1J6WA

Crystal structure of haemophilus influenzae luxs
Total Genus 41
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
41
sequence length
161
structure length
161
Chain Sequence
LLDSFKVDHTKMNAPAVRIAKTMLTPKGDNITVFDLRFCIPNKEILSPKGIHTLEHLFAGFMRDHLNGDSIEIIDISPMGCRTGFYMSLIGTPNEQKVSEAWLASMQDVLGVQDQASIPELNIYQCGSYTEHSLEDAHEIAKNVIARGIGVNKNEDLSLDN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Signaling protein
molecule keywords AUTOINDUCER-2 PRODUCTION PROTEIN LUXS
publication title A structural genomics approach to the study of quorum sensing: crystal structures of three LuxS orthologs.
pubmed doi rcsb
source organism Haemophilus influenzae
total genus 41
structure length 161
sequence length 161
chains with identical sequence B
ec nomenclature ec 4.4.1.21: S-ribosylhomocysteine lyase.
pdb deposition date 2001-05-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02664 LuxS S-Ribosylhomocysteinase (LuxS)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1360.80 Alpha Beta 2-Layer Sandwich Gyrase A; domain 2 S-ribosylhomocysteinase (LuxS) 1j6wA00
1VJEA 1J6WA 1INNA 1J98A 1J6XA 4XCHA 5E68A 1IE0A 2FQTA 2FQOA 1JVIA 1JOEA 1VH2A 1J6VA 1VGXA 1JQWA 1YCLA
chains in the Genus database with same CATH superfamily
2JA7K 1XZQB 1EFWA 1JOEA 3QX3A 5C4XC 3S1NK 4KDDA 3HOXC 4GTEA 1J6WA 3L4KA 5IOSA 1VH2A 2R7ZC 1O2FB 4NOIA 3Q3QA 4AH6A 1O27A 4A3BK 4YG2A 3TFJA 2YU9C 2JA5A 3HOUC 1O2AA 3LAJA 3RZOC 4BBRC 1DD5A 4A3CK 3S17K 3GTMA 4YFXA 3FKIK 4OIOA 1I50A 4J3NA 3CQZA 2B63C 3N0CA 3BP8C 1IL2A 3SZZA 3HXAA 1I6VA 1B4BA 1B4AA 1PJ5A 5JFEA 1TWGK 1O26A 2CFAA 4XLNA 3GTKA 4QIWD 3JSTA 1Y1VK 4LR2A 4GTAA 1X31C 1DCOA 1SFOA 3GTGA 2EBBA 3K7AC 4BY7C 3GTPA 4KM8A 1WOSA 3HOZC 1Y1WK 3H0GC 4MQ9A 4QIWL 3I4MC 2E2IC 4GTFA 3BUEA 2V6TA 2NVTC 3GTLK 4A3IK 5TMFA 1EK8A 5D4DA 4O2DA 4BY1C 2R92C 3S14C 4BKWA 3HOXK 3LAPA 2NVXC 2JA7C 4Q4ZA 4KAWX 1F9NA 5TMCA 2ZUEA 2YU9K 2JA6A 3HOUK 1WQGA 3NUHA 4KARA 1J6VA 3GTQK 3HOWC 1YCLA 5IYCK 1INNA 2B63K 2Y0SD 2A6HA 3FKIC 5FJ8K 1XZQA 5TJ3A 4OIPA 1WCMA 2R93C 3PO3K 1JVIA 2NVYC 1TWHA 1XPPA 2W7VA 5C4JC 2Y0SL 1XZPA 3LPXA 1IS1A 4BY7K 4QJVB 2ZUFA 3HOZK 