1JDYA

Rabbit muscle phosphoglucomutase
Total Genus 184
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
184
sequence length
561
structure length
560
Chain Sequence
VKIVTVKTKAYPDQKPGTSGLRKRVKVFQSSTNYAENFIQSIISTVEPAQRQEATLVVGGDGRFYMKEAIQLIVRIAAANGIGRLVIGQNGILSTPAVSCIIRKIKAIGGIILTAHNPGGPNGDFGIKFNISNGGPAPEAITDKIFQISKTIEEYAICPDLKVDLGVLGKQQFDLENKFKPFTVEIVDSVEAYATMLRNIFDFNALKELLSGPNRLKIRIDAMHGVVGPYVKKILCEELGAPANSAVNCVPLEDFGGHHPDPNLTYAADLVETMKSGEHDFGAAFDGDGDRNMILGKHGFFVNPSDSVAVIAANIFSIPYFQQTGVRGFARSMPTSGALDRVANATKIALYETPTGWKFFGNLMDASKLSLCGEESFGTGSDHIREKDGLWAVLAWLSILATRKQSVEDILKDHWHKFGRNFFTRYDYEEVEAEGATKMMKDLEALMFDRSFVGKQFSANDKVYTVEKADNFEYHDPVDGSVSKNQGLRLIFADGSRIIFRLSGTGSAGATIRLYIDSYEKDNAKINQDPQVMLAPLISIALKVSQLQERTGRTAPTVIT
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Phosphotransferase
publication title Structural Changes at the Metal Ion Binding Site During the Phosphoglucomutase Reaction
rcsb
molecule keywords PHOSPHOGLUCOMUTASE
total genus 184
structure length 560
sequence length 561
chains with identical sequence B
ec nomenclature ec 5.4.2.2: Phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent).
pdb deposition date 1996-07-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00408 PGM_PMM_IV Phosphoglucomutase/phosphomannomutase, C-terminal domain
A PF02878 PGM_PMM_I Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
A PF02879 PGM_PMM_II Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II
A PF02880 PGM_PMM_III Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.310.50 Alpha Beta 2-Layer Sandwich TATA-Binding Protein Alpha-D-phosphohexomutase, C-terminal domain 1jdyA04
3.40.120.10 Alpha Beta 3-Layer(aba) Sandwich Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3 Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 1jdyA02
3.40.120.10 Alpha Beta 3-Layer(aba) Sandwich Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3 Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 1jdyA03
3.40.120.10 Alpha Beta 3-Layer(aba) Sandwich Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3 Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 1jdyA01
