1J98A

The 1.2 angstrom structure of bacillus subtilis luxs
Total Genus 45
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
45
sequence length
154
structure length
153
Chain Sequence
VESFELDHNAVVAPYVRHCGVHKVGTDGVVNKFDIRFCQPNKQAMKPDTIHTLEHLLAFTIRSHAEKYDHFDIIDISPMGQTGYYLVVSGETTSAEIVDLLEDTMKEAVEITEIPAANEKQCGQAKLHDLEGAKRLMRFWLSQDKEELLKVFG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Signaling protein
molecule keywords AUTOINDUCER-2 PRODUCTION PROTEIN LUXS
publication title The 1.2 A Structure of a Novel Quorum-Sensing Protein, Bacillus subtilis LuxS
pubmed doi rcsb
source organism Bacillus subtilis
total genus 45
structure length 153
sequence length 154
ec nomenclature ec 4.4.1.21: S-ribosylhomocysteine lyase.
pdb deposition date 2001-05-24

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02664 LuxS S-Ribosylhomocysteinase (LuxS)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1360.80 Alpha Beta 2-Layer Sandwich Gyrase A; domain 2 S-ribosylhomocysteinase (LuxS) 1j98A00
2FQTA 1YCLA 1JQWA 5E68A 2FQOA 1J6XA 1J6WA 1IE0A 1INNA 4XCHA 1VH2A 1VJEA 1VGXA 1J6VA 1JOEA 1JVIA 1J98A
chains in the Genus database with same CATH superfamily
3M3YC 3GTPK 4C2MC 3SZZA 4WJ4A 3GTMC 1O27A 4GTEA 4BLAA 3TFIA 3HOUK 2Y0SL 3HOWK 2VUMK 5JFEA 2JA6C 4GTDA 3I4MC 2JA5C 3PO3K 1F9NA 3WODA 2E2IA 2B63K 2R92K 1XZPB 2PPBA 1O2BA 4GTBA 5IYDK 1K83K 4BLBA 2ZUFA 1Y1VC 3GTOC 1TWCC 2P8TA 2JA8C 3TFHA 3K7AC 3CAGA 4LK0A 3FOFA 3GTQC 1TWAK 2P5MA 4LR2A 3T02A 2XCOA 4XSZA 3HOYK 5C4JC 2A68A 2ZFZA 5C44C 4WILA 4Y52C 4KASA 2NVXC 4P5AA 1PJ6A 2ZUEA 1Y1WC 4A3IC 2W7VA 4KAWX 3RZDC 1V5VA 4GTAA 1TWFC 3GTKC 4P9SA 5IOSA 4OIRA 4A3LC 2Y3PA 3S1NC 3PO2C 4BKWA 2NVTC 4X6AC 1XZPA 4BBRK 4G7HA 3S17C 4A3EK 3S2HC 1EK8A 1XZQB 2CFAB 1SFOA 2NVQK 1PJ7A 2JA7C 3I4NC 4WJ3M 5M5XK 3H3VD 4YFNA 1XXAA 4G0VA 2WB1D 1I50C 4QIWD 2GAHC 3GTPC 3AQPA 5IP9C 2PMZL 3RZOK 3S16K 4Q5SA 3H3VL 4KMAA 1JOEA 1L0WA 4LJZA 2BE5A 2V6UA 4GTLA 4QIWL 5E68A 3TFJA 3S1RC 1JVIA 5C4XC 1KQ4A 4KARA 4C3JC 5M3MK 1B4AA 2JH3A 2B63C 5IYDC 1SFOK 1R9TA 1B4BA 3CQZC 3FKIC 4C3HC 4GFQA 3GTLA 4KM8A 1IQ0A 1YX2A 1X31C 4A3JK 