1J98A

The 1.2 angstrom structure of bacillus subtilis luxs
Total Genus 45
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
45
sequence length
154
structure length
153
Chain Sequence
VESFELDHNAVVAPYVRHCGVHKVGTDGVVNKFDIRFCQPNKQAMKPDTIHTLEHLLAFTIRSHAEKYDHFDIIDISPMGQTGYYLVVSGETTSAEIVDLLEDTMKEAVEITEIPAANEKQCGQAKLHDLEGAKRLMRFWLSQDKEELLKVFG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title The 1.2 A Structure of a Novel Quorum-Sensing Protein, Bacillus subtilis LuxS
pubmed doi rcsb
molecule tags Signaling protein
source organism Bacillus subtilis
molecule keywords AUTOINDUCER-2 PRODUCTION PROTEIN LUXS
total genus 45
structure length 153
sequence length 154
ec nomenclature ec 4.4.1.21: S-ribosylhomocysteine lyase.
pdb deposition date 2001-05-24

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02664 LuxS S-Ribosylhomocysteinase (LuxS)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1360.80 Alpha Beta 2-Layer Sandwich Gyrase A; domain 2 S-ribosylhomocysteinase (LuxS) 1j98A00
1J6WA 1YCLA 1J6XA 1J98A 1J6VA 2FQOA 1INNA 2FQTA 4XCHA 1JOEA 1JQWA 1VH2A 1JVIA 1VGXA 1IE0A 5E68A 1VJEA
chains in the Genus database with same CATH superfamily
3M4OC 3SZYA 1DCHA 4KM8A 4AH6A 4C3JC 2NVYA 3AQPA 3AD9C 2GAGC 4C2MC 1INNA 4QIWL 1VLOA 3GIRA 2B63C 5CJ9A 3N3YA 2PA8D 3T02A 4KN7A 2E2HA 1XZQB 1IW7A 5IYCK 3FOEA 3OEPA 4XSXA 2R92A 3FKIK 2JA5C 1HQMA 2RH6A 4BLAA 3GTGC 4Y7NK 5FLMC 5TJ3A 1TWHA 2W7VA 5IP9C 3A8IA 4G7ZA 3GTJC 3S1QK 3M4OK 4LK0A 3GTMC 4C3JK 3K7AC 3IPJA 2B63K 4GTAA 5EGHA 1TWGA 2RGRA 1DCOA 2NVXA 1Y1VC 1B4BA 1BJTA 1O28A 3GEEA 4P5BA 2FQOA 3GTGK 3GTPC 5FLMK 2R7ZC 4BXXC 4X6AK 1UV7A 4LJZA 4P9SA 5IP9K 2E2IA 1IS1A 5IP7K 1SFOA 3GTMK 1VRQC 3GTQC 4A3EK 3K7AK 1F9NA 4C3HC 4XSZA 3S17K 4GTBA 3GEIA 4BY1C 1VH2A 1X31C 3CQZA 1TWAC 5C4XC 5TMCA 2D6FC 4QJVA 5IORA 1XZPA 1G51A 3M3YK 1WQGA 4BY7C 2GSOA 4A3CC 1ZYRA 4BKWA 3BP3A 4GTDA 4OIOA 4A3IK 2Y3PA 3OPFA 3DXJA 1I6HC 3I4MC 1XZQA 4GT9A 4PAAA 1R9TA 1J98A 3S14C 2ZUEA 4YFKA 1I6VA 4C3HK 2JA8K 3H0GC 4ILDA 1TWAK 5C4XK 4A3JC 2VUMA 3GTOK 5FJ8K 3S2HK 3TFIA 1WCMC 1ZXOA 1IL2A 3FKIA 1I50A 4Y52K 5C44C 3GDZA 