1JD5A

Crystal structure of diap1-bir2/grim
Total Genus 30
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
30
sequence length
105
structure length
105
Chain Sequence
GNYFPQYPEYAIETARLRTFEAWPRNLKQKPHQLAEAGFFYTGVGDRVRCFSCGGGLMDWNDNDEPWEQHALWLSQCRFVKLMKGQLYIDTVAAKPVLAEEKEES
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Hydrolase/peptide
molecule keywords APOPTOSIS 1 INHIBITOR
publication title Structural analysis of a functional DIAP1 fragment bound to grim and hid peptides.
pubmed doi rcsb
source organism Drosophila melanogaster
total genus 30
structure length 105
sequence length 105
ec nomenclature ec 2.3.2.27: RING-type E3 ubiquitin transferase.
pdb deposition date 2001-06-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00653 BIR Inhibitor of Apoptosis domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1170.10 Mainly Alpha Orthogonal Bundle Inhibitor Of Apoptosis Protein (2mihbC-IAP-1); Chain A Inhibitor Of Apoptosis Protein (2mihbC-IAP-1); Chain A 1jd5A00
2QRAA 4EC4A 2QFAA 1E31A 2POIA 3GT9A 3D9TA 3UEGA 3MUPA 2POPB 3UIGA 3UIHA 1F9XA 1M4MA 4KJUA 1TFTA 2VSLA 3CM2A 4LGUA 1XB0A 3HL5A 4J47A 1JD6A 5C7CA 5C3HA 1SDZA 4OXCA 4MTIA 3UW4A 3T6PA 3SIPE 3UIIA 3F7HA 4J45A 4MU7A 1QBHA 1Q4QA 4HY4A 4KJVA 1G73C 4A0NA 3M0AD 3SIQA 3UEIA 1SE0A 4J3YA 4EB9A 3UEFA 4HY0A 4WVUA 1JD4A 3F7GA 4A0IA 1XB1A 1OXNA 3UEEA 1TW6A 1I3OE 2RAWA 1G3FA 4KMNA 5C7AA 3M0DD 3UECA 4HY5A 2UVLA 1OXQA 4WVSA 4J46A 5C7DA 2OPYA 4MTZA 3UIJA 5C3KA 3D9UA 4A0JA 1XOXA 3UIKA 2RAXA 5C84A 2I3IA 1C9QA 1TFQA 2I3HA 5C0LA 3OZ1A 3F7IA 4J48A 3CLXA 3CM7A 3EYLA 1NW9A 4KMPA 4WVTA 2OPZA 5C7BA 1F3HA 5C83A 1JD5A 4J44A 3UEDA 3G76A 2JK7A 3UEHA 1OY7A 3UW5A 3M1DA 4LGEA 2VM5A 5C0KA 3GTAA
chains in the Genus database with same CATH superfamily
2QRAA 4EC4A 2QFAA 1E31A 2POIA 3GT9A 3D9TA 3UEGA 3MUPA 2POPB 3UIGA 3UIHA 1F9XA 1M4MA 4KJUA 1TFTA 2VSLA 3CM2A 4LGUA 1XB0A 3HL5A 4J47A 1JD6A 5C7CA 5C3HA 1SDZA 4OXCA 4MTIA 3UW4A 3T6PA 3SIPE 3UIIA 3F7HA 4J45A 4MU7A 1QBHA 1Q4QA 4HY4A 4KJVA 1G73C 4A0NA 3M0AD 3SIQA 3UEIA 1SE0A 4J3YA 4EB9A 3UEFA 4HY0A 4WVUA 1JD4A 3F7GA 4A0IA 1XB1A 1OXNA 3UEEA 1TW6A 1I3OE 2RAWA 1G3FA 4KMNA 5C7AA 3M0DD 3UECA 4HY5A 2UVLA 1OXQA 4WVSA 4J46A 5C7DA 2OPYA 4MTZA 3UIJA 5C3KA 3D9UA 4A0JA 1XOXA 3UIKA 2RAXA 5C84A 2I3IA 1C9QA 1TFQA 2I3HA 5C0LA 3OZ1A 3F7IA 4J48A 3CLXA 3CM7A 3EYLA 1NW9A 4KMPA 4WVTA 2OPZA 5C7BA 1F3HA 5C83A 1JD5A 4J44A 3UEDA 3G76A 2JK7A 3UEHA 1OY7A 3UW5A 3M1DA 4LGEA 2VM5A 5C0KA 3GTAA
