1J6TB

Complex of enzyme iiamtl and the histidine-containing phosphocarrier protein hpr from escherichia coli nmr, restrained regularized mean structure
Total Genus 19
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
19
sequence length
85
structure length
85
Chain Sequence
MFQQEVTITAPNGLHTRPAAQFVKEAKGFTSEITVTSNGKSASAKSLFKLQTLGLTQGTVVTISAEGEDEQKAVEHLVKLMAELE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Transferase
molecule keywords PTS SYSTEM, MANNITOL-SPECIFIC IIABC COMPONENT
publication title Solution Structure of the Phosphoryl Transfer Complex between the Cytoplasmic A Domain of the Mannitol Transporter IImannitol and HPr of the Escherichia coli Phosphotransferase System
pubmed doi rcsb
source organism Escherichia coli
total genus 19
structure length 85
sequence length 85
ec nomenclature
pdb deposition date 2002-08-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF00381 PTS-HPr PTS HPr component phosphorylation site
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1340.10 Alpha Beta 2-Layer Sandwich Histidine-containing Protein; Chain: A; HPr-like 1j6tB00
1Y50A 1PCHA 2LRLD 3CCDA 1Y51A 2OENL 1SPHA 2FEPS 1OPDA 3EZAB 5T1NA 3EZBB 1QFRA 2NZVL 3OQMD 1KKLH 2AK7A 5T17A 1K1CA 1KKMH 1RZRL 3LNWA 1MO1B 3OQND 1J6TB 2NZUL 1CM2A 1JEMA 1FU0A 1Y4YA 2HIDA 1ZVVJ 1KA5A 1POHA 1MO1A 5T1OA 1PTFA 3OQOD 2LRKD 3LFGA 3LE5A 1TXEA 3IHSA 1CM3A 1QR5A 2XDFC 4XWJB 3LE3A 3EZEB 1MU4A 1VRCC 1GGRB 3LE1A 2HPRA 2RLZA 1HDNA 1PFHA 2JELP
chains in the Genus database with same CATH superfamily
1Y50A 1PCHA 2LRLD 3CCDA 1Y51A 2OENL 1SPHA 2FEPS 1OPDA 3EZAB 5T1NA 3EZBB 1QFRA 2NZVL 3OQMD 1KKLH 1J5YA 2AK7A 5T17A 1K1CA 1KKMH 1RZRL 3LNWA 1MO1B 3OQND 1J6TB 2NZUL 1CM2A 1JEMA 1FU0A 1Y4YA 2HIDA 1ZVVJ 1KA5A 1POHA 1MO1A 5T1OA 1PTFA 3OQOD 2LRKD 3LFGA 3LE5A 1TXEA 3IHSA 1CM3A 1QR5A 2XDFC 4XWJB 3LE3A 3EZEB 1MU4A 1VRCC 1GGRB 3LE1A 2HPRA 2RLZA 1HDNA 1PFHA 2JELP
chains in the Genus database with same CATH topology
1Y50A 1PCHA 2LRLD 3CCDA 1Y51A 2OENL 1SPHA 2FEPS 1OPDA 3EZAB 5T1NA 3EZBB 1QFRA 2NZVL 3OQMD 1KKLH 2AK7A 5T17A 1K1CA 1KKMH 1RZRL 3LNWA 1MO1B 3OQND 1J6TB 2NZUL 1CM2A 1JEMA 1FU0A 1Y4YA 2HIDA 1ZVVJ 1KA5A 1POHA 1MO1A 5T1OA 1PTFA 3OQOD 2LRKD 3LFGA 3LE5A 1TXEA 3IHSA 1CM3A 1QR5A 2XDFC 4XWJB 3LE3A 3EZEB 1MU4A 1VRCC 1GGRB 3LE1A 2HPRA 2RLZA 1HDNA 1PFHA 2JELP
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1Y50 A;  1PCH A;  2LRL D;  3CCD A;  1Y51 A;  2OEN L;  1SPH A;  2FEP S;  1OPD A;  3EZA B;  5T1N A;  3EZB B;  1QFR A;  2NZV L;  3OQM D;  1KKL H;  2AK7 A;  5T17 A;  1K1C A;  1KKM H;  1RZR L;  3LNW A;  1MO1 B;  3OQN D;  1J6T B;  2NZU L;  1CM2 A;  1JEM A;  1FU0 A;  1Y4Y A;  2HID A;  1ZVV J;  1KA5 A;  1POH A;  1MO1 A;  5T1O A;  1PTF A;  3OQO D;  2LRK D;  3LFG A;  3LE5 A;  1TXE A;  3IHS A;  1CM3 A;  1QR5 A;  2XDF C;  4XWJ B;  3LE3 A;  3EZE B;  1MU4 A;  1VRC C;  1GGR B;  3LE1 A;  2HPR A;  2RLZ A;  1HDN A;  1PFH A;  2JEL P; 
#chains in the Genus database with same CATH topology
 1Y50 A;  1PCH A;  2LRL D;  3CCD A;  1Y51 A;  2OEN L;  1SPH A;  2FEP S;  1OPD A;  3EZA B;  5T1N A;  3EZB B;  1QFR A;  2NZV L;  3OQM D;  1KKL H;  1J5Y A;  2AK7 A;  5T17 A;  1K1C A;  1KKM H;  1RZR L;  3LNW A;  1MO1 B;  3OQN D;  1J6T B;  2NZU L;  1CM2 A;  1JEM A;  1FU0 A;  1Y4Y A;  2HID A;  1ZVV J;  1KA5 A;  1POH A;  1MO1 A;  5T1O A;  1PTF A;  3OQO D;  2LRK D;  3LFG A;  3LE5 A;  1TXE A;  3IHS A;  1CM3 A;  1QR5 A;  2XDF C;  4XWJ B;  3LE3 A;  3EZE B;  1MU4 A;  1VRC C;  1GGR B;  3LE1 A;  2HPR A;  2RLZ A;  1HDN A;  1PFH A;  2JEL P; 
#chains in the Genus database with same CATH homology
 1Y50 A;  1PCH A;  2LRL D;  3CCD A;  1Y51 A;  2OEN L;  1SPH A;  2FEP S;  1OPD A;  3EZA B;  5T1N A;  3EZB B;  1QFR A;  2NZV L;  3OQM D;  1KKL H;  2AK7 A;  5T17 A;  1K1C A;  1KKM H;  1RZR L;  3LNW A;  1MO1 B;  3OQN D;  1J6T B;  2NZU L;  1CM2 A;  1JEM A;  1FU0 A;  1Y4Y A;  2HID A;  1ZVV J;  1KA5 A;  1POH A;  1MO1 A;  5T1O A;  1PTF A;  3OQO D;  2LRK D;  3LFG A;  3LE5 A;  1TXE A;  3IHS A;  1CM3 A;  1QR5 A;  2XDF C;  4XWJ B;  3LE3 A;  3EZE B;  1MU4 A;  1VRC C;  1GGR B;  3LE1 A;  2HPR A;  2RLZ A;  1HDN A;  1PFH A;  2JEL P; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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