2E2JC 1L0WA 1JQWA 4BLAA 3I4MK 2E2IK 3BP3A 4KB2A 3I4NK 1O25A 1ISEA 2NVTK 3GTOA 4X6AC 1Y1WC 2R92K 1BGWA 4G0WA 3HOVC 1WIHA 1YNJA 2NVXK 3GTLC 1J6XA 4YFNA 2JA5C 1WOOA 3S1QK 4KMUA 2RGRA 1I50C 1TWAA 1TWGA 2Y3PA 3T01A 1RU0A 5CHPA 3HOWK 4WJ3M 1Y1VA 5IP7C 1I3QA 2PA8D 5CJ9A 3ADAC 3L4JA 1IE0A 4GFQA 3GTQC 4WJ4A 4KB4A 4PAAA 5IYCC 4KASA 2VUMA 3GTKC 3OREA 2E2HA 2WB1D 4A3EC 2WAQD 2R93K 4A3KC 3FOEA 1HI9A 2PA8L 3OEPA 3GTJK 1TWFC 2GSOA 3GTGC 2NVYK 4KMHA 5C4JK 4Y7NC 3TTGA 3PO3C 2PPBA 4A93C 1WOPA 1R9TC 2WB1L 4KMDA 2E2JK 2WAQL 4OIRA 5HL8A 4Q5SA 1V5VA 3ERED 4A3FK 2R7ZA 4C3IC 4BXXC 2XCQA 4LK1A 4X6AK 4KN7A 4LOWA 3V4GA 4GTDA 4A3GC 3HOVK 4P5AA 3I4NC 3GEHA 5EGHA 5IOTA 2D6FC 1AB4A 4G7OA 3TFIA 5FLMC 3M3YC 4C3HC 2JA5K 1G51A 2P8TA 3OPFA 1K83A 4A3LC 4A3JK 3GTMK 1WSVA 1I50K 5L46A 3S2HC 2PMZD 2PHCB 1O2BA 4QJVA 1HQMA 5M3MK 1WORA 5IP7K 3S1QC 4GTBA 2O5JA 5IP9C 2NVQK 4LJZA 4AYBD 1WCMC 3GTKK 2PMZL 4KN4A 5IOQA 4A3EK 1GE9A 3H0GA 4A3KK 1TWHC 4Y52C 2FQTA 1EI6A 3S1MC 2A69A 1SFOK 1TWFK 3GTGK 3A8KA 4BBSC 1XXCA 4Y7NK 3GTPK 3S15K 3HKZD 4KMAA 4AYBL 2GSUA 4A93K 3SZYA 5JVOA 1R9TK 4C3JK 4XLPA 3GTJC 3AQPA 4WILA 1TWCC 2JA7A 3A8IA 1VLOA 4OINA 4C3IK 4BXXK 5EGEA 4P9SA 3HKZL 4G7ZA 1VRQC 1IBAA 4G0UA 1KQ4A 4A3GK 4A3FC 2KWAA 1USMA 4C2MK 5FLMK 3M3YK 4C3HK 5M5YK 3T00A 4GTLA 1TWAC 4A3LK 3FKIA 1SMYA 4XCHA 4A3MK 3AD9C 3MMLB 4KATA 4YFKA 3S2HK 1I3QC 1EH1A 2R93A 1DCPA 3PO2C 3M4OC 3GIRA 3S1RC 4A3JC 1O24A 3GTMC 4KM9A 5IP9K 3AD7C 2VUMC 3S2DK 2E2HC 1IW7A 2GAHC 3CQZC 1BJTA 1WCMK 4MEXA 2A6EA 1XXAA 2NVQC 1TWHK 1USOA 4Y52K 2V6SA 5IYDC 3S1MK 1C0AA 4BBSK 1I6HK 3AQOA 4A3DC 3G4AA 1Y1WA 2P5MA 4ILDA 2XCOA 1SFOC 1TWCK 3GTLA 3GTPC 1XZPB 4PABA 3HOYC 3S15C 3GTOK 3G4CA 5M5WK 1PJ6A 4C3JC 2XCRB 2JH3A 3S16C 5C44K 1YX2A 3RZDK 3VA7A 1DCHA 3GEIA 3GEEA 1ZYRA 2CW0A 4GT9A 2JA8K 4P5BA 1K83C 4DDQA 2YU9A 4LQYA 4FM9A 3GDZA 1TWAK 5IORA 3GTQA 5IYBK 4FZBA 1XXBA 4C2MC 2FQOA 1ZQ1C 1ZBSA 3AD8C 1ZXOA 1I3QK 2RH6A 2B63A 4LK0A 3PO2K 2JA6C 3M4OK 3S1RK 1YNNA 2BE5A 1TWFA 1EQRA 4A3MC 1WQHA 4GTCA 1F93A 2VUMK 2ZFZA 2E2HK 3CQZK 1J98A 1F7UA 1R9TA 4MEYA 3S2DC 5IYDK 5E68A 5C3EC 5C4XK 4A3DK 4ZH4A 3H3VD 3WODA 2E2IA 4JK1A 2R7ZK 3FOFA 3A8JA 1IQ0A 