chains in the Genus database with same CATH topology
2QRAA 4EC4A 2QFAA 1E31A 2POIA 3GT9A 3D9TA 3UEGA 3MUPA 2POPB 3UIGA 3UIHA 1F9XA 1M4MA 4KJUA 1TFTA 2VSLA 3CM2A 4LGUA 1XB0A 3HL5A 4J47A 1JD6A 5C7CA 5C3HA 1SDZA 4OXCA 4MTIA 3UW4A 3T6PA 3SIPE 3UIIA 3F7HA 4J45A 4MU7A 1QBHA 1Q4QA 4HY4A 4KJVA 1G73C 4A0NA 3M0AD 3SIQA 3UEIA 1SE0A 4J3YA 4EB9A 3UEFA 4HY0A 4WVUA 1JD4A 3F7GA 4A0IA 1XB1A 1OXNA 3UEEA 1TW6A 1I3OE 2RAWA 1G3FA 4KMNA 5C7AA 3M0DD 3UECA 4HY5A 2UVLA 1OXQA 4WVSA 4J46A 5C7DA 2OPYA 4MTZA 3UIJA 5C3KA 3D9UA 4A0JA 1XOXA 3UIKA 2RAXA 5C84A 2I3IA 1C9QA 1TFQA 2I3HA 5C0LA 3OZ1A 3F7IA 4J48A 3CLXA 3CM7A 3EYLA 1NW9A 4KMPA 4WVTA 2OPZA 5C7BA 1F3HA 5C83A 1JD5A 4J44A 3UEDA 3G76A 2JK7A 3UEHA 1OY7A 3UW5A 3M1DA 4LGEA 2VM5A 5C0KA 3GTAA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2QRA A;  4EC4 A;  2QFA A;  1E31 A;  2POI A;  3GT9 A;  3D9T A;  3UEG A;  3MUP A;  2POP B;  3UIG A;  3UIH A;  1F9X A;  1M4M A;  4KJU A;  1TFT A;  2VSL A;  3CM2 A;  4LGU A;  1XB0 A;  3HL5 A;  4J47 A;  1JD6 A;  5C7C A;  5C3H A;  1SDZ A;  4OXC A;  4MTI A;  3UW4 A;  3T6P A;  3SIP E;  3UII A;  3F7H A;  4J45 A;  4MU7 A;  1QBH A;  1Q4Q A;  4HY4 A;  4KJV A;  1G73 C;  4A0N A;  3M0A D;  3SIQ A;  3UEI A;  1SE0 A;  4J3Y A;  4EB9 A;  3UEF A;  4HY0 A;  4WVU A;  1JD4 A;  3F7G A;  4A0I A;  1XB1 A;  1OXN A;  3UEE A;  1TW6 A;  1I3O E;  2RAW A;  1G3F A;  4KMN A;  5C7A A;  3M0D D;  3UEC A;  4HY5 A;  2UVL A;  1OXQ A;  4WVS A;  4J46 A;  5C7D A;  2OPY A;  4MTZ A;  3UIJ A;  5C3K A;  3D9U A;  4A0J A;  1XOX A;  3UIK A;  2RAX A;  5C84 A;  2I3I A;  1C9Q A;  1TFQ A;  2I3H A;  5C0L A;  3OZ1 A;  3F7I A;  4J48 A;  3CLX A;  3CM7 A;  3EYL A;  1NW9 A;  4KMP A;  4WVT A;  2OPZ A;  5C7B A;  1F3H A;  5C83 A;  1JD5 A;  4J44 A;  3UED A;  3G76 A;  2JK7 A;  3UEH A;  1OY7 A;  3UW5 A;  3M1D A;  4LGE A;  2VM5 A;  5C0K A;  3GTA A; 
#chains in the Genus database with same CATH topology