3PMGA 5BMNA 4WX8A 1P5DX 5EPCA 2FKMX 4QG5A 2Z0FA 3ENCA 3NA5A 1C47A 1KFIA 2DKDA 1K2YX 1P5GX 3C04A 3UW2A 2EHPA 4BJUA 3I3WA 1C4GA 3OLPA 2H5AX 2DKCA 4HJHA 5BMPA 3RSMA 1PCJX 1WQAA 1VKLA 1LXTA 3ENOC 1K35A 2FUVA 4MRQA 1JDYA 2H4LX 5JN5A 2JPIA 2EIUA 1PCMX 3PDKA 3BKQX 5JMVD 1TUOA 2DKAA 2F7LA 4WXAA 1WJWA 5KL0A 5HSHA 1KFQA 2FKFA 5F9CA 4IL8A
chains in the Genus database with same CATH superfamily
1E42A 2QRDA 3PMGA 2OOYA 2D0BA 1P5DX 4ROCB 1VOKA 2IV9A 1AISA 1QNBA 3TDHA 3OGDA 1B9KA 4B0AA 2YA3A 3NA5A 1QN4A 1C47A 1KFIA 2DKDA 3C04A 3UW2A 1W80A 1HU0A 2IV8A 2R5XA 1MP9A 2NOFA 3DPUA 1QN6A 1J3MA 1Q9UA 1N3AA 2NOZA 3RSMA 1M3HA 2NOBA 1QN5A 2HL8A 3HS8A 1T6AA 3CWUA 2O3OA 3ENOC 2OOXA 3IH7A 1YQKA 5AN4A 1PVSA 1KYDA 2NOEA 3DPTA 2JPIA 3CW7A 4PY5A 1PCMX 1UL7A 1TUOA 2NWVA 2HZSA 1TBAB 3OSEA 3KTUA 1QTSA 1QN9A 3RPJA 2JHJA 5IYDP 5BMNA 2NOIA 3T4NA 2FKMX 3CVSA 1YQLA 3ENCA 3I0WA 1LWYA 3OH9A 2V9JA 1P5GX 3ASMA 4D7RA 3D4VA 1NVPA 4TPSA 3D7QA 3CVTA 3OSTA 1QN7A 1C4GA 3SNSA 1CDWA 2MJ7A 3EIKA 4DULA 3ULXA 1YTBA 4EAIA 2I5WA 2YH5A 2ZFDB 1VTOA 1KYFA 1QTPA 1FN7A 1D3UA 2V8QA 3CWSA 2FUVA 4EAKA 1VTLE 2V92A 1R4XA 3EAYA 2DKAA 2G30A 2XHIA 3F0ZA 1M3QA 5IYBP 5HSHA 4ROEB 1QN8A 2FKFA 4IL8A 1QNEA 1XSZA 2D0AA 1KY7A 2QRCA 1LWWA 2HKPA 2Z0FA 2LAEA 3OCIA 1MPGA 3OC3C 3HS9A 3F10A 2PWWA 1N3CA 1DIZA 4BJUA 4D7QA 2EHBD 3OH6A 1QN3A 3OLPA 1JFIC 3CWTA 4HJHA 5BMPA 3CWAA 1TBPA 1WQAA 5IYCP 1QNCA 1LXTA 2JOIA 2HZMA 1V5SA 1K35A 4MRQA 2VJ0A 1YQMA 5JN5A 1QNAA 4EALA 2NVMA 3PDKA 5JMVD 2F7LA 1UT7A 1UT4A 1WJWA 1K2YX 1KFQA 5F9CA 1TGHA 2Y8QA 3OSMA 1EBMA 1KY6A 2Z8UA 3N89A 2NOLA 4WX8A 2NLVA 3H1ZA 5EPCA 4QG5A 1NGMA 3TE5A 1KO9A 2D0CA 4I8OA 1VOLB 2NOHA 2EHPA 2FGTA 2QLVA 4WZSD 1NH2A 1C9BB 3VN5A 4CFFA 3I3WA 1EUVA 2H5AX 2QREA 2DKCA 4RODB 1PCJX 1PZDA 1VKLA 1N39A 3I0XA 1M5Q1 1KYUA 1PCZA 3KRMA 1JDYA 2H4LX 4EJZA 2MZ8A 2JHNA 2QR1A 4EJYA 2Y8LA 2EIUA 3BKQX 4C7PA 4EAGA 4WXAA 1RM1A 4EAJA 1YTFA 1LWVA 4Q11A 5KL0A 1YQRA 2HL9A
chains in the Genus database with same CATH topology