2O5IA 5IYBC 3HOZK 3H0GA 4LOWA 4YG2A 4XLPA 1RU0A 1IL2A 1O29A 1INNA 1USOA 3HOXC 3HOYC 4BBSK 3FOEA 5EGHA 1GE9A 3N0CA 1VGXA 4A3CC 1IW7A 1YNJA 3A8IA 5IYCK 1YCLA 4A3MK 3S1MC 4A93K 3ADAC 2E2IC 5EGEA 4QJVA 2E2HC 1WIHA 3S2DK 1R9TK 4BXXK 4BY7K 3L4JA 1WQHA 1WCMA 4OINA 3GTLK 4KB4A 4A3EC 1HQMA 1TWGC 1BJTA 1EH1A 2V6TA 3OPFA 4KMUA 3GTMA 3H0GK 4A3GK 2NVQC 4XLNA 1J6VA 3S14C 2XCQA 1DD5A 2E2JC 4AYBD 2JA6A 2JA5A 3AD8C 3IPJA 1BGWA 2D6FC 2FQOA 1IBAA 1J6WA 2R7ZC 3HOVK 3RZOC 1ZVUA 1DCOA 4PABA 3GTOA 4Y7NC 2GSOA 5TJ3A 3TTGA 1I6VA 1EI6A 3GTJC 5IOQA 3M3YK 3AD9C 1WCMK 3BP3A 4GTCA 3L4KA 3S0XA 3Q3QA 3FHZA 3M4OK 4G0UA 3GTMK 5HL8A 3GSIA 4RMFA 5IORA 4G0WA 1I3QA 2JA6K 4A3BC 1Y1WA 2JA5K 3PO3C 3S15K 1O2AA 1IE0A 1TWFA 3JSTA 1O24A 5FJ8K 4BY1C 4BBSC 2A6HA 2PHCB 5IP7K 3S1QK 3GTOK 2YU9A 2JA8K 1TWHA 3K7AK 2NVYA 5C3EK 2WB1L 4M1XA 4XCHA 5JVOA 3HOUC 1ZXOA 2PA8D 3HOWC 3QX3A 1USMA 4KC6A 4G7ZA 4A3MC 2VUMC 1XXCA 2JA7A 4QJVB 1DCPA 2RH6A 3BUEA 3EQLA 1BDFA 2CW0A 3S2DC 5M5WK 2R92C 1I50A 1K83C 4PAAA 4BY7C 1F7UA 3OEPA 2V6SA 3GDZA 3NUHA 1DCHA 3GTLC 4A3KK 1I3QK 4GTFA 1Y1WK 1I6HK 2RGRA 3H0GC 3RZDK 3HKZD 4J3NA 1TWAC 1TWFK 3GTKK 1F93A 4KDDA 2XCRB 4A3LK 1HI9A 3S1NK 3PO2K 2YU9K 4LLGA 1VRQC 2NVTK 1TWHK 1EFWA 2NVYK 3S2HK 1XXBA 1SMYA 4A3FK 4AH6A 3CQZA 4Q4ZA 3LAPA 3FKIA 2JA7K 3I4NK 4KATA 4A3DK 4C3IK 3LPXA 4YFKA 3N3YA 1O28A 2GSUA 4DDQA 1I50K 3GTGA 1VH2A 5TMFA 4NOIA 1WCMC 2R93A 5IP9K 3AQOA 1WORA 3M4OC 4BBRC 5M5YK 3A8KA 4OIPA 3GEEA 3S1RK 1WSRA 5C4XK 2A69A 3S15C 2GAGC 3LAJA 4C3JK 2O5JA 4ILDA 3T01A 1BS2A 2E2HA 5IP7C 3S1QC 1ZBSA 4MEYA 1Y1VA 1G51A 3CQZK 3FKIK 1O25A 1WOPA 5FLMK 3S16C 3G4AA 4C3HK 1TWCA 3HXAA 3N0BA 5C3EC 1TWGA 4AYBL 3VA7A 5IYBK 3GTGK 2EBBA 3ERED 3GTQA 5TMCA 3HOXK 2R93K 5D4DA 4C2MK 4MEXA 1J98A 4A3CK 1SFOC 1O26A 2R7ZA 5CHPA 2NVXA 4A3KC 1AB4A 3GEIA 1I3QC 1I6HC 3BP8C 3S1MK 4O2DA 4A3JC 3DXJA 5M3FK 3HOZC 3I4MK 2E2IK 4KN7A 2E2HK 3A8JA 3GTKA 1ZYRA 1J6XA 2YU9C 3GTJA 4KMDA 1Y1VK 1TWHC 3GIRA 4FZBA 2NVYC 1TWCK 2FQTA 1TWGK 2A6EA 2KWAA 4A3FC 4GT9A 4MQ9A 2PMZD 3AD7C 5IYCC 1PJ5A 1XPPA 1O2FB 3GTQK 4C45A 3S14K 4A93C 4A3DC 4C3IC 2E2JK 1C0AA 1UV7A 5C4JK 5C44K 4Y52K 2R7ZK 1R9TC 2NVXK 