1I6HC 4G0VA 3S1NC 2CFAB 3HOYK 2R92A 4GZYA 1VGXA 3CAGA 4M1XA 3RZOK 4BBRK 4OIQA 4C45A 3S16K 1BDFA 3H3VL 2NVXA 2A68A 3EQLA 1O28A 4G7HA 4A3BC 3GTOC 4RMFA 3S0XA 3T02A 3GSIA 4A3CC 1K83K 3S17C 4XSZA 5C44C 3RZDC 3TFHA 3DXJA 2JA8C 4A3IC 3N3YA 2JA6K 1TWGC 4KC6A 5IYBC 1UV7A 2GAGC 4BLBA 3K7AK 1WQFA 1Y1VC 3H0GK 2O5IA 4LLGA 3GTJA 2NVYA 4XSXA 1VJEA 1TWCA 5M5XK 2GSNA 3IPJA 5M3FK 3N0BA 1O29A 4BY1K 1WSRA 5C3EK 1PJ7A 3S14K 2V6UA 3FHZA 1BS2A 1F7VA 1ZVUA 3AH5A
chains in the Genus database with same CATH topology
1VJEA 1J6WA 1INNA 1J98A 1J6XA 4XCHA 5E68A 1IE0A 2FQTA 2FQOA 1JVIA 1JOEA 1VH2A 1J6VA 1VGXA 1JQWA 1YCLA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1VJE A;  1J6W A;  1INN A;  1J98 A;  1J6X A;  4XCH A;  5E68 A;  1IE0 A;  2FQT A;  2FQO A;  1JVI A;  1JOE A;  1VH2 A;  1J6V A;  1VGX A;  1JQW A;  1YCL A; 
#chains in the Genus database with same CATH topology
 2JA7 K;  1XZQ B;  1EFW A;  1JOE A;  3QX3 A;  5C4X C;  3S1N K;  4KDD A;  3HOX C;  4GTE A;  1J6W A;  3L4K A;  5IOS A;  1VH2 A;  2R7Z C;  1O2F B;  4NOI A;  3Q3Q A;  4AH6 A;  1O27 A;  4A3B K;  4YG2 A;  3TFJ A;  2YU9 C;  2JA5 A;  3HOU C;  1O2A A;  3LAJ A;  3RZO C;  4BBR C;  1DD5 A;  4A3C K;  3S17 K;  3GTM A;  4YFX A;  3FKI K;  4OIO A;  1I50 A;  4J3N A;  3CQZ A;  2B63 C;  3N0C A;  3BP8 C;  1IL2 A;  3SZZ A;  3HXA A;  1I6V A;  1B4B A;  1B4A A;  1PJ5 A;  5JFE A;  1TWG K;  1O26 A;  2CFA A;  4XLN A;  3GTK A;  4QIW D;  3JST A;  1Y1V K;  4LR2 A;  4GTA A;  1X31 C;  1DCO A;  1SFO A;  3GTG A;  2EBB A;  3K7A C;  4BY7 C;  3GTP A;  4KM8 A;  1WOS A;  3HOZ C;  1Y1W K;  3H0G C;  4MQ9 A;  4QIW L;  3I4M C;  2E2I C;  4GTF A;  3BUE A;  2V6T A;  2NVT C;  3GTL K;  4A3I K;  5TMF A;  1EK8 A;  5D4D A;  4O2D A;  4BY1 C;  2R92 C;  3S14 C;  4BKW A;  3HOX K;  3LAP A;  2NVX C;  2JA7 C;  4Q4Z A;  4KAW X;  1F9N A;  5TMC A;  2ZUE A;  2YU9 K;  2JA6 A;  3HOU K;  1WQG A;  3NUH A;  4KAR A;  1J6V A;  3GTQ K;  3HOW C;  1YCL A;  5IYC K;  1INN A;  2B63 K;  2Y0S D;  2A6H A;  3FKI C;  5FJ8 K;  1XZQ A;  5TJ3 A;  4OIP A;  1WCM A;  2R93 C;  3PO3 K;  1JVI A;  2NVY C;  1TWH A;  1XPP A;  2W7V A;  5C4J C;  2Y0S L;  1XZP A;  3LPX A;  