1JDWA

Crystal structure and mechanism of l-arginine: glycine amidinotransferase: a mitochondrial enzyme involved in creatine biosynthesis
Total Genus 122
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
122
sequence length
360
structure length
360
Chain Sequence
CPVSSYNEWDPLEEVIVGRAENACVPPFTIEVKANTYEKYWPFYQKQGGHYFPKDHLKKAVAEIEEMCNILKTEGVTVRRPDPIDWSLKYKTPDFESTGLYSAMPRDILIVVGNEIIEAPMAWRSRFFEYRAYRSIIKDYFHRGAKWTTAPKPTMADELYNQDYPIHSVEDRHKLAAQGKFVTTEFEPCFDAADFIRAGRDIFAQRSQVTNYLGIEWMRRHLAPDYRVHIISFKDPNPMHIDATFNIIGPGIVLSNPDRPCHQIDLFKKAGWTIITPPTPIIPDDHPLWMSSKWLSMNVLMLDEKRVMVDANEVPIQKMFEKLGITTIKVNIRNANSLGGGFHCWTCDVRRRGTLQSYLD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
molecule keywords L-ARGININE\:GLYCINE AMIDINOTRANSFERASE
publication title Crystal structure and mechanism of human L-arginine:glycine amidinotransferase: a mitochondrial enzyme involved in creatine biosynthesis.
pubmed doi rcsb
source organism Homo sapiens
total genus 122
structure length 360
sequence length 360
ec nomenclature ec 2.1.4.1: Glycine amidinotransferase.
pdb deposition date 1997-01-22
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.75.10.10 Alpha Beta 5-stranded Propeller L-arginine/glycine Amidinotransferase; Chain A L-arginine/glycine Amidinotransferase; Chain A 1jdwA00
3APMA 4BOFA 4X8GA 2CI5A 1JDXA 1BWDA 4N20A 4X8CA 1RXXA 3P8PA 3I4AA 3P8EA 4N24A 5M3QA 5AK7A 2DW5A 3B1UA 4N2AA 2C6ZA 2ACIA 8JDWA 3H7CX 4N2CA 1XKNA 2Q3UA 2AAFA 4N2HA 4N26A 1JDWA 2JAJA 4N2DA 1ZBRA 1G62A 3RHYA 5AN9I 2CI1A 7JDWA 4YT9A 2ABRA 1S9RA 3I2EA 1LXYA 2DEXX 4YTGA 1WD8A 2DEYX 4N2NA 4N25A 2JDXA 2CI7A 1G61A 4YTBA 2A9GA 2JDWA 4JDWA 4N2FA 9JDWA 1H70A 1WDAA 4E4JA 1WD9A 3HVMA 4N2EA 5HP5A 4N2KA 2CMUA 3B1TA 3H7KA 4N2IA 4N22A 3APNA 2CI4A 1VKPA 4DKTA 2CI3A 2CI6A 2EWOA 4N28A 2JERA 5JDWA 6JDWA 3JDWA 2JAIA 4N2GA 4N2LA 2DEWX 4N2BA 5AK8A 3BPBA 4N2MA
chains in the Genus database with same CATH superfamily
3APMA 4BOFA 4X8GA 2CI5A 1JDXA 1BWDA 4N20A 4X8CA 1RXXA 3P8PA 3I4AA 3P8EA 4N24A 5M3QA 5AK7A 2DW5A 3B1UA 4N2AA 2ACIA 2C6ZA 8JDWA 3H7CX 4N2CA 1XKNA 2Q3UA 2AAFA 4N2HA 4N26A 1JDWA 2JAJA 4N2DA 1ZBRA 1G62A 3RHYA 5AN9I 1YNIA 2CI1A 7JDWA 4YT9A 2ABRA 1S9RA 3I2EA 1YNHA 1LXYA 2DEXX 4YTGA 1WD8A 2DEYX 4N2NA 4N25A 2JDXA 2CI7A 1YNFA 1G61A 4YTBA 2A9GA 2JDWA 4JDWA 4N2FA 9JDWA 1H70A 1WDAA 4E4JA 1WD9A 3HVMA 4N2EA 5HP5A 4N2KA 2CMUA 3B1TA 3H7KA 4N2IA 4N22A 3APNA 2CI4A 1VKPA 4DKTA 2CI3A 2CI6A 2EWOA 4N28A 2JERA 5JDWA 6JDWA 3JDWA 2JAIA 4N2GA 4N2LA 2DEWX 4N2BA 5AK8A 3BPBA 4N2MA
chains in the Genus database with same CATH topology