 2QRA A;  4EC4 A;  2QFA A;  1E31 A;  2POI A;  3GT9 A;  3D9T A;  3UEG A;  3MUP A;  2POP B;  3UIG A;  3UIH A;  1F9X A;  1M4M A;  4KJU A;  1TFT A;  2VSL A;  3CM2 A;  4LGU A;  1XB0 A;  3HL5 A;  4J47 A;  1JD6 A;  5C7C A;  5C3H A;  1SDZ A;  4OXC A;  4MTI A;  3UW4 A;  3T6P A;  3SIP E;  3UII A;  3F7H A;  4J45 A;  4MU7 A;  1QBH A;  1Q4Q A;  4HY4 A;  4KJV A;  1G73 C;  4A0N A;  3M0A D;  3SIQ A;  3UEI A;  1SE0 A;  4J3Y A;  4EB9 A;  3UEF A;  4HY0 A;  4WVU A;  1JD4 A;  3F7G A;  4A0I A;  1XB1 A;  1OXN A;  3UEE A;  1TW6 A;  1I3O E;  2RAW A;  1G3F A;  4KMN A;  5C7A A;  3M0D D;  3UEC A;  4HY5 A;  2UVL A;  1OXQ A;  4WVS A;  4J46 A;  5C7D A;  2OPY A;  4MTZ A;  3UIJ A;  5C3K A;  3D9U A;  4A0J A;  1XOX A;  3UIK A;  2RAX A;  5C84 A;  2I3I A;  1C9Q A;  1TFQ A;  2I3H A;  5C0L A;  3OZ1 A;  3F7I A;  4J48 A;  3CLX A;  3CM7 A;  3EYL A;  1NW9 A;  4KMP A;  4WVT A;  2OPZ A;  5C7B A;  1F3H A;  5C83 A;  1JD5 A;  4J44 A;  3UED A;  3G76 A;  2JK7 A;  3UEH A;  1OY7 A;  3UW5 A;  3M1D A;  4LGE A;  2VM5 A;  5C0K A;  3GTA A; 
#chains in the Genus database with same CATH homology
 2QRA A;  4EC4 A;  2QFA A;  1E31 A;  2POI A;  3GT9 A;  3D9T A;  3UEG A;  3MUP A;  2POP B;  3UIG A;  3UIH A;  1F9X A;  1M4M A;  4KJU A;  1TFT A;  2VSL A;  3CM2 A;  4LGU A;  1XB0 A;  3HL5 A;  4J47 A;  1JD6 A;  5C7C A;  5C3H A;  1SDZ A;  4OXC A;  4MTI A;  3UW4 A;  3T6P A;  3SIP E;  3UII A;  3F7H A;  4J45 A;  4MU7 A;  1QBH A;  1Q4Q A;  4HY4 A;  4KJV A;  1G73 C;  4A0N A;  3M0A D;  3SIQ A;  3UEI A;  1SE0 A;  4J3Y A;  4EB9 A;  3UEF A;  4HY0 A;  4WVU A;  1JD4 A;  3F7G A;  4A0I A;  1XB1 A;  1OXN A;  3UEE A;  1TW6 A;  1I3O E;  2RAW A;  1G3F A;  4KMN A;  5C7A A;  3M0D D;  3UEC A;  4HY5 A;  2UVL A;  1OXQ A;  4WVS A;  4J46 A;  5C7D A;  2OPY A;  4MTZ A;  3UIJ A;  5C3K A;  3D9U A;  4A0J A;  1XOX A;  3UIK A;  2RAX A;  5C84 A;  2I3I A;  1C9Q A;  1TFQ A;  2I3H A;  5C0L A;  3OZ1 A;  3F7I A;  4J48 A;  3CLX A;  3CM7 A;  3EYL A;  1NW9 A;  4KMP A;  4WVT A;  2OPZ A;  5C7B A;  1F3H A;  5C83 A;  1JD5 A;  4J44 A;  3UED A;  3G76 A;  2JK7 A;  3UEH A;  1OY7 A;  3UW5 A;  3M1D A;  4LGE A;  2VM5 A;  5C0K A;  3GTA A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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