3S2DK 4KAWX 4OIPA 1Y1WA 3GTKC 1XXCA 3I4MK 1JOEA 2WAQL 4A3LC 4BLBA 1BDFA 5IOQA 4A3MC 1J6VA 5M5XK 1TWFA 4A3BC 1DD5A 3H0GK 2XCOA 4KMAA 4A3JK 4QJVB 1XZPB 1K83A 4A3KK 1WCMK 2WB1D 3GTLA 5E68A 5C4JC 2E2JC 2JA6C 4GTFA 4NOIA 4YFNA 2PMZL 4BBRC 1PJ7A 3PO2C 4C3IK 4AYBD 4A3MK 2R93K 1BS2A 5C3EC 1O25A 4LLGA 4OIRA 4A3BK 3CAGA 2A6HA 3S16C 4G0UA 1TWCC 3L4KA 1EQRA 4FZBA 1BGWA 3TFJA 2JA7C 2PHCB 5EGEA 3HXAA 2JA6K 5IOSA 2PA8L 4C2MK 3HOXC 3ADAC 3S1MC 2P5MA 4RMFA 4G0WA 2XCRB 2NVYC 4BBRK 1ISEA 4OINA 4KMHA 3PO2K 1EH1A 2JA5K 3HOVC 1XXAA 2E2HC 3GTOA 1EFWA 3S16K 2R92C 1TWCK 2YU9A 1IBAA 3BUEA 4XLPA 3HKZD 3GTJK 3FHZA 2JA7K 3BP8C 1JQWA 1TWHC 2ZFZA 5L46A 4GTLA 1I3QA 4KATA 2CFAB 3HOXK 4M1XA 2Y0SD 3MMLB 1WOPA 4KDDA 1O26A 2NVYK 4A93C 1VGXA 1Y1VK 3PO3C 2P8TA 3RZOC 4WILA 3FOFA 3RZDC 3HOVK 1TWGC 2EBBA 2GAHC 3I4NC 1F93A 3GTPK 4WJ3M 2NVXC 2R7ZK 3S1NC 3LAJA 1YX2A 4BBSC 1WCMA 4BXXK 3S15C 1WIHA 3GTQK 1O2FB 1SMYA 2Y0SL 3HOYC 1TWHK 4BY1K 2E2IC 3AH5A 3AD7C 1SFOC 4BY7K 1J6XA 2XCQA 3QX3A 4A93K 1PJ6A 4A3CK 2BE5A 4YG2A 2R93A 3CQZC 3G4AA 3S1RC 1WOSA 3AD8C 1O2BA 3RZDK 2ZUFA 5IYDC 3T01A 3TTGA 3S1NK 4BBSK 1WORA 1I6HK 1ZVUA 2NVQC 3Q3QA 3VA7A 1XPPA 4MEYA 2JH3A 4OIQA 3S14K 3S0XA 4KMDA 5IYBC 4G7HA 2B63A 3TFHA 2A69A 3OREA 2E2IK 4YFXA 1R9TC 4ZH4A 1SFOK 2CW0A 3HOWC 1YNJA 1USOA 3GSIA 5M3MK 5C44K 1WQHA 2JA5A 1YNNA 3EQLA 4QIWD 2VUMC 3GTGA 2A68A 5JVOA 1B4AA 2CFAA 1IE0A 1HI9A 3GTKK 3JSTA 4P5AA 5CHPA 5IYCC 1I50C 3FKIC 3N0CA 3GTJA 2GSNA 2PPBA 3GTMA 2JA7A 1VJEA 3HOZC 4Y7NC 2NVQK 4A3FC 3HOUC 1Y1WC 4A3LK 4LR2A 1PJ5A 5IYBK 2V6UA 3S1QC 2WB1L 1R9TK 1XXBA 3HOWK 1Y1VA 2NVTC 4KARA 1TWFC 5C4JK 2E2JK 2VUMK 3GTPA 3NUHA 1GE9A 2R7ZA 1K83C 1I50K 3GTLC 3LPXA 3SZZA 5D4DA 4AYBL 3HOZK 4A3FK 3L4JA 1O29A 3GTQA 3HOUK 1Y1WK 4GTCA 4X6AC 1TWAA 5IP7C 5C3EK 1O2AA 1F7VA 1V5VA 4A3EC 2FQTA 5TMFA 3S17C 1EI6A 2NVTK 5JFEA 4MEXA 1J6WA 1TWFK 1WSRA 3M3YC 4DDQA 4FM9A 3V4GA 1K83K 3S1MK 3GTLK 4KB4A 2KWAA 4A3IC 5HL8A 1AB4A 4KMUA 2O5IA 4Q5SA 4KN4A 3H0GA 4LK1A 4Q4ZA 3HKZL 2E2HK 4XLNA 2R92K 2JA8C 4KM9A 5IOTA 4A3DC 1KQ4A 1RU0A 4G0VA 5M3FK 4GTEA 3LAPA 3AQOA 3GTOC 3S2HC 1YCLA 3GTKA 2YU9C 4Y52C 4C45A 4MQ9A 1O27A 4A3GC 