1J98A

The 1.2 angstrom structure of bacillus subtilis luxs
Total Genus 45
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
45
sequence length
154
structure length
153
Chain Sequence
VESFELDHNAVVAPYVRHCGVHKVGTDGVVNKFDIRFCQPNKQAMKPDTIHTLEHLLAFTIRSHAEKYDHFDIIDISPMGQTGYYLVVSGETTSAEIVDLLEDTMKEAVEITEIPAANEKQCGQAKLHDLEGAKRLMRFWLSQDKEELLKVFG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Signaling protein
source organism Bacillus subtilis
publication title The 1.2 A Structure of a Novel Quorum-Sensing Protein, Bacillus subtilis LuxS
pubmed doi rcsb
molecule keywords AUTOINDUCER-2 PRODUCTION PROTEIN LUXS
total genus 45
structure length 153
sequence length 154
ec nomenclature ec 4.4.1.21: S-ribosylhomocysteine lyase.
pdb deposition date 2001-05-24

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02664 LuxS S-Ribosylhomocysteinase (LuxS)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1360.80 Alpha Beta 2-Layer Sandwich Gyrase A; domain 2 S-ribosylhomocysteinase (LuxS) 1j98A00
1INNA 5E68A 1IE0A 2FQTA 4XCHA 1VJEA 1J6WA 2FQOA 1J98A 1VH2A 1JVIA 1JOEA 1J6VA 1VGXA 1JQWA 1YCLA 1J6XA
chains in the Genus database with same CATH superfamily
4LK0A 2PHCB 3GTGK 3I4MC 3PO2C 1Y1WK 1WQGA 3LAPA 1WOOA 3GTLC 4WJ3M 1ZQ1C 3S15K 1PJ7A 4Y52C 2VUMK 5FJ8K 3H3VL 4BBSK 2XCQA 3S17C 4C45A 1O25A 2V6UA 4MQ9A 4G0VA 1DCOA 3GEIA 3S2DC 2Y3PA 1J98A 1ZXOA 3A8JA 1O24A 5HL8A 3H0GA 3HOYK 4G7OA 4GTDA 3GTQK 1IQ0A 4OINA 5IP9K 3GTKC 4O2DA 4A3CC 1EI6A 4BKWA 3GEHA 3L4KA 3AH5A 1PJ6A 3HOUK 3S14K 3H0GK 5IYDC 4LQYA 4FZBA 2GSOA 4LK1A 2E2HC 1USMA 3RZOC 1JOEA 2WB1L 2FQOA 1B4AA 3AD8C 3T01A 2ZUFA 3PO3K 1DCPA 5CHPA 4GFQA 4AYBL 1R9TA 3HOWC 1F93A 1IS1A 1O2AA 3IPJA 4A93K 3M3YC 4A3JK 5TMCA 4XLNA 4X6AK 1JVIA 3DXJA 4KMAA 4OIOA 1HI9A 1R9TK 2NVXA 3S16K 2NVYA 4G7HA 3I4NC 2CW0A 4C3JC 1WQFA 4A3KK 3A8IA 2YU9A 5IORA 3S1QC 4GTFA 1C0AA 2JA7A 4GTAA 3GTOA 5D4DA 4GT9A 3S0XA 2JH3A 4A3GK 4BY7C 2NVYK 1I3QC 1IW7A 1IE0A 3Q3QA 5EGEA 2YU9K 4C3HK 3FOFA 2JA7K 5E68A 2NVTC 1TWAA 1SFOA 4M1XA 3GTOK 2ZUEA 5C4XC 2A69A 1HQMA 3S2HC 2Y0SL 1ZYRA 2R93C 2A6EA 2GSUA 4KMUA 1EQRA 4A3FC 4A3LC 