4BXXC 1VJEA 3GTPA 4G7OA 2PA8L 3T00A 2GSNA 3OREA 5IOTA 2WAQD 4KN4A 4Y7NK 1WOSA 4A3IK 1F7VA 4KMHA 1ZQ1C 4A3GC 3MMLB 1WOOA 1WSVA 4XSXA 3AH5A 2VUMA 4ZH4A 3GTJK 3GEHA 5L46A 4GZYA 3G4CA 2WAQL 1YNNA 1IS1A 1VLOA 4X6AK 2R92A 2B63A 5CJ9A 3SZYA 3S17K 3HOVC 1K83A 4OIOA 3HKZL 4JK1A 4KM9A 1ISEA 4YFXA 1WQGA 5FLMC 1XZQA 4LK1A 2CFAA 4KB2A 1WQFA 4A3BK 3GTGC 1JQWA 1EQRA 4LQYA 4OIQA 1TWAA 2Y0SD 4P5BA 3V4GA 2R93C 4BY1K 4FM9A
chains in the Genus database with same CATH topology
2FQTA 1YCLA 1JQWA 5E68A 2FQOA 1J6XA 1J6WA 1IE0A 1INNA 4XCHA 1VH2A 1VJEA 1VGXA 1J6VA 1JOEA 1JVIA 1J98A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2FQT A;  1YCL A;  1JQW A;  5E68 A;  2FQO A;  1J6X A;  1J6W A;  1IE0 A;  1INN A;  4XCH A;  1VH2 A;  1VJE A;  1VGX A;  1J6V A;  1JOE A;  1JVI A;  1J98 A; 
#chains in the Genus database with same CATH topology
 3M3Y C;  3GTP K;  4C2M C;  3SZZ A;  4WJ4 A;  3GTM C;  1O27 A;  4GTE A;  4BLA A;  3TFI A;  3HOU K;  2Y0S L;  3HOW K;  2VUM K;  5JFE A;  2JA6 C;  4GTD A;  3I4M C;  2JA5 C;  3PO3 K;  1F9N A;  3WOD A;  2E2I A;  2B63 K;  2R92 K;  1XZP B;  2PPB A;  1O2B A;  4GTB A;  5IYD K;  1K83 K;  4BLB A;  2ZUF A;  1Y1V C;  3GTO C;  1TWC C;  2P8T A;  2JA8 C;  3TFH A;  3K7A C;  3CAG A;  4LK0 A;  3FOF A;  3GTQ C;  1TWA K;  2P5M A;  4LR2 A;  3T02 A;  2XCO A;  4XSZ A;  3HOY K;  5C4J C;  2A68 A;  2ZFZ A;  5C44 C;  4WIL A;  4Y52 C;  4KAS A;  2NVX C;  4P5A A;  1PJ6 A;  2ZUE A;  1Y1W C;  4A3I C;  2W7V A;  4KAW X;  3RZD C;  1V5V A;  4GTA A;  1TWF C;  3GTK C;  4P9S A;  5IOS A;  4OIR A;  4A3L C;  2Y3P A;  3S1N C;  3PO2 C;  4BKW A;  2NVT C;  4X6A C;  1XZP A;  4BBR K;  4G7H A;  3S17 C;  4A3E K;  3S2H C;  1EK8 A;  1XZQ B;  2CFA B;  1SFO A;  2NVQ K;  1PJ7 A;  2JA7 C;  3I4N C;  4WJ3 M;  5M5X K;  3H3V D;  4YFN A;  1XXA A;  4G0V A;  2WB1 D;  1I50 C;  4QIW D;  2GAH C;  3GTP C;  3AQP A;  5IP9 C;  2PMZ L;  3RZO K;  3S16 K;  4Q5S A;  3H3V L;  4KMA A;  1JOE A;  1L0W A;  4LJZ A;  2BE5 A;  2V6U A;  4GTL A;  4QIW L;  5E68 A;  3TFJ A;  3S1R C;  1JVI A;  5C4X C;  1KQ4 A;  4KAR A;  4C3J C;  5M3M K;  1B4A A;  2JH3 A;  2B63 C;  5IYD C;  1SFO K;  1R9T