1IS1 A;  4BY7 K;  4QJV B;  2ZUF A;  3HOZ K;  2E2J C;  1L0W A;  1JQW A;  4BLA A;  3I4M K;  2E2I K;  3BP3 A;  4KB2 A;  3I4N K;  1O25 A;  1ISE A;  2NVT K;  3GTO A;  4X6A C;  1Y1W C;  2R92 K;  1BGW A;  4G0W A;  3HOV C;  1WIH A;  1YNJ A;  2NVX K;  3GTL C;  1J6X A;  4YFN A;  2JA5 C;  1WOO A;  3S1Q K;  4KMU A;  2RGR A;  1I50 C;  1TWA A;  1TWG A;  2Y3P A;  3T01 A;  1RU0 A;  5CHP A;  3HOW K;  4WJ3 M;  1Y1V A;  5IP7 C;  1I3Q A;  2PA8 D;  5CJ9 A;  3ADA C;  3L4J A;  1IE0 A;  4GFQ A;  3GTQ C;  4WJ4 A;  4KB4 A;  4PAA A;  5IYC C;  4KAS A;  2VUM A;  3GTK C;  3ORE A;  2E2H A;  2WB1 D;  4A3E C;  2WAQ D;  2R93 K;  4A3K C;  3FOE A;  1HI9 A;  2PA8 L;  3OEP A;  3GTJ K;  1TWF C;  2GSO A;  3GTG C;  2NVY K;  4KMH A;  5C4J K;  4Y7N C;  3TTG A;  3PO3 C;  2PPB A;  4A93 C;  1WOP A;  1R9T C;  2WB1 L;  4KMD A;  2E2J K;  2WAQ L;  4OIR A;  5HL8 A;  4Q5S A;  1V5V A;  3ERE D;  4A3F K;  2R7Z A;  4C3I C;  4BXX C;  2XCQ A;  4LK1 A;  4X6A K;  4KN7 A;  4LOW A;  3V4G A;  4GTD A;  4A3G C;  3HOV K;  4P5A A;  3I4N C;  3GEH A;  5EGH A;  5IOT A;  2D6F C;  1AB4 A;  4G7O A;  3TFI A;  5FLM C;  3M3Y C;  4C3H C;  2JA5 K;  1G51 A;  2P8T A;  3OPF A;  1K83 A;  4A3L C;  4A3J K;  3GTM K;  1WSV A;  1I50 K;  5L46 A;  3S2H C;  2PMZ D;  2PHC B;  1O2B A;  4QJV A;  1HQM A;  5M3M K;  1WOR A;  5IP7 K;  3S1Q C;  4GTB A;  2O5J A;  5IP9 C;  2NVQ K;  4LJZ A;  4AYB D;  1WCM C;  3GTK K;  2PMZ L;  4KN4 A;  5IOQ A;  4A3E K;  1GE9 A;  3H0G A;  4A3K K;  1TWH C;  4Y52 C;  2FQT A;  1EI6 A;  3S1M C;  2A69 A;  1SFO K;  1TWF K;  3GTG K;  3A8K A;  4BBS C;  1XXC A;  4Y7N K;  3GTP K;  3S15 K;  3HKZ D;  4KMA A;  4AYB L;  2GSU A;  4A93 K;  3SZY A;  5JVO A;  1R9T K;  4C3J K;  4XLP A;  3GTJ C;  3AQP A;  4WIL A;  1TWC C;  2JA7 A;  3A8I A;  1VLO A;  4OIN A;  4C3I K;  4BXX K;  5EGE A;  4P9S A;  3HKZ L;  4G7Z A;  1VRQ C;  1IBA A;  4G0U A;  1KQ4 A;  4A3G K;  4A3F C;  2KWA A;  1USM A;  4C2M K;  5FLM K;  3M3Y K;  4C3H K;  5M5Y K;  3T00 A;  4GTL A;  1TWA C;  4A3L K;  3FKI A;  1SMY A;  4XCH A;  4A3M K;  3AD9 C;  3MML B;  4KAT A;  4YFK A;  3S2H K;  1I3Q C;  1EH1 A;  2R93 A;  1DCP A;  3PO2 C;  3M4O C;  3GIR A;  