3HOXK 1XZQB 3RZDC 4C3IC 1I6HC 4FM9A 4KB2A 1TWAK 3GTMC 4KARA 1TWCA 5M3FK 2BE5A 3FKIK 2PA8D 5M5WK 3HKZD 2O5JA 3TFJA 4BLBA 2GAHC 5C3EK 4Y7NC 3TTGA 3N0CA 2E2JK 3QX3A 1TWGC 3S1RC 1TWHA 1TWCK 3GDZA 1F7UA 3BUEA 1YX2A 3M4OC 4MEYA 3VA7A 2JA6C 4QIWD 3ERED 1EH1A 2E2IA 4LOWA 1BGWA 4YG2A 3S17K 4A3EC 1WOPA 5M5YK 4A3BC 3GTKA 4LLGA 4A3DC 1RU0A 4BY1K 1TWHK 1TWFC 3GTJA 1ZBSA 3GIRA 4MEXA 1USOA 2E2IK 4OIRA 5M5XK 2RGRA 4KATA 3GTKK 4GZYA 2E2HA 1EK8A 1V5VA 2V6TA 1I50C 5FLMC 5IOSA 1Y1VC 3GTJK 2A6HA 3HOVC 2A68A 5JVOA 5IYDK 3A8KA 2R92C 4XCHA 3T00A 3GTPC 2E2HK 4Q5SA 2WAQD 3RZOK 3S1MC 2O5IA 1Y1WC 4XSZA 4BXXC 1XPPA 4P5BA 1VJEA 1WQHA 3MMLB 4XSXA 3ADAC 5IOQA 3S15C 3M3YK 3AQPA 2VUMC 1I6VA 1XXAA 1SMYA 1IBAA 3OPFA 3K7AC 4KASA 3HOZC 1IL2A 2R7ZA 4WJ4A 5TMFA 3I4NK 4P5AA 3HOYC 5IP7K 2JA8K 2P8TA 3GTQC 2V6SA 5IYCC 5IP9C 1B4BA 2R7ZK 2CFAA 4BY7K 4NOIA 3S14C 2XCOA 4BBRK 4LR2A 1J6XA 5C4JK 1GE9A 3GSIA 3CQZC 2PMZL 2NVTK 3JSTA 1O2FB 3GTMA 3HKZL 4WILA 3GEEA 2NVXK 3S2HK 4GTCA 3CAGA 1INNA 5IYBC 4A3LK 4C3IK 1I6HK 3G4CA 2NVQC 3GTMK 1TWGA 1K83A 4A93C 4PABA 2JA5A 4LJZA 2JA6A 3WODA 1BJTA 4X6AC 3EQLA 1UV7A 2WB1D 3TFHA 4Y7NK 1F7VA 1BS2A 2XCRB 5TJ3A 5IOTA 1PJ5A 3FHZA 3GTLA 5C44K 1TWGK 4AYBD 1SFOK 1K83K 1TWFA 2JA5K 2JA6K 3TFIA 3PO2K 3I4MK 4A3EK 1L0WA 2GAGC 1YNNA 4RMFA 2ZFZA 1I50A 1G51A 1XZPA 3AD9C 3GTLK 4A3GC 2NVYC 4AH6A 1WOSA 1TWFK 1O29A 1Y1VA 4A3MC 2B63C 4YFKA 4Y52K 4G0WA 2YU9C 4C3HC 1VGXA 1BDFA 2FQTA 1O26A 3S2DK 1I50K 4KN4A 1JQWA 1Y1VK 1VLOA 3HOVK 3HOXC 1Y1WA 3BP8C 4A3IC 3G4AA 3FKIC 4A3CK 3SZYA 3NUHA 4KN7A 5C3EC 2Y0SD 4BXXK 4C2MC 2EBBA 4QJVA 2E2JC 2PPBA 3S1NC 4YFNA 3SZZA 1TWCC 1WCMC 1X31C 5EGHA 3FOEA 3GTQA 3GTGC 1VH2A 3K7AK 3HOZK 4KM9A 3LAJA 1J6WA 3HOWK 4BY1C 2KWAA 2P5MA 1TWHC 1VRQC 4OIPA 4GTBA 3CQZA 2E2IC 4BBSC 5IYCK 3OREA 3HXAA 4GTEA 5JFEA 1ISEA 4OIQA 1I3QA 3GTJC 1ZVUA 2CFAB 4C3JK 1WIHA 4KM8A 4KC6A 1KQ4A 3CQZK 4G7ZA 3S1QK 3H3VD 4KDDA 4GTLA 3N0BA 3OEPA 4BLAA 1DD5A 4ILDA 1I3QK 5IYBK 3HOUC 2R93A 3H0GC 4JK1A 1J6VA 1O28A 2NVQK 4J3NA 2PA8L 1YNJA 2GSNA 4G0UA 5C4XK 2R93K 3AQOA 1WORA 4A3FK 3N3YA 3PO3C 3RZDK 3T02A 4QIWL 2B63A 5IP7C 3LPXA 2JA8C 4A3JC 1O2BA 1F9NA 4DDQA 