1J98A

The 1.2 angstrom structure of bacillus subtilis luxs
Total Genus 45
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
45
sequence length
154
structure length
153
Chain Sequence
b'VESFELDHNAVVAPYVRHCGVHKVGTDGVVNKFDIRFCQPNKQAMKPDTIHTLEHLLAFTIRSHAEKYDHFDIIDISPMGQTGYYLVVSGETTSAEIVDLLEDTMKEAVEITEIPAANEKQCGQAKLHDLEGAKRLMRFWLSQDKEELLKVFG'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title The 1.2 A Structure of a Novel Quorum-Sensing Protein, Bacillus subtilis LuxS
pubmed doi rcsb
molecule keywords AUTOINDUCER-2 PRODUCTION PROTEIN LUXS
source organism Bacillus subtilis
molecule tags Signaling protein
total genus 45
structure length 153
sequence length 154
ec nomenclature ec 4.4.1.21: S-ribosylhomocysteine lyase.
pdb deposition date 2001-05-24

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02664 LuxS S-Ribosylhomocysteinase (LuxS)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1360.80 Alpha Beta 2-Layer Sandwich Gyrase A; domain 2 S-ribosylhomocysteinase (LuxS) 1j98A00
1J6XA 1JQWA 4XCHA 1J98A 1JVIA 1VH2A 5E68A 1VJEA 1J6VA 1IE0A 1JOEA 1YCLA 1VGXA 2FQOA 1INNA 1J6WA 2FQTA
chains in the Genus database with same CATH superfamily
4OIPA 2YU9K 3GTGK 2WB1L 5L46A 5CHPA 1YNNA 2GAGC 1USMA 2R7ZC 2WB1D 1SMYA 1XZPA 2CFAB 4C3HK 3PO2K 4BKWA 4BXXK 2NVXA 3Q3QA 1Y1VK 2E2HC 2JA8K 1TWGA 1VJEA 4A3DC 3N0CA 3BUEA 1AB4A 1TWCC 3FOFA 2R92K 3S1RK 1VH2A 4KMHA 1XZQB 3S15C 4ZH4A 2A6HA 4G0WA 4BY1C 3FKIK 2A6EA 2R93K 3A8IA 4G0UA 4LJZA 1I6VA 1X31C 3GTJA 3GTOA 3GTKK 2Y0SL 1GE9A 3WODA 5IYDC 1BJTA 4OIQA 2PMZL 2NVYK 2YU9C 4GTAA 2RH6A 1DCHA 2V6SA 4XCHA 3GTGC 4KMDA 4QJVB 1EK8A 3S2HK 1F7UA 1F7VA 3VA7A 3HOWK 4C3JK 2E2IK 3M4OK 5C4XK 3I4MK 4C3HC 4FZBA 1R9TK 3PO2C 4MQ9A 4KM9A 3RZDK 5JFEA 2JA8C 4BXXC 3HOZC 3GTLK 2JH3A 1TWFC 4AYBL 2E2JK 4A3FK 3IPJA 3S1MC 4MEXA 4P9SA 3GDZA 4GTBA 3FKIC 4KC6A 2R93C 3LPXA 3GEHA 5C3EK 3TTGA 2CFAA 3TFIA 3GTKC 3GTPA 1I3QK 4ILDA 5IP7K 1O2FB 1F93A 4P5BA 3LAPA 1Y1WA 2ZFZA 1XZQA 2B63C 3S2HC 4BY7K 3GEEA 2VUMA 1XZPB 3HOWC 4C3JC 2E2IC 2P8TA 3M3YK 3M4OC 1HI9A 1IW7A 1L0WA 5M3MK 3I4MC 1R9TC 5C4XC 1SFOK 3GTLC 2E2JC 