A;  1B4B A;  3CQZ C;  3FKI C;  4C3H C;  4GFQ A;  3GTL A;  4KM8 A;  1IQ0 A;  1YX2 A;  1X31 C;  4A3J K;  2O5I A;  5IYB C;  3HOZ K;  3H0G A;  4LOW A;  4YG2 A;  4XLP A;  1RU0 A;  1IL2 A;  1O29 A;  1INN A;  1USO A;  3HOX C;  3HOY C;  4BBS K;  3FOE A;  5EGH A;  1GE9 A;  3N0C A;  1VGX A;  4A3C C;  1IW7 A;  1YNJ A;  3A8I A;  5IYC K;  1YCL A;  4A3M K;  3S1M C;  4A93 K;  3ADA C;  2E2I C;  5EGE A;  4QJV A;  2E2H C;  1WIH A;  3S2D K;  1R9T K;  4BXX K;  4BY7 K;  3L4J A;  1WQH A;  1WCM A;  4OIN A;  3GTL K;  4KB4 A;  4A3E C;  1HQM A;  1TWG C;  1BJT A;  1EH1 A;  2V6T A;  3OPF A;  4KMU A;  3GTM A;  3H0G K;  4A3G K;  2NVQ C;  4XLN A;  1J6V A;  3S14 C;  2XCQ A;  1DD5 A;  2E2J C;  4AYB D;  2JA6 A;  2JA5 A;  3AD8 C;  3IPJ A;  1BGW A;  2D6F C;  2FQO A;  1IBA A;  1J6W A;  2R7Z C;  3HOV K;  3RZO C;  1ZVU A;  1DCO A;  4PAB A;  3GTO A;  4Y7N C;  2GSO A;  5TJ3 A;  3TTG A;  1I6V A;  1EI6 A;  3GTJ C;  5IOQ A;  3M3Y K;  3AD9 C;  1WCM K;  3BP3 A;  4GTC A;  3L4K A;  3S0X A;  3Q3Q A;  3FHZ A;  3M4O K;  4G0U A;  3GTM K;  5HL8 A;  3GSI A;  4RMF A;  5IOR A;  4G0W A;  1I3Q A;  2JA6 K;  4A3B C;  1Y1W A;  2JA5 K;  3PO3 C;  3S15 K;  1O2A A;  1IE0 A;  1TWF A;  3JST A;  1O24 A;  5FJ8 K;  4BY1 C;  4BBS C;  2A6H A;  2PHC B;  5IP7 K;  3S1Q K;  3GTO K;  2YU9 A;  2JA8 K;  1TWH A;  3K7A K;  2NVY A;  5C3E K;  2WB1 L;  4M1X A;  4XCH A;  5JVO A;  3HOU C;  1ZXO A;  2PA8 D;  3HOW C;  3QX3 A;  1USM A;  4KC6 A;  4G7Z A;  4A3M C;  2VUM C;  1XXC A;  2JA7 A;  4QJV B;  1DCP A;  2RH6 A;  3BUE A;  3EQL A;  1BDF A;  2CW0 A;  3S2D C;  5M5W K;  2R92 C;  1I50 A;  1K83 C;  4PAA A;  4BY7 C;  1F7U A;  3OEP A;  2V6S A;  3GDZ A;  3NUH A;  1DCH A;  3GTL C;  4A3K K;  1I3Q K;  4GTF A;  1Y1W K;  1I6H K;  2RGR A;  3H0G C;  3RZD K;  3HKZ D;  4J3N A;  1TWA C;  1TWF K;  3GTK K;  1F93 A;  4KDD A;  2XCR B;  4A3L K;  1HI9 A;  3S1N K;  3PO2 K;  2YU9 K;  4LLG A;  1VRQ C;  2NVT K;  1TWH K;  1EFW A;  2NVY K;  3S2H K;  1XXB A;  1SMY A;  4A3F K;  4AH6 A;  3CQZ A;  4Q4Z A;  3LAP A;  3FKI A;  2JA7 K;  3I4N K;  4KAT A;  4A3D K;  4C3I K;  3LPX A;  4YFK A;  3N3Y A;  1O28 A;  2GSU A;  4DDQ A;  1I50 