2R7ZC 1R9TC 1XXCA 4XLPA 3BP3A 3S16C 3S1RK 1XZPB 4BBRC 2RH6A 4A3MK 2B63K 1AB4A 3M4OK 4A3KC 5C4JC 2D6FC 4KMDA 4A3BK 4A3DK 3AD7C 3FKIA 1EFWA 2NVXC 4KMHA 3V4GA 4ZH4A 4YFXA 1WSVA 4Q4ZA 1XXBA 4A3IK 4KAWX 2JA7C 2WAQL 4KB4A 1WSRA 1YCLA 2R92A 4PAAA 3GTPA 3L4JA 3GTOC 1WCMA 2PMZD 5L46A 5CJ9A 3GTGA 5FLMK 1XZQA 4C2MK 2W7VA 3S1NK 5C44C 2R92K 1TWAC 4QJVB 1SFOC 3GTPK 1K83C 5M3MK 1O27A 1WCMK 2JA5C 3S1MK 4P9SA 2VUMA 1DCHA
chains in the Genus database with same CATH topology
1INNA 5E68A 1IE0A 2FQTA 4XCHA 1VJEA 1J6WA 2FQOA 1J98A 1VH2A 1JVIA 1JOEA 1J6VA 1VGXA 1JQWA 1YCLA 1J6XA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1INN A;  5E68 A;  1IE0 A;  2FQT A;  4XCH A;  1VJE A;  1J6W A;  2FQO A;  1J98 A;  1VH2 A;  1JVI A;  1JOE A;  1J6V A;  1VGX A;  1JQW A;  1YCL A;  1J6X A; 
#chains in the Genus database with same CATH topology
 4LK0 A;  2PHC B;  3GTG K;  3I4M C;  3PO2 C;  1Y1W K;  1WQG A;  3LAP A;  1WOO A;  3GTL C;  4WJ3 M;  1ZQ1 C;  3S15 K;  1PJ7 A;  4Y52 C;  2VUM K;  5FJ8 K;  3H3V L;  4BBS K;  2XCQ A;  3S17 C;  4C45 A;  1O25 A;  2V6U A;  4MQ9 A;  4G0V A;  1DCO A;  3GEI A;  3S2D C;  2Y3P A;  1J98 A;  1ZXO A;  3A8J A;  1O24 A;  5HL8 A;  3H0G A;  3HOY K;  4G7O A;  4GTD A;  3GTQ K;  1IQ0 A;  4OIN A;  5IP9 K;  3GTK C;  4O2D A;  4A3C C;  1EI6 A;  4BKW A;  3GEH A;  3L4K A;  3AH5 A;  1PJ6 A;  3HOU K;  3S14 K;  3H0G K;  5IYD C;  4LQY A;  4FZB A;  2GSO A;  4LK1 A;  2E2H C;  1USM A;  3RZO C;  1JOE A;  2WB1 L;  2FQO A;  1B4A A;  3AD8 C;  3T01 A;  2ZUF A;  3PO3 K;  1DCP A;  5CHP A;  4GFQ A;  4AYB L;  1R9T A;  3HOW C;  1F93 A;  1IS1 A;  1O2A A;  3IPJ A;  4A93 K;  3M3Y C;  4A3J K;  5TMC A;  4XLN A;  4X6A K;  1JVI A;  3DXJ A;  4KMA A;  4OIO A;  1HI9 A;  1R9T K;  2NVX A;  3S16 K;  2NVY A;  4G7H A;  3I4N C;  2CW0 A;  4C3J C;  1WQF A;  4A3K K;  3A8I A;  2YU9 A;  5IOR A;  3S1Q C;  4GTF A;  1C0A A;  2JA7 A;  4GTA A;  3GTO A;  5D4D A;  4GT9 A;  3S0X A;  2JH3 A;  4A3G K;  4BY7 C;  2NVY K;  1I3Q C;  1IW7 A;  1IE0 A;  3Q3Q A;  5EGE A;  2YU9 K;  4C3H K;  3FOF A;  2JA7 K;  5E68 A;  2NVT C;  1TWA A;  1SFO A;  4M1X A;  3GTO K;  2ZUE A;  5C4X C;  2A69 