4KC6A 3S2DC 3A8KA 4PABA 3PO3K 1I3QC 4O2DA 3RZOK 3WODA 4KB2A 4G7OA 3G4CA 1TWGK 3I4NK 2NVXK 3H3VD 3N0BA 4LOWA 2O5JA 3S15K 1ZBSA 2WAQD 2V6SA 3T00A 4A3DK 4WJ4A 4LQYA 2JA6A 4GZYA 5M5WK 4KASA 1USMA 1F7UA 4A3KC 2YU9K 3HOYK 4GFQA 1DCPA 1IQ0A 4A3GK 1WOOA 5M5YK 1WQFA 1O24A 2GSUA 3GEHA 2V6TA 1EK8A 2A6EA 1L0WA 3A8JA 4J3NA 1I3QK 3ERED 1WSVA 3CQZK 3H3VL 3S1RK 1ZQ1C 5IYDK 1TWCA 2PMZD 4C3IC 1JVIA 4JK1A 2R93C 1C0AA 4XCHA
chains in the Genus database with same CATH topology
1J6WA 1YCLA 1J6XA 1J98A 1J6VA 2FQOA 1INNA 2FQTA 4XCHA 1JOEA 1JQWA 1VH2A 1JVIA 1VGXA 1IE0A 5E68A 1VJEA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1J6W A;  1YCL A;  1J6X A;  1J98 A;  1J6V A;  2FQO A;  1INN A;  2FQT A;  4XCH A;  1JOE A;  1JQW A;  1VH2 A;  1JVI A;  1VGX A;  1IE0 A;  5E68 A;  1VJE A; 
#chains in the Genus database with same CATH topology
 3M4O C;  3SZY A;  1DCH A;  4KM8 A;  4AH6 A;  4C3J C;  2NVY A;  3AQP A;  3AD9 C;  2GAG C;  4C2M C;  1INN A;  4QIW L;  1VLO A;  3GIR A;  2B63 C;  5CJ9 A;  3N3Y A;  2PA8 D;  3T02 A;  4KN7 A;  2E2H A;  1XZQ B;  1IW7 A;  5IYC K;  3FOE A;  3OEP A;  4XSX A;  2R92 A;  3FKI K;  2JA5 C;  1HQM A;  2RH6 A;  4BLA A;  3GTG C;  4Y7N K;  5FLM C;  5TJ3 A;  1TWH A;  2W7V A;  5IP9 C;  3A8I A;  4G7Z A;  3GTJ C;  3S1Q K;  3M4O K;  4LK0 A;  3GTM C;  4C3J K;  3K7A C;  3IPJ A;  2B63 K;  4GTA A;  5EGH A;  1TWG A;  2RGR A;  1DCO A;  2NVX A;  1Y1V C;  1B4B A;  1BJT A;  1O28 A;  3GEE A;  4P5B A;  2FQO A;  3GTG K;  3GTP C;  5FLM K;  2R7Z C;  4BXX C;  4X6A K;  1UV7 A;  4LJZ A;  4P9S A;  5IP9 K;  2E2I A;  1IS1 A;  5IP7 K;  1SFO A;  3GTM K;  1VRQ C;  3GTQ C;  4A3E K;  3K7A K;  1F9N A;  4C3H C;  4XSZ A;  3S17 K;  4GTB A;  3GEI A;  4BY1 C;  1VH2 A;  1X31 C;  3CQZ A;  1TWA C;  5C4X C;  5TMC A;  2D6F C;  4QJV A;  5IOR A;  1XZP A;  1G51 A;  3M3Y K;  1WQG A;  4BY7 C;  2GSO A;  4A3C C;  1ZYR A;  4BKW A;  3BP3 A;  4GTD A;  4OIO A;  4A3I K;  2Y3P A;  3OPF A;  3DXJ A;  1I6H C;  3I4M C;  1XZQ A;  4GT9 A;  4PAA A;  1R9T A;  1J98 A;  3S14 C;  2ZUE A;  4YFK A;  1I6V A;  4C3H K;  2JA8 K;  3H0G C;  4ILD A;  1TWA K;  5C4X K;  4A3J C;  2VUM A;  3GTO