;  3L7Z C;  1ZZK A;  2BL5 A;  2JEB I;  1WVN A;  2E3U A;  4AM3 A;  2PQU A;  2FMR A;  2JE6 I;  1J5K A;  2HH3 A;  2JZX A;  2ANN A;  2JEA I;  1ZZJ A;  2AXY A;  3VKE A;  5JEA G;  1DT4 A;  1ZZI A;  2CTJ A;  1ZTG A;  2NN6 G;  4JVH A;  3AEV B;  2OPU A;  1DTJ A;  2CTF A;  1EC6 A;  5C0X G;  1VIH A;  4AIM A; 
#chains in the Genus database with same CATH topology
 4BA1 I;  2JVZ A;  3NCV A;  2CTM A;  1V9N A;  3OTO H;  4FJU A;  4DUY H;  4GKK H;  4JVY A;  2A1S A;  2K1H A;  2CWH A;  2VQF H;  4PDB A;  2MJH A;  1PQX A;  1WTJ A;  1Z2I A;  2D9I A;  4FJS A;  1XMQ H;  4OCH A;  1WE8 A;  4DR2 H;  1IBK H;  1FKA H;  2QND A;  4DV2 H;  2CPQ A;  2Y3M A;  2CTE A;  4X64 H;  4DV6 H;  2HHH H;  2O4C A;  1X4N A;  1TUA A;  4LIJ A;  4DUZ H;  4JI1 H;  5FLX W;  4LF5 H;  1HNZ H;  1NXU A;  4NZT M;  1J4W A;  2FFM A;  1ZZK A;  4B8C D;  2BL5 A;  1N36 H;  1WVN A;  5DT9 A;  1AN7 A;  3FAU A;  5IWA H;  4JI8 H;  2UUB H;  2UU9 H;  2M8W A;  1J5K A;  2JZX A;  2ANN A;  3KDK A;  4DR1 H;  3VKE A;  2AXY A;  2CTJ A;  4LF8 H;  2NN6 G;  4JI0 H;  1UG8 A;  3EZJ A;  2X06 A;  4K0K H;  1VIH A;  1X9Z A;  4AIM A;  4YHH H;  4JI4 H;  1N34 H;  1HR0 H;  3GAB A;  2G8Y A;  2HH2 A;  4DV1 H;  4LF4 H;  4OD6 A;  4WAN A;  1KHM A;  2OPV A;  2LRR A;  1WHR A;  4AQY H;  2VKC A;  4WAL A;  1F0X A;  2BA0 A;  1ODH A;  5IT9 W;  3V69 A;  4LF7 H;  2UUA H;  4QMF B;  2E5L H;  4DR3 H;  2JEB I;  3T1Y H;  2E3U A;  2CPM A;  4JI2 H;  1XNR H;  3SB1 A;  4LF6 H;  4DR6 H;  1V8C A;  1ZZI A;  4EC5 A;  5JEA G;  4JVH A;  4DV5 H;  4NXM H;  1IBM H;  4DR5 H;  4DV4 H;  3GR5 A;  4E9J A;  3J80 W;  4DV7 H;  4B8T A;  4NXN H;  2CTK A;  2LTL A;  4X66 H;  1XNQ H;  1I6U A;  3J7A K;  2ZM6 H;  1HNW H;  2UXB H;  2Z0S A;  1XMO H;  2LTM A;  4OO1 G;  4B3T H;  5LMN H;  4IFD G;  4LFA H;  2PY9 A;  4GKJ H;  2PT7 G;  2ANR A;  2P2R A;  4DR7 H;  2CWF A;  2F4V H;  4OX9 H;  3L7Z C;  4X65 H;  3UOE A;  4AM3 A;  1FJG H;  4DR4 H;  4JI6 H;  4JI7 H;  2FPH X;  2FMR A;  2JE6 I;  1HNX H;  2HH3 A;  3I0P A;  1N32 H;  4B3M H;  2UXC H;  4JI3 H;  1X0A A;  1DT4 A;  1VBI A;  4X62 H;  4JYA H;  1EC6 A;  3AEV B;  2OPU A;  1DTJ A;  4H8A A;  3OET A;  5C0X G;  1IBL H;  1MSZ A;  1K1G A;  4NZR M;  4B3R H;  4LFC H;  3U1K A;  5A2Q W;  2M6Q A;  4G08 A;  1VIG A;  4KHP H;  2UUC H;  2JA9 A;  1SEI A;  3OSS D;  3GKU A;  2YQR A;  4LF9 H;  3KDG A;  3JAM W;  3RF2 A;  1J5E H;  4BA2 I;  2CTL A;  2VQE H;  4JV5 H;  4NBQ A;  5K36 G;  3T1H H;  4JI5 H;  2DGR A;  1X4M A;  4LFB H;  4B3S H;  2LF0 A;  4YY3 H;  2PQU A;  3QD7 X;  5LL6 b;  3J81 W;  1XRH A;  2UXD H;  2ZQE A;  5BR8 H;  2JEA I;  1ZZJ A;  5LMU H;  4DV0 H;  1ZTG A;  1S03 G;  4DV3 H;  1N33 H;  2CTF A;  1I94 H;  1S20 A; 
#chains in the Genus database with same CATH homology
 4BA1 I;  2JVZ A;  1K1G A;  2CTM A;  4B8T A;  2CTK A;  3U1K A;  4JVY A;  1VIG A;  2HH2 A;  2JA9 A;  2Z0S A;  2MJH A;  4WAN A;  1KHM A;  2OPV A;  4OO1 G;  2YQR A;  4IFD G;  1WE8 A;  2PY9 A;  4WAL A;  4BA2 I;  2CTL A;  2QND A;  2BA0 A;  2CPQ A;  2CTE A;  3V69 A;  2ANR A;  4LIJ A;  1X4N A;  1TUA A;  4NBQ A;  2P2R A;  4QMF B;  5K36 G;  2DGR A;  1X4M A;  1J4W A;  3L7Z C;  1ZZK A;  2BL5 A;  2JEB I;  1WVN A;  2E3U A;  4AM3 A;  2PQU A;  2FMR A;  2JE6 I;  1J5K A;  2HH3 A;  2JZX A;  2ANN A;  2JEA I;  1ZZJ A;  2AXY A;  3VKE A;  5JEA G;  1DT4 A;  1ZZI A;  2CTJ A;  1ZTG A;  2NN6 G;  4JVH A;  3AEV B;  2OPU A;  1DTJ A;  2CTF A;  1EC6 A;  5C0X G;  1VIH A;  4AIM A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...