1J8BA

Structure of ybab from haemophilus influenzae (hi0442), a protein of unknown function
Total Genus 24
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
24
sequence length
92
structure length
92
Chain Sequence
LGGLMKQAQQMQEKMQKMQEEIAQLEVTGESGAGLVKITINGAHNCRRIDIDPSLMEDDKEMLEDLIAAAFNDAVRRAEELQKEKMASVTAG
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Structural genomics, unknown function
molecule keywords YbaB
publication title Crystal structure of YbaB from Haemophilus influenzae (HI0442), a protein of unknown function coexpressed with the recombinational DNA repair protein RecR
pubmed doi rcsb
source organism Haemophilus influenzae rd
total genus 24
structure length 92
sequence length 92
ec nomenclature
pdb deposition date 2001-05-21

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02575 YbaB_DNA_bd YbaB/EbfC DNA-binding family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1310.10 Alpha Beta 2-Layer Sandwich Ybab; Chain: A; Nucleoid-associated protein YbaB-like domain 1j8bA00
1YBXA 1J8BA 3F42A 1PUGA
chains in the Genus database with same CATH superfamily
1PUGA 1YBXA 2D46A 3FEWX 1WD5A 1J8BA 3F42A
chains in the Genus database with same CATH topology
1YBXA 1J8BA 3F42A 1PUGA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1YBX A;  1J8B A;  3F42 A;  1PUG A; 
#chains in the Genus database with same CATH topology
 1PUG A;  1YBX A;  2D46 A;  3FEW X;  1WD5 A;  1J8B A;  3F42 A; 
#chains in the Genus database with same CATH homology
 1YBX A;  1J8B A;  3F42 A;  1PUG A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...