K;  5FJ8 K;  3S2H K;  3TFI A;  1WCM C;  1ZXO A;  1IL2 A;  3FKI A;  1I50 A;  4Y52 K;  5C44 C;  3GDZ A;  3S2D K;  4KAW X;  4OIP A;  1Y1W A;  3GTK C;  1XXC A;  3I4M K;  1JOE A;  2WAQ L;  4A3L C;  4BLB A;  1BDF A;  5IOQ A;  4A3M C;  1J6V A;  5M5X K;  1TWF A;  4A3B C;  1DD5 A;  3H0G K;  2XCO A;  4KMA A;  4A3J K;  4QJV B;  1XZP B;  1K83 A;  4A3K K;  1WCM K;  2WB1 D;  3GTL A;  5E68 A;  5C4J C;  2E2J C;  2JA6 C;  4GTF A;  4NOI A;  4YFN A;  2PMZ L;  4BBR C;  1PJ7 A;  3PO2 C;  4C3I K;  4AYB D;  4A3M K;  2R93 K;  1BS2 A;  5C3E C;  1O25 A;  4LLG A;  4OIR A;  4A3B K;  3CAG A;  2A6H A;  3S16 C;  4G0U A;  1TWC C;  3L4K A;  1EQR A;  4FZB A;  1BGW A;  3TFJ A;  2JA7 C;  2PHC B;  5EGE A;  3HXA A;  2JA6 K;  5IOS A;  2PA8 L;  4C2M K;  3HOX C;  3ADA C;  3S1M C;  2P5M A;  4RMF A;  4G0W A;  2XCR B;  2NVY C;  4BBR K;  1ISE A;  4OIN A;  4KMH A;  3PO2 K;  1EH1 A;  2JA5 K;  3HOV C;  1XXA A;  2E2H C;  3GTO A;  1EFW A;  3S16 K;  2R92 C;  1TWC K;  2YU9 A;  1IBA A;  3BUE A;  4XLP A;  3HKZ D;  3GTJ K;  3FHZ A;  2JA7 K;  3BP8 C;  1JQW A;  1TWH C;  2ZFZ A;  5L46 A;  4GTL A;  1I3Q A;  4KAT A;  2CFA B;  3HOX K;  4M1X A;  2Y0S D;  3MML B;  1WOP A;  4KDD A;  1O26 A;  2NVY K;  4A93 C;  1VGX A;  1Y1V K;  3PO3 C;  2P8T A;  3RZO C;  4WIL A;  3FOF A;  3RZD C;  3HOV K;  1TWG C;  2EBB A;  2GAH C;  3I4N C;  1F93 A;  3GTP K;  4WJ3 M;  2NVX C;  2R7Z K;  3S1N C;  3LAJ A;  1YX2 A;  4BBS C;  1WCM A;  4BXX K;  3S15 C;  1WIH A;  3GTQ K;  1O2F B;  1SMY A;  2Y0S L;  3HOY C;  1TWH K;  4BY1 K;  2E2I C;  3AH5 A;  3AD7 C;  1SFO C;  4BY7 K;  1J6X A;  2XCQ A;  3QX3 A;  4A93 K;  1PJ6 A;  4A3C K;  2BE5 A;  4YG2 A;  2R93 A;  3CQZ C;  3G4A A;  3S1R C;  1WOS A;  3AD8 C;  1O2B A;  3RZD K;  2ZUF A;  5IYD C;  3T01 A;  3TTG A;  3S1N K;  4BBS K;  1WOR A;  1I6H K;  1ZVU A;  2NVQ C;  3Q3Q A;  3VA7 A;  1XPP A;  4MEY A;  2JH3 A;  4OIQ A;  3S14 K;  3S0X A;  4KMD A;  5IYB C;  4G7H A;  2B63 A;  3TFH A;  2A69 A;  3ORE A;  2E2I K;  4YFX A;  1R9T C;  4ZH4 A;  1SFO K;  2CW0 A;  3HOW C;  1YNJ A;  1USO A;  3GSI A;  5M3M K;  5C44 K;  1WQH A;  2JA5 A;  1YNN A;  3EQL A;  4QIW D;  2VUM C;  3GTG