3S1R C;  4A3J C;  1O24 A;  3GTM C;  4KM9 A;  5IP9 K;  3AD7 C;  2VUM C;  3S2D K;  2E2H C;  1IW7 A;  2GAH C;  3CQZ C;  1BJT A;  1WCM K;  4MEX A;  2A6E A;  1XXA A;  2NVQ C;  1TWH K;  1USO A;  4Y52 K;  2V6S A;  5IYD C;  3S1M K;  1C0A A;  4BBS K;  1I6H K;  3AQO A;  4A3D C;  3G4A A;  1Y1W A;  2P5M A;  4ILD A;  2XCO A;  1SFO C;  1TWC K;  3GTL A;  3GTP C;  1XZP B;  4PAB A;  3HOY C;  3S15 C;  3GTO K;  3G4C A;  5M5W K;  1PJ6 A;  4C3J C;  2XCR B;  2JH3 A;  3S16 C;  5C44 K;  1YX2 A;  3RZD K;  3VA7 A;  1DCH A;  3GEI A;  3GEE A;  1ZYR A;  2CW0 A;  4GT9 A;  2JA8 K;  4P5B A;  1K83 C;  4DDQ A;  2YU9 A;  4LQY A;  4FM9 A;  3GDZ A;  1TWA K;  5IOR A;  3GTQ A;  5IYB K;  4FZB A;  1XXB A;  4C2M C;  2FQO A;  1ZQ1 C;  1ZBS A;  3AD8 C;  1ZXO A;  1I3Q K;  2RH6 A;  2B63 A;  4LK0 A;  3PO2 K;  2JA6 C;  3M4O K;  3S1R K;  1YNN A;  2BE5 A;  1TWF A;  1EQR A;  4A3M C;  1WQH A;  4GTC A;  1F93 A;  2VUM K;  2ZFZ A;  2E2H K;  3CQZ K;  1J98 A;  1F7U A;  1R9T A;  4MEY A;  3S2D C;  5IYD K;  5E68 A;  5C3E C;  5C4X K;  4A3D K;  4ZH4 A;  3H3V D;  3WOD A;  2E2I A;  4JK1 A;  2R7Z K;  3FOF A;  3A8J A;  1IQ0 A;  1I6H C;  4G0V A;  3S1N C;  2CFA B;  3HOY K;  2R92 A;  4GZY A;  1VGX A;  3CAG A;  4M1X A;  3RZO K;  4BBR K;  4OIQ A;  4C45 A;  3S16 K;  1BDF A;  3H3V L;  2NVX A;  2A68 A;  3EQL A;  1O28 A;  4G7H A;  4A3B C;  3GTO C;  4RMF A;  3S0X A;  3T02 A;  3GSI A;  4A3C C;  1K83 K;  3S17 C;  4XSZ A;  5C44 C;  3RZD C;  3TFH A;  3DXJ A;  2JA8 C;  4A3I C;  3N3Y A;  2JA6 K;  1TWG C;  4KC6 A;  5IYB C;  1UV7 A;  2GAG C;  4BLB A;  3K7A K;  1WQF A;  1Y1V C;  3H0G K;  2O5I A;  4LLG A;  3GTJ A;  2NVY A;  4XSX A;  1VJE A;  1TWC A;  5M5X K;  2GSN A;  3IPJ A;  5M3F K;  3N0B A;  1O29 A;  4BY1 K;  1WSR A;  5C3E K;  1PJ7 A;  3S14 K;  2V6U A;  3FHZ A;  1BS2 A;  1F7V A;  1ZVU A;  3AH5 A; 
#chains in the Genus database with same CATH homology
 1VJE A;  1J6W A;  1INN A;  1J98 A;  1J6X A;  4XCH A;  5E68 A;  1IE0 A;  2FQT A;  2FQO A;  1JVI A;  1JOE A;  1VH2 A;  1J6V A;  1VGX A;  1JQW A;  1YCL A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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