1J7GA

Structure of yihz from haemophilus influenzae (hi0670), a d-tyr-trna(tyr) deacylase
Total Genus 33
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
33
sequence length
144
structure length
144
Chain Sequence
MIALIQRVSQAKVDVKGETIGKIGKGLLVLLGVEKEDNREKADKLAEKVLNYRIFSDENDKMNLNVQQAQGELLIVSQFTLAADTQKGLRPSFSKGASPALANELYEYFIQKCAEKLPVSTGQFAADMQVSLTNDGPVTFWLNV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords D-tyrosyl-tRNA(Tyr) deacylase
publication title A Catalytic Mechanism for D-Tyr-tRNATyr Deacylase Based on the Crystal Structure of Hemophilus influenzae HI0670
pubmed doi rcsb
source organism Haemophilus influenzae rd kw20
total genus 33
structure length 144
sequence length 144
ec nomenclature ec 3.1.1.96: D-aminoacyl-tRNA deacylase.
pdb deposition date 2001-05-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02580 Tyr_Deacylase D-Tyr-tRNA(Tyr) deacylase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.50.80.10 Alpha Beta 3-Layer(bba) Sandwich D-tyrosyl-trna(Tyr) Deacylase; Chain: A; D-tyrosyl-trna(Tyr) Deacylase; Chain: A; 1j7gA00
3KOBA 4RRFA 4RRBA 4RR6A 4S0JA 4RRHA 3KO9A 4RRMA 4RRDA 3KO5A 4NBJA 3KO3A 4RRLA 2HKZA 2HL0A 3PD2A 4RRJA 4RRRA 3KNFA 3LMTA 3LMUA 4RRAA 3KO4A 4RRCA 1J7GA 5J61A 3KNPA 4RRGA 4RRQA 1TC5A 2HL1A 4NBIA 4S0KA 4S02A 2DBOA 4RR8A 1Y2QA 4S0LA 4RRIA 2OKVA 3PD4A 4RR9A 3KOCA 3KO7A 4S0IA 2HL2A 4RR7A 4RRKA 4S03A 3PD3A 3LMVA 3PD5A 3KODA 1JKEA
chains in the Genus database with same CATH superfamily
4RR6A 2EXAA 4S0JA 3A3IA 4RRDA 3KO3A 3A3FA 4RRRA 3KNFA 3LMTA 5CECA 2Y59A 2Y4AA 4RRGA 3V39A 5CEBA 4S0KA 4S02A 3ZVTA 2XDMA 2XLNA 4RR8A 4S0LA 4RRIA 3ZVWA 3PD3A 3LMVA 3PD5A 3KODA 2EX9A 4RRBA 1W5DA 2VGJA 3KO9A 2HKZA 2EX6A 3PD2A 4RRJA 2WKEA 3KO4A 1J7GA 5CEDA 4B4XA 5J61A 1TC5A 2Y55A 2DBOA 2XK1A 4S03A 4RRQA 3A3EA 4RRFA 4RRHA 3ZCZA 4RRMA 4NBJA 2HL0A 3LMUA 1W8YA 1W8QA 3KNPA 2HL1A 1Y2QA 4RR9A 2HL2A 4RRKA 2VGKA 4BENA 4NBIA 5CERA 1JKEA 3KOBA 2EX8A 3KO5A 2J9PA 4RRAA 4B4ZA 4RRCA 2EXBA 1W79A 2OKVA 3PD4A 3KOCA 2EX2A 3KO7A 4RR7A 4S0IA 4RRLA 3A3DA
chains in the Genus database with same CATH topology
4RR6A 2EXAA 4S0JA 3A3IA 4RRDA 3KO3A 3A3FA 4RRRA 3KNFA 3LMTA 5CECA 2Y59A 2Y4AA 4RRGA 3V39A 5CEBA 4S0KA 4S02A 3ZVTA 2XDMA 2XLNA 4RR8A 4S0LA 4RRIA 3ZVWA 3PD3A 3LMVA 3PD5A 3KODA 2EX9A 4RRBA 1W5DA 2VGJA 3KO9A 2HKZA 2EX6A 3PD2A 4RRJA 2WKEA 3KO4A 1J7GA 5CEDA 4B4XA 5J61A 1TC5A 2Y55A 2DBOA 2XK1A 4S03A 4RRQA 3A3EA 4RRFA 4RRHA 3ZCZA 4RRMA 4NBJA 2HL0A 3LMUA 1W8YA 1W8QA 3KNPA 2HL1A 1Y2QA 4RR9A 2HL2A 4RRKA 2VGKA 4BENA 4NBIA 5CERA 1JKEA 