A;  1HQM A;  3S2H C;  2Y0S L;  1ZYR A;  2R93 C;  2A6E A;  2GSU A;  4KMU A;  1EQR A;  4A3F C;  4A3L C;  3HOX K;  1XZQ B;  3RZD C;  4C3I C;  1I6H C;  4FM9 A;  4KB2 A;  1TWA K;  3GTM C;  4KAR A;  1TWC A;  5M3F K;  2BE5 A;  3FKI K;  2PA8 D;  5M5W K;  3HKZ D;  2O5J A;  3TFJ A;  4BLB A;  2GAH C;  5C3E K;  4Y7N C;  3TTG A;  3N0C A;  2E2J K;  3QX3 A;  1TWG C;  3S1R C;  1TWH A;  1TWC K;  3GDZ A;  1F7U A;  3BUE A;  1YX2 A;  3M4O C;  4MEY A;  3VA7 A;  2JA6 C;  4QIW D;  3ERE D;  1EH1 A;  2E2I A;  4LOW A;  1BGW A;  4YG2 A;  3S17 K;  4A3E C;  1WOP A;  5M5Y K;  4A3B C;  3GTK A;  4LLG A;  4A3D C;  1RU0 A;  4BY1 K;  1TWH K;  1TWF C;  3GTJ A;  1ZBS A;  3GIR A;  4MEX A;  1USO A;  2E2I K;  4OIR A;  5M5X K;  2RGR A;  4KAT A;  3GTK K;  4GZY A;  2E2H A;  1EK8 A;  1V5V A;  2V6T A;  1I50 C;  5FLM C;  5IOS A;  1Y1V C;  3GTJ K;  2A6H A;  3HOV C;  2A68 A;  5JVO A;  5IYD K;  3A8K A;  2R92 C;  4XCH A;  3T00 A;  3GTP C;  2E2H K;  4Q5S A;  2WAQ D;  3RZO K;  3S1M C;  2O5I A;  1Y1W C;  4XSZ A;  4BXX C;  1XPP A;  4P5B A;  1VJE A;  1WQH A;  3MML B;  4XSX A;  3ADA C;  5IOQ A;  3S15 C;  3M3Y K;  3AQP A;  2VUM C;  1I6V A;  1XXA A;  1SMY A;  1IBA A;  3OPF A;  3K7A C;  4KAS A;  3HOZ C;  1IL2 A;  2R7Z A;  4WJ4 A;  5TMF A;  3I4N K;  4P5A A;  3HOY C;  5IP7 K;  2JA8 K;  2P8T A;  3GTQ C;  2V6S A;  5IYC C;  5IP9 C;  1B4B A;  2R7Z K;  2CFA A;  4BY7 K;  4NOI A;  3S14 C;  2XCO A;  4BBR K;  4LR2 A;  1J6X A;  5C4J K;  1GE9 A;  3GSI A;  3CQZ C;  2PMZ L;  2NVT K;  3JST A;  1O2F B;  3GTM A;  3HKZ L;  4WIL A;  3GEE A;  2NVX K;  3S2H K;  4GTC A;  3CAG A;  1INN A;  5IYB C;  4A3L K;  4C3I K;  1I6H K;  3G4C A;  2NVQ C;  3GTM K;  1TWG A;  1K83 A;  4A93 C;  4PAB A;  2JA5 A;  4LJZ A;  2JA6 A;  3WOD A;  1BJT A;  4X6A C;  3EQL A;  1UV7 A;  2WB1 D;  3TFH A;  4Y7N K;  1F7V A;  1BS2 A;  2XCR B;  5TJ3 A;  5IOT A;  1PJ5 A;  3FHZ A;  3GTL A;  5C44 K;  1TWG K;  4AYB D;  1SFO K;  1K83 K;  1TWF A;  2JA5 K;  2JA6 K;  3TFI A;  3PO2 K;  3I4M K;  4A3E K;  1L0W A;  2GAG C;  1YNN A;  4RMF A;  2ZFZ A;  1I50 A;  1G51 A;  1XZP A;  3AD9 C;  3GTL K;  4A3G C;  2NVY C;  4AH6 A;  1WOS A;  1TWF