5C44C 4A3FC 1JOEA 3T00A 2D6FC 5D4DA 4QJVA 1XXCA 1DD5A 5C3EC 4A3KC 4YFXA 3S17K 1TWGK 4QIWL 1I3QC 5IP7C 1B4BA 4KB4A 5EGEA 3L4KA 3PO3K 2NVTK 2GSUA 1I50K 1IE0A 5EGHA 2RGRA 3A8KA 4P5AA 4OIOA 1XPPA 3K7AK 1TWAK 3GSIA 2A69A 3GTJK 4C2MK 3GTOK 4G7HA 5M5XK 2WAQL 3M3YC 4C45A 2GAHC 2GSOA 3TFHA 3GTMK 5TMCA 1SFOC 2WAQD 4A93K 4GTLA 2NVQK 1DCOA 3T01A 4KDDA 3GTQA 4G7ZA 4X6AK 3HXAA 5FJ8K 4OIRA 2JA7A 1G51A 3S17C 1RU0A 4Q4ZA 3G4CA 2CW0A 3BP8C 3PO3C 1YNJA 4A3LK 1WIHA 4LR2A 2NVTC 1I50C 3AD8C 3HOVC 3K7AC 1IL2A 5FLMK 1TWAC 3ERED 1EFWA 1O2BA 4C2MC 3GTPK 1O26A 3GTMC 4YFNA 1VRQC 3HKZD 4A93C 1TWHK 3OEPA 1Y1WK 3S2DC 1IBAA 2NVQC 4G7OA 2V6UA 1TWCA 2VUMK 4A3BK 3CQZA 4DDQA 5IP9K 5M3FK 4A3IK 4Y52K 1O24A 2V6TA 4XLNA 3HOXK 1BS2A 1WSVA 1Y1VC 4A3LC 3AH5A 3FHZA 2R92C 3S1RC 1C0AA 3AD7C 4LLGA 5CJ9A 1ISEA 2ZUEA 2YU9A 5FLMC 4RMFA 1WORA 4KMAA 1WCMA 1J6XA 4KAWX 3H0GA 1TWHC 4YG2A 1WSRA 2PA8L 1Y1WC 2NVYC 1EI6A 2P5MA 4A3EK 3GEIA 1TWFA 2PA8D 4WJ3M 4A3BC 1O28A 5IP9C 2JA6K 4GTCA 4A3IC 4Y52C 3HOXC 1J6WA 3RZDC 1PJ5A 4Y7NK 1WOOA 4A3JK 3GTKA 2KWAA 4A3GK 5IYBK 5M5WK 3RZOK 4NOIA 1I6HK 1YCLA 4GTDA 4O2DA 2JA5A 2B63A 1J98A 1ZQ1C 5IOTA 4OINA 2NVXK 4KASA 1J6VA 3S16K 3SZYA 2W7VA 1ZBSA 3NUHA 2Y3PA 4A3EC 4YFKA 3MMLB 3H3VL 3ADAC 2XCRB 1DCPA 4GT9A 3I4NK 1XXBA 1O2AA 4BY7C 3H3VD 3OREA 2JA6C 4GTEA 4MEYA 1EQRA 1WQFA 4Y7NC 4A3CK 4A3JC 2PHCB 5C4JK 4Q5SA 4A3GC 1VGXA 5IYBC 3RZOC 3CQZK 4LK1A 3S0XA 1I6HC 4LOWA 5TJ3A 4WJ4A 4PABA 4J3NA 5IOQA 1XXAA 2NVXC 3V4GA 1TWGC 1F9NA 3S16C 4GZYA 3GIRA 3A8JA 1WOSA 3S14K 1SFOA 1K83A 1IS1A 3I4NC 1B4AA 3HOUK 4LK0A 1ZXOA 3GTJC 2O5IA 3GTOC 1WCMK 3HKZL 1ZVUA 3H0GK 3BP3A 2R7ZA 3FOEA 4A3CC 3AD9C 4PAAA 3HOZK 2XCOA 5C4JC 1TWFK 5IYCK 4KM8A 2E2HA 1WQHA 3CQZC 3N0BA 3S1MK 3LAJA 4X6AC 4KN7A 4FM9A 1I50A 4KN4A 1WOPA 2EBBA 4G0VA 3QX3A 1TWAA 1BGWA 4KB2A 3S14C 1VLOA 3GTMA 2Y0SD 3S1QK 3T02A 2JA5K 1O27A 2B63K 1KQ4A 2PMZD 3HOUC 3GTGA 1WCMC 3GTPC 1INNA 3H0GC 4LQYA 3OPFA 4BLAA 2O5JA 1HQMA 4BBSK 1JQWA 5IYCC 1Y1VA 4XSXA 5C44K 5IOSA 1ZYRA 2VUMC 2R92A 4AYBD 4BLBA 1O29A 3FKIA 2R93A 4A3KK 5M5YK 4BBRK 2ZUFA 1BDFA 4A3MK 3GTQK 3S1NK 3S1QC 1TWHA 4XLPA 2JA5C 2NVYA 2JA7K 5IORA 5E68A 2GSNA 