3KOBA 2EX8A 3KO5A 2J9PA 4RRAA 4B4ZA 4RRCA 2EXBA 1W79A 2OKVA 3PD4A 3KOCA 2EX2A 3KO7A 4RR7A 4S0IA 4RRLA 3A3DA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3KOB A;  4RRF A;  4RRB A;  4RR6 A;  4S0J A;  4RRH A;  3KO9 A;  4RRM A;  4RRD A;  3KO5 A;  4NBJ A;  3KO3 A;  4RRL A;  2HKZ A;  2HL0 A;  3PD2 A;  4RRJ A;  4RRR A;  3KNF A;  3LMT A;  3LMU A;  4RRA A;  3KO4 A;  4RRC A;  1J7G A;  5J61 A;  3KNP A;  4RRG A;  4RRQ A;  1TC5 A;  2HL1 A;  4NBI A;  4S0K A;  4S02 A;  2DBO A;  4RR8 A;  1Y2Q A;  4S0L A;  4RRI A;  2OKV A;  3PD4 A;  4RR9 A;  3KOC A;  3KO7 A;  4S0I A;  2HL2 A;  4RR7 A;  4RRK A;  4S03 A;  3PD3 A;  3LMV A;  3PD5 A;  3KOD A;  1JKE A; 
#chains in the Genus database with same CATH topology
 4RR6 A;  2EXA A;  4S0J A;  3A3I A;  4RRD A;  3KO3 A;  3A3F A;  4RRR A;  3KNF A;  3LMT A;  5CEC A;  2Y59 A;  2Y4A A;  4RRG A;  3V39 A;  5CEB A;  4S0K A;  4S02 A;  3ZVT A;  2XDM A;  2XLN A;  4RR8 A;  4S0L A;  4RRI A;  3ZVW A;  3PD3 A;  3LMV A;  3PD5 A;  3KOD A;  2EX9 A;  4RRB A;  1W5D A;  2VGJ A;  3KO9 A;  2HKZ A;  2EX6 A;  3PD2 A;  4RRJ A;  2WKE A;  3KO4 A;  1J7G A;  5CED A;  4B4X A;  5J61 A;  1TC5 A;  2Y55 A;  2DBO A;  2XK1 A;  4S03 A;  4RRQ A;  3A3E A;  4RRF A;  4RRH A;  3ZCZ A;  4RRM A;  4NBJ A;  2HL0 A;  3LMU A;  1W8Y A;  1W8Q A;  3KNP A;  2HL1 A;  1Y2Q A;  4RR9 A;  2HL2 A;  4RRK A;  2VGK A;  4BEN A;  4NBI A;  5CER A;  1JKE A;  3KOB A;  2EX8 A;  3KO5 A;  2J9P A;  4RRA A;  4B4Z A;  4RRC A;  2EXB A;  1W79 A;  2OKV A;  3PD4 A;  3KOC A;  2EX2 A;  3KO7 A;  4RR7 A;  4S0I A;  4RRL A;  3A3D A; 
#chains in the Genus database with same CATH homology
 4RR6 A;  2EXA A;  4S0J A;  3A3I A;  4RRD A;  3KO3 A;  3A3F A;  4RRR A;  3KNF A;  3LMT A;  5CEC A;  2Y59 A;  2Y4A A;  4RRG A;  3V39 A;  5CEB A;  4S0K A;  4S02 A;  3ZVT A;  2XDM A;  2XLN A;  4RR8 A;  4S0L A;  4RRI A;  3ZVW A;  3PD3 A;  3LMV A;  3PD5 A;  3KOD A;  2EX9 A;  4RRB A;  1W5D A;  2VGJ A;  3KO9 A;  2HKZ A;  2EX6 A;  3PD2 A;  4RRJ A;  2WKE A;  3KO4 A;  1J7G A;  5CED A;  4B4X A;  5J61 A;  1TC5 A;  2Y55 A;  2DBO A;  2XK1 A;  4S03 A;  4RRQ A;  3A3E A;  4RRF A;  4RRH A;  3ZCZ A;  4RRM A;  4NBJ A;  2HL0 A;  3LMU A;  1W8Y A;  1W8Q A;  3KNP A;  2HL1 A;  1Y2Q A;  4RR9 A;  2HL2 A;  4RRK A;  2VGK A;  4BEN A;  4NBI A;  5CER A;  1JKE A;  3KOB A;  2EX8 A;  3KO5 A;  2J9P A;  4RRA A;  4B4Z A;  4RRC A;  2EXB A;  1W79 A;  2OKV A;  3PD4 A;  3KOC A;  2EX2 A;  3KO7 A;  4RR7 A;  4S0I A;  4RRL A;  3A3D A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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