K;  1O29 A;  1Y1V A;  4A3M C;  2B63 C;  4YFK A;  4Y52 K;  4G0W A;  2YU9 C;  4C3H C;  1VGX A;  1BDF A;  2FQT A;  1O26 A;  3S2D K;  1I50 K;  4KN4 A;  1JQW A;  1Y1V K;  1VLO A;  3HOV K;  3HOX C;  1Y1W A;  3BP8 C;  4A3I C;  3G4A A;  3FKI C;  4A3C K;  3SZY A;  3NUH A;  4KN7 A;  5C3E C;  2Y0S D;  4BXX K;  4C2M C;  2EBB A;  4QJV A;  2E2J C;  2PPB A;  3S1N C;  4YFN A;  3SZZ A;  1TWC C;  1WCM C;  1X31 C;  5EGH A;  3FOE A;  3GTQ A;  3GTG C;  1VH2 A;  3K7A K;  3HOZ K;  4KM9 A;  3LAJ A;  1J6W A;  3HOW K;  4BY1 C;  2KWA A;  2P5M A;  1TWH C;  1VRQ C;  4OIP A;  4GTB A;  3CQZ A;  2E2I C;  4BBS C;  5IYC K;  3ORE A;  3HXA A;  4GTE A;  5JFE A;  1ISE A;  4OIQ A;  1I3Q A;  3GTJ C;  1ZVU A;  2CFA B;  4C3J K;  1WIH A;  4KM8 A;  4KC6 A;  1KQ4 A;  3CQZ K;  4G7Z A;  3S1Q K;  3H3V D;  4KDD A;  4GTL A;  3N0B A;  3OEP A;  4BLA A;  1DD5 A;  4ILD A;  1I3Q K;  5IYB K;  3HOU C;  2R93 A;  3H0G C;  4JK1 A;  1J6V A;  1O28 A;  2NVQ K;  4J3N A;  2PA8 L;  1YNJ A;  2GSN A;  4G0U A;  5C4X K;  2R93 K;  3AQO A;  1WOR A;  4A3F K;  3N3Y A;  3PO3 C;  3RZD K;  3T02 A;  4QIW L;  2B63 A;  5IP7 C;  3LPX A;  2JA8 C;  4A3J C;  1O2B A;  1F9N A;  4DDQ A;  2R7Z C;  1R9T C;  1XXC A;  4XLP A;  3BP3 A;  3S16 C;  3S1R K;  1XZP B;  4BBR C;  2RH6 A;  4A3M K;  2B63 K;  1AB4 A;  3M4O K;  4A3K C;  5C4J C;  2D6F C;  4KMD A;  4A3B K;  4A3D K;  3AD7 C;  3FKI A;  1EFW A;  2NVX C;  4KMH A;  3V4G A;  4ZH4 A;  4YFX A;  1WSV A;  4Q4Z A;  1XXB A;  4A3I K;  4KAW X;  2JA7 C;  2WAQ L;  4KB4 A;  1WSR A;  1YCL A;  2R92 A;  4PAA A;  3GTP A;  3L4J A;  3GTO C;  1WCM A;  2PMZ D;  5L46 A;  5CJ9 A;  3GTG A;  5FLM K;  1XZQ A;  4C2M K;  2W7V A;  3S1N K;  5C44 C;  2R92 K;  1TWA C;  4QJV B;  1SFO C;  3GTP K;  1K83 C;  5M3M K;  1O27 A;  1WCM K;  2JA5 C;  3S1M K;  4P9S A;  2VUM A;  1DCH A; 
#chains in the Genus database with same CATH homology
 1INN A;  5E68 A;  1IE0 A;  2FQT A;  4XCH A;  1VJE A;  1J6W A;  2FQO A;  1J98 A;  1VH2 A;  1JVI A;  1JOE A;  1J6V A;  1VGX A;  1JQW A;  1YCL A;  1J6X A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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