4AH6A 1PJ7A 4XSZA 4KATA 4C3IK 3DXJA 3L4JA 2E2IA 3HOYK 2A68A 1R9TA 2FQOA 4JK1A 1K83K 4BBSC 4GFQA 3TFJA 3GTLA 4M1XA 1WQGA 3AQOA 3JSTA 4WILA 2XCQA 5HL8A 1YX2A 3CAGA 3G4AA 2R7ZK 4BBRC 1JVIA 2E2HK 4A3DK 4A3MC 1I3QA 3GTQC 2FQTA 4QIWD 1TWCK 3S1NC 3EQLA 3S15K 3HOVK 5JVOA 2JA7C 4BY1K 1EH1A 1USOA 4C3IC 1V5VA 1O25A 1PJ6A 3N3YA 1IQ0A 2JA6A 4KARA 2BE5A 3HOYC 4KMUA 4GTFA 5TMFA 3SZZA 5IYDK 1K83C 1UV7A 2PPBA 3S2DK 3AQPA
chains in the Genus database with same CATH topology
1J6XA 1JQWA 4XCHA 1J98A 1JVIA 1VH2A 5E68A 1VJEA 1J6VA 1IE0A 1JOEA 1YCLA 1VGXA 2FQOA 1INNA 1J6WA 2FQTA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1J6X A;  1JQW A;  4XCH A;  1J98 A;  1JVI A;  1VH2 A;  5E68 A;  1VJE A;  1J6V A;  1IE0 A;  1JOE A;  1YCL A;  1VGX A;  2FQO A;  1INN A;  1J6W A;  2FQT A; 
#chains in the Genus database with same CATH topology
 4OIP A;  2YU9 K;  3GTG K;  2WB1 L;  5L46 A;  5CHP A;  1YNN A;  2GAG C;  1USM A;  2R7Z C;  2WB1 D;  1SMY A;  1XZP A;  2CFA B;  4C3H K;  3PO2 K;  4BKW A;  4BXX K;  2NVX A;  3Q3Q A;  1Y1V K;  2E2H C;  2JA8 K;  1TWG A;  1VJE A;  4A3D C;  3N0C A;  3BUE A;  1AB4 A;  1TWC C;  3FOF A;  2R92 K;  3S1R K;  1VH2 A;  4KMH A;  1XZQ B;  3S15 C;  4ZH4 A;  2A6H A;  4G0W A;  4BY1 C;  3FKI K;  2A6E A;  2R93 K;  3A8I A;  4G0U A;  4LJZ A;  1I6V A;  1X31 C;  3GTJ A;  3GTO A;  3GTK K;  2Y0S L;  1GE9 A;  3WOD A;  5IYD C;  1BJT A;  4OIQ A;  2PMZ L;  2NVY K;  2YU9 C;  4GTA A;  2RH6 A;  1DCH A;  2V6S A;  4XCH A;  3GTG C;  4KMD A;  4QJV B;  1EK8 A;  3S2H K;  1F7U A;  1F7V A;  3VA7 A;  3HOW K;  4C3J K;  2E2I K;  3M4O K;  5C4X K;  3I4M K;  4C3H C;  4FZB A;  1R9T K;  3PO2 C;  4MQ9 A;  4KM9 A;  3RZD K;  5JFE A;  2JA8 C;  4BXX C;  3HOZ C;  3GTL K;  2JH3 A;  1TWF C;  4AYB L;  2E2J K;  4A3F K;  3IPJ A;  3S1M C;  4MEX A;  4P9S A;  3GDZ A;  4GTB A;  3FKI C;  4KC6 A;  2R93 C;  3LPX A;  3GEH A;  5C3E K;  3TTG A;  2CFA A;  3TFI A;  3GTK C;  3GTP A;  1I3Q K;  4ILD A;  5IP7 K;  1O2F B;  1F93 A;  4P5B A;  3LAP A;  1Y1W A;  2ZFZ A;  1XZQ A;  2B63 C;  3S2H C;  4BY7 K;  3GEE A;  2VUM A;  1XZP B;  3HOW C;  4C3J C;  2E2I C;  2P8T A;  3M3Y K;  3M4O