3APMA 4BOFA 4X8GA 2CI5A 1JDXA 1BWDA 4N20A 4X8CA 1RXXA 3P8PA 3I4AA 3P8EA 4N24A 5M3QA 5AK7A 2DW5A 3B1UA 4N2AA 2C6ZA 2ACIA 8JDWA 3H7CX 4N2CA 1XKNA 2Q3UA 2AAFA 4N2HA 4N26A 1JDWA 2JAJA 4N2DA 1ZBRA 1G62A 3RHYA 5AN9I 2CI1A 7JDWA 4YT9A 2ABRA 1S9RA 3I2EA 1LXYA 2DEXX 4YTGA 1WD8A 2DEYX 4N2NA 4N25A 2JDXA 2CI7A 1G61A 4YTBA 2A9GA 2JDWA 4JDWA 4N2FA 9JDWA 1H70A 1WDAA 4E4JA 1WD9A 3HVMA 4N2EA 5HP5A 4N2KA 2CMUA 3B1TA 3H7KA 4N2IA 4N22A 3APNA 2CI4A 1VKPA 4DKTA 2CI3A 2CI6A 2EWOA 4N28A 2JERA 5JDWA 6JDWA 3JDWA 2JAIA 4N2GA 4N2LA 2DEWX 4N2BA 5AK8A 3BPBA 4N2MA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3APM A;  4BOF A;  4X8G A;  2CI5 A;  1JDX A;  1BWD A;  4N20 A;  4X8C A;  1RXX A;  3P8P A;  3I4A A;  3P8E A;  4N24 A;  5M3Q A;  5AK7 A;  2DW5 A;  3B1U A;  4N2A A;  2C6Z A;  2ACI A;  8JDW A;  3H7C X;  4N2C A;  1XKN A;  2Q3U A;  2AAF A;  4N2H A;  4N26 A;  1JDW A;  2JAJ A;  4N2D A;  1ZBR A;  1G62 A;  3RHY A;  5AN9 I;  2CI1 A;  7JDW A;  4YT9 A;  2ABR A;  1S9R A;  3I2E A;  1LXY A;  2DEX X;  4YTG A;  1WD8 A;  2DEY X;  4N2N A;  4N25 A;  2JDX A;  2CI7 A;  1G61 A;  4YTB A;  2A9G A;  2JDW A;  4JDW A;  4N2F A;  9JDW A;  1H70 A;  1WDA A;  4E4J A;  1WD9 A;  3HVM A;  4N2E A;  5HP5 A;  4N2K A;  2CMU A;  3B1T A;  3H7K A;  4N2I A;  4N22 A;  3APN A;  2CI4 A;  1VKP A;  4DKT A;  2CI3 A;  2CI6 A;  2EWO A;  4N28 A;  2JER A;  5JDW A;  6JDW A;  3JDW A;  2JAI A;  4N2G A;  4N2L A;  2DEW X;  4N2B A;  5AK8 A;  3BPB A;  4N2M A; 
#chains in the Genus database with same CATH topology
 3APM A;  4BOF A;  4X8G A;  2CI5 A;  1JDX A;  1BWD A;  4N20 A;  4X8C A;  1RXX A;  3P8P A;  3I4A A;  3P8E A;  4N24 A;  5M3Q A;  5AK7 A;  2DW5 A;  3B1U A;  4N2A A;  2ACI A;  2C6Z A;  8JDW A;  3H7C X;  4N2C A;  1XKN A;  2Q3U A;  2AAF A;  4N2H A;  4N26 A;  1JDW A;  2JAJ A;  4N2D A;  1ZBR A;  1G62 A;  3RHY A;  5AN9 I;  1YNI A;  2CI1 A;  7JDW A;  4YT9 A;  2ABR A;  1S9R A;  3I2E A;  1YNH A;  1LXY A;  2DEX X;  4YTG A;  1WD8 A;  2DEY X;  4N2N A;  4N25 A;  2JDX A;  2CI7 A;  1YNF A;  1G61 A;  4YTB A;  2A9G A;  2JDW A;  4JDW A;  4N2F A;  9JDW A;  1H70 A;  1WDA A;  4E4J A;  1WD9 A;  3HVM A;  4N2E A;  5HP5 A;  4N2K A;  2CMU A;  3B1T A;  3H7K A;  4N2I A;  4N22 A;  3APN A;  2CI4 A;  1VKP A;  4DKT A;  2CI3 A;  2CI6 A;  2EWO A;  4N28 A;  2JER A;  5JDW A;  6JDW A;  3JDW A;  2JAI A;  4N2G A;  4N2L A;  2DEW X;  4N2B A;  5AK8 A;  3BPB A;  4N2M A; 
#chains in the Genus database with same CATH homology
 3APM A;  4BOF A;  4X8G A;  2CI5 A;  1JDX A;  1BWD A;  4N20 A;  4X8C A;  1RXX A;  3P8P A;  3I4A A;  3P8E A;  4N24 A;  5M3Q A;  5AK7 A;  2DW5 A;  3B1U A;  4N2A A;  2C6Z A;  2ACI A;  8JDW A;  3H7C X;  4N2C A;  1XKN A;  2Q3U A;  2AAF A;  4N2H A;  4N26 A;  1JDW A;  2JAJ A;  4N2D A;  1ZBR A;  1G62 A;  3RHY A;  5AN9 I;  2CI1 A;  7JDW A;  4YT9 A;  2ABR A;  1S9R A;  3I2E A;  1LXY A;  2DEX X;  4YTG A;  1WD8 A;  2DEY X;  4N2N A;  4N25 A;  2JDX A;  2CI7 A;  1G61 A;  4YTB A;  2A9G A;  2JDW A;  4JDW A;  4N2F A;  9JDW A;  1H70 A;  1WDA A;  4E4J A;  1WD9 A;  3HVM A;  4N2E A;  5HP5 A;  4N2K A;  2CMU A;  3B1T A;  3H7K A;  4N2I A;  4N22 A;  3APN A;  2CI4 A;  1VKP A;  4DKT A;  2CI3 A;  2CI6 A;  2EWO A;  4N28 A;  2JER A;  5JDW A;  6JDW A;  3JDW A;  2JAI A;  4N2G A;  4N2L A;  2DEW X;  4N2B A;  5AK8 A;  3BPB A;  4N2M A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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