K;  3GTG A;  1VH2 A;  5TMF A;  4NOI A;  1WCM C;  2R93 A;  5IP9 K;  3AQO A;  1WOR A;  3M4O C;  4BBR C;  5M5Y K;  3A8K A;  4OIP A;  3GEE A;  3S1R K;  1WSR A;  5C4X K;  2A69 A;  3S15 C;  2GAG C;  3LAJ A;  4C3J K;  2O5J A;  4ILD A;  3T01 A;  1BS2 A;  2E2H A;  5IP7 C;  3S1Q C;  1ZBS A;  4MEY A;  1Y1V A;  1G51 A;  3CQZ K;  3FKI K;  1O25 A;  1WOP A;  5FLM K;  3S16 C;  3G4A A;  4C3H K;  1TWC A;  3HXA A;  3N0B A;  5C3E C;  1TWG A;  4AYB L;  3VA7 A;  5IYB K;  3GTG K;  2EBB A;  3ERE D;  3GTQ A;  5TMC A;  3HOX K;  2R93 K;  5D4D A;  4C2M K;  4MEX A;  1J98 A;  4A3C K;  1SFO C;  1O26 A;  2R7Z A;  5CHP A;  2NVX A;  4A3K C;  1AB4 A;  3GEI A;  1I3Q C;  1I6H C;  3BP8 C;  3S1M K;  4O2D A;  4A3J C;  3DXJ A;  5M3F K;  3HOZ C;  3I4M K;  2E2I K;  4KN7 A;  2E2H K;  3A8J A;  3GTK A;  1ZYR A;  1J6X A;  2YU9 C;  3GTJ A;  4KMD A;  1Y1V K;  1TWH C;  3GIR A;  4FZB A;  2NVY C;  1TWC K;  2FQT A;  1TWG K;  2A6E A;  2KWA A;  4A3F C;  4GT9 A;  4MQ9 A;  2PMZ D;  3AD7 C;  5IYC C;  1PJ5 A;  1XPP A;  1O2F B;  3GTQ K;  4C45 A;  3S14 K;  4A93 C;  4A3D C;  4C3I C;  2E2J K;  1C0A A;  1UV7 A;  5C4J K;  5C44 K;  4Y52 K;  2R7Z K;  1R9T C;  2NVX K;  4BXX C;  1VJE A;  3GTP A;  4G7O A;  2PA8 L;  3T00 A;  2GSN A;  3ORE A;  5IOT A;  2WAQ D;  4KN4 A;  4Y7N K;  1WOS A;  4A3I K;  1F7V A;  4KMH A;  1ZQ1 C;  4A3G C;  3MML B;  1WOO A;  1WSV A;  4XSX A;  3AH5 A;  2VUM A;  4ZH4 A;  3GTJ K;  3GEH A;  5L46 A;  4GZY A;  3G4C A;  2WAQ L;  1YNN A;  1IS1 A;  1VLO A;  4X6A K;  2R92 A;  2B63 A;  5CJ9 A;  3SZY A;  3S17 K;  3HOV C;  1K83 A;  4OIO A;  3HKZ L;  4JK1 A;  4KM9 A;  1ISE A;  4YFX A;  1WQG A;  5FLM C;  1XZQ A;  4LK1 A;  2CFA A;  4KB2 A;  1WQF A;  4A3B K;  3GTG C;  1JQW A;  1EQR A;  4LQY A;  4OIQ A;  1TWA A;  2Y0S D;  4P5B A;  3V4G A;  2R93 C;  4BY1 K;  4FM9 A; 
#chains in the Genus database with same CATH homology
 2FQT A;  1YCL A;  1JQW A;  5E68 A;  2FQO A;  1J6X A;  1J6W A;  1IE0 A;  1INN A;  4XCH A;  1VH2 A;  1VJE A;  1VGX A;  1J6V A;  1JOE A;  1JVI A;  1J98 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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