C;  1HI9 A;  1IW7 A;  1L0W A;  5M3M K;  3I4M C;  1R9T C;  5C4X C;  1SFO K;  3GTL C;  2E2J C;  5C44 C;  4A3F C;  1JOE A;  3T00 A;  2D6F C;  5D4D A;  4QJV A;  1XXC A;  1DD5 A;  5C3E C;  4A3K C;  4YFX A;  3S17 K;  1TWG K;  4QIW L;  1I3Q C;  5IP7 C;  1B4B A;  4KB4 A;  5EGE A;  3L4K A;  3PO3 K;  2NVT K;  2GSU A;  1I50 K;  1IE0 A;  5EGH A;  2RGR A;  3A8K A;  4P5A A;  4OIO A;  1XPP A;  3K7A K;  1TWA K;  3GSI A;  2A69 A;  3GTJ K;  4C2M K;  3GTO K;  4G7H A;  5M5X K;  2WAQ L;  3M3Y C;  4C45 A;  2GAH C;  2GSO A;  3TFH A;  3GTM K;  5TMC A;  1SFO C;  2WAQ D;  4A93 K;  4GTL A;  2NVQ K;  1DCO A;  3T01 A;  4KDD A;  3GTQ A;  4G7Z A;  4X6A K;  3HXA A;  5FJ8 K;  4OIR A;  2JA7 A;  1G51 A;  3S17 C;  1RU0 A;  4Q4Z A;  3G4C A;  2CW0 A;  3BP8 C;  3PO3 C;  1YNJ A;  4A3L K;  1WIH A;  4LR2 A;  2NVT C;  1I50 C;  3AD8 C;  3HOV C;  3K7A C;  1IL2 A;  5FLM K;  1TWA C;  3ERE D;  1EFW A;  1O2B A;  4C2M C;  3GTP K;  1O26 A;  3GTM C;  4YFN A;  1VRQ C;  3HKZ D;  4A93 C;  1TWH K;  3OEP A;  1Y1W K;  3S2D C;  1IBA A;  2NVQ C;  4G7O A;  2V6U A;  1TWC A;  2VUM K;  4A3B K;  3CQZ A;  4DDQ A;  5IP9 K;  5M3F K;  4A3I K;  4Y52 K;  1O24 A;  2V6T A;  4XLN A;  3HOX K;  1BS2 A;  1WSV A;  1Y1V C;  4A3L C;  3AH5 A;  3FHZ A;  2R92 C;  3S1R C;  1C0A A;  3AD7 C;  4LLG A;  5CJ9 A;  1ISE A;  2ZUE A;  2YU9 A;  5FLM C;  4RMF A;  1WOR A;  4KMA A;  1WCM A;  1J6X A;  4KAW X;  3H0G A;  1TWH C;  4YG2 A;  1WSR A;  2PA8 L;  1Y1W C;  2NVY C;  1EI6 A;  2P5M A;  4A3E K;  3GEI A;  1TWF A;  2PA8 D;  4WJ3 M;  4A3B C;  1O28 A;  5IP9 C;  2JA6 K;  4GTC A;  4A3I C;  4Y52 C;  3HOX C;  1J6W A;  3RZD C;  1PJ5 A;  4Y7N K;  1WOO A;  4A3J K;  3GTK A;  2KWA A;  4A3G K;  5IYB K;  5M5W K;  3RZO K;  4NOI A;  1I6H K;  1YCL A;  4GTD A;  4O2D A;  2JA5 A;  2B63 A;  1J98 A;  1ZQ1 C;  5IOT A;  4OIN A;  2NVX K;  4KAS A;  1J6V A;  3S16 K;  3SZY A;  2W7V A;  1ZBS A;  3NUH A;  2Y3P A;  4A3E C;  4YFK A;  3MML B;  3H3V L;  3ADA C;  2XCR B;  1DCP A;  4GT9 A;  3I4N K;  1XXB A;  1O2A A;  4BY7 C;  3H3V D;  3ORE A;  2JA6 C;  4GTE A;  4MEY A;  1EQR A;  1WQF A;  4Y7N C;  4A3C K;  4A3J C;  2PHC B;  5C4J K;  4Q5S