A;  2A68 A;  5JVO A;  1B4A A;  2CFA A;  1IE0 A;  1HI9 A;  3GTK K;  3JST A;  4P5A A;  5CHP A;  5IYC C;  1I50 C;  3FKI C;  3N0C A;  3GTJ A;  2GSN A;  2PPB A;  3GTM A;  2JA7 A;  1VJE A;  3HOZ C;  4Y7N C;  2NVQ K;  4A3F C;  3HOU C;  1Y1W C;  4A3L K;  4LR2 A;  1PJ5 A;  5IYB K;  2V6U A;  3S1Q C;  2WB1 L;  1R9T K;  1XXB A;  3HOW K;  1Y1V A;  2NVT C;  4KAR A;  1TWF C;  5C4J K;  2E2J K;  2VUM K;  3GTP A;  3NUH A;  1GE9 A;  2R7Z A;  1K83 C;  1I50 K;  3GTL C;  3LPX A;  3SZZ A;  5D4D A;  4AYB L;  3HOZ K;  4A3F K;  3L4J A;  1O29 A;  3GTQ A;  3HOU K;  1Y1W K;  4GTC A;  4X6A C;  1TWA A;  5IP7 C;  5C3E K;  1O2A A;  1F7V A;  1V5V A;  4A3E C;  2FQT A;  5TMF A;  3S17 C;  1EI6 A;  2NVT K;  5JFE A;  4MEX A;  1J6W A;  1TWF K;  1WSR A;  3M3Y C;  4DDQ A;  4FM9 A;  3V4G A;  1K83 K;  3S1M K;  3GTL K;  4KB4 A;  2KWA A;  4A3I C;  5HL8 A;  1AB4 A;  4KMU A;  2O5I A;  4Q5S A;  4KN4 A;  3H0G A;  4LK1 A;  4Q4Z A;  3HKZ L;  2E2H K;  4XLN A;  2R92 K;  2JA8 C;  4KM9 A;  5IOT A;  4A3D C;  1KQ4 A;  1RU0 A;  4G0V A;  5M3F K;  4GTE A;  3LAP A;  3AQO A;  3GTO C;  3S2H C;  1YCL A;  3GTK A;  2YU9 C;  4Y52 C;  4C45 A;  4MQ9 A;  1O27 A;  4A3G C;  4KC6 A;  3S2D C;  3A8K A;  4PAB A;  3PO3 K;  1I3Q C;  4O2D A;  3RZO K;  3WOD A;  4KB2 A;  4G7O A;  3G4C A;  1TWG K;  3I4N K;  2NVX K;  3H3V D;  3N0B A;  4LOW A;  2O5J A;  3S15 K;  1ZBS A;  2WAQ D;  2V6S A;  3T00 A;  4A3D K;  4WJ4 A;  4LQY A;  2JA6 A;  4GZY A;  5M5W K;  4KAS A;  1USM A;  1F7U A;  4A3K C;  2YU9 K;  3HOY K;  4GFQ A;  1DCP A;  1IQ0 A;  4A3G K;  1WOO A;  5M5Y K;  1WQF A;  1O24 A;  2GSU A;  3GEH A;  2V6T A;  1EK8 A;  2A6E A;  1L0W A;  3A8J A;  4J3N A;  1I3Q K;  3ERE D;  1WSV A;  3CQZ K;  3H3V L;  3S1R K;  1ZQ1 C;  5IYD K;  1TWC A;  2PMZ D;  4C3I C;  1JVI A;  4JK1 A;  2R93 C;  1C0A A;  4XCH A; 
#chains in the Genus database with same CATH homology
 1J6W A;  1YCL A;  1J6X A;  1J98 A;  1J6V A;  2FQO A;  1INN A;  2FQT A;  4XCH A;  1JOE A;  1JQW A;  1VH2 A;  1JVI A;  1VGX A;  1IE0 A;  5E68 A;  1VJE A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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