A;  4A3G C;  1VGX A;  5IYB C;  3RZO C;  3CQZ K;  4LK1 A;  3S0X A;  1I6H C;  4LOW A;  5TJ3 A;  4WJ4 A;  4PAB A;  4J3N A;  5IOQ A;  1XXA A;  2NVX C;  3V4G A;  1TWG C;  1F9N A;  3S16 C;  4GZY A;  3GIR A;  3A8J A;  1WOS A;  3S14 K;  1SFO A;  1K83 A;  1IS1 A;  3I4N C;  1B4A A;  3HOU K;  4LK0 A;  1ZXO A;  3GTJ C;  2O5I A;  3GTO C;  1WCM K;  3HKZ L;  1ZVU A;  3H0G K;  3BP3 A;  2R7Z A;  3FOE A;  4A3C C;  3AD9 C;  4PAA A;  3HOZ K;  2XCO A;  5C4J C;  1TWF K;  5IYC K;  4KM8 A;  2E2H A;  1WQH A;  3CQZ C;  3N0B A;  3S1M K;  3LAJ A;  4X6A C;  4KN7 A;  4FM9 A;  1I50 A;  4KN4 A;  1WOP A;  2EBB A;  4G0V A;  3QX3 A;  1TWA A;  1BGW A;  4KB2 A;  3S14 C;  1VLO A;  3GTM A;  2Y0S D;  3S1Q K;  3T02 A;  2JA5 K;  1O27 A;  2B63 K;  1KQ4 A;  2PMZ D;  3HOU C;  3GTG A;  1WCM C;  3GTP C;  1INN A;  3H0G C;  4LQY A;  3OPF A;  4BLA A;  2O5J A;  1HQM A;  4BBS K;  1JQW A;  5IYC C;  1Y1V A;  4XSX A;  5C44 K;  5IOS A;  1ZYR A;  2VUM C;  2R92 A;  4AYB D;  4BLB A;  1O29 A;  3FKI A;  2R93 A;  4A3K K;  5M5Y K;  4BBR K;  2ZUF A;  1BDF A;  4A3M K;  3GTQ K;  3S1N K;  3S1Q C;  1TWH A;  4XLP A;  2JA5 C;  2NVY A;  2JA7 K;  5IOR A;  5E68 A;  2GSN A;  4AH6 A;  1PJ7 A;  4XSZ A;  4KAT A;  4C3I K;  3DXJ A;  3L4J A;  2E2I A;  3HOY K;  2A68 A;  1R9T A;  2FQO A;  4JK1 A;  1K83 K;  4BBS C;  4GFQ A;  3TFJ A;  3GTL A;  4M1X A;  1WQG A;  3AQO A;  3JST A;  4WIL A;  2XCQ A;  5HL8 A;  1YX2 A;  3CAG A;  3G4A A;  2R7Z K;  4BBR C;  1JVI A;  2E2H K;  4A3D K;  4A3M C;  1I3Q A;  3GTQ C;  2FQT A;  4QIW D;  1TWC K;  3S1N C;  3EQL A;  3S15 K;  3HOV K;  5JVO A;  2JA7 C;  4BY1 K;  1EH1 A;  1USO A;  4C3I C;  1V5V A;  1O25 A;  1PJ6 A;  3N3Y A;  1IQ0 A;  2JA6 A;  4KAR A;  2BE5 A;  3HOY C;  4KMU A;  4GTF A;  5TMF A;  3SZZ A;  5IYD K;  1K83 C;  1UV7 A;  2PPB A;  3S2D K;  3AQP A; 
#chains in the Genus database with same CATH homology
 1J6X A;  1JQW A;  4XCH A;  1J98 A;  1JVI A;  1VH2 A;  5E68 A;  1VJE A;  1J6V A;  1IE0 A;  1JOE A;  1YCL A;  1VGX A;  2FQO A;  1INN A;  1J6W A;  2FQT A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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