3PMGA 5BMNA 4WX8A 1P5DX 5EPCA 2FKMX 4QG5A 2Z0FA 3ENCA 3NA5A 1C47A 1KFIA 2DKDA 1K2YX 1P5GX 3C04A 3UW2A 2EHPA 4BJUA 3I3WA 1C4GA 3OLPA 2H5AX 2DKCA 4HJHA 5BMPA 3RSMA 1PCJX 1WQAA 1VKLA 1LXTA 3ENOC 1K35A 2FUVA 4MRQA 1JDYA 2H4LX 5JN5A 2JPIA 2EIUA 1PCMX 3PDKA 3BKQX 5JMVD 1TUOA 2DKAA 2F7LA 4WXAA 1WJWA 5KL0A 5HSHA 1KFQA 2FKFA 5F9CA 4IL8A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3PMG A;  5BMN A;  4WX8 A;  1P5D X;  5EPC A;  2FKM X;  4QG5 A;  2Z0F A;  3ENC A;  3NA5 A;  1C47 A;  1KFI A;  2DKD A;  1K2Y X;  1P5G X;  3C04 A;  3UW2 A;  2EHP A;  4BJU A;  3I3W A;  1C4G A;  3OLP A;  2H5A X;  2DKC A;  4HJH A;  5BMP A;  3RSM A;  1PCJ X;  1WQA A;  1VKL A;  1LXT A;  3ENO C;  1K35 A;  2FUV A;  4MRQ A;  1JDY A;  2H4L X;  5JN5 A;  2JPI A;  2EIU A;  1PCM X;  3PDK A;  3BKQ X;  5JMV D;  1TUO A;  2DKA A;  2F7L A;  4WXA A;  1WJW A;  5KL0 A;  5HSH A;  1KFQ A;  2FKF A;  5F9C A;  4IL8 A; 
#chains in the Genus database with same CATH topology
 1E42 A;  2QRD A;  3PMG A;  2OOY A;  2D0B A;  1P5D X;  4ROC B;  1VOK A;  2IV9 A;  1AIS A;  1QNB A;  3TDH A;  3OGD A;  1B9K A;  4B0A A;  2YA3 A;  3NA5 A;  1QN4 A;  1C47 A;  1KFI A;  2DKD A;  3C04 A;  3UW2 A;  1W80 A;  1HU0 A;  2IV8 A;  2R5X A;  1MP9 A;  2NOF A;  3DPU A;  1QN6 A;  1J3M A;  1Q9U A;  1N3A A;  2NOZ A;  3RSM A;  1M3H A;  2NOB A;  1QN5 A;  2HL8 A;  3HS8 A;  1T6A A;  3CWU A;  2O3O A;  3ENO C;  2OOX A;  3IH7 A;  1YQK A;  5AN4 A;  1PVS A;  1KYD A;  2NOE A;  3DPT A;  2JPI A;  3CW7 A;  4PY5 A;  1PCM X;  1UL7 A;  1TUO A;  2NWV A;  2HZS A;  1TBA B;  3OSE A;  3KTU A;  1QTS A;  1QN9 A;  3RPJ A;  2JHJ A;  5IYD P;  5BMN A;  2NOI A;  3T4N A;  2FKM X;  3CVS A;  1YQL A;  3ENC A;  3I0W A;  1LWY A;  3OH9 A;  2V9J A;  1P5G X;  3ASM A;  4D7R A;  3D4V A;  1NVP A;  4TPS A;  3D7Q A;  3CVT A;  3OST A;  1QN7 A;  1C4G A;  3SNS A;  1CDW A;  2MJ7 A;  3EIK A;  4DUL A;  3ULX A;  1YTB A;  4EAI A;  2I5W A;  2YH5 A;  2ZFD B;  1VTO A;  1KYF A;  1QTP A;  1FN7 A;  1D3U A;  2V8Q A;  3CWS A;  2FUV A;  4EAK A;  1VTL E;  2V92 A;  1R4X A;  3EAY A;  2DKA A;  2G30 A;  2XHI A;  3F0Z A;  1M3Q A;  5IYB P;  5HSH A;  4ROE B;  1QN8 A;  2FKF A;  4IL8 A;  1QNE A;  1XSZ A;  2D0A A;  1KY7 A;  2QRC A;  1LWW A;  2HKP A;  2Z0F A;  2LAE A;  3OCI A;  1MPG A;  3OC3 C;  3HS9 A;  3F10 A;  2PWW A;  1N3C A;  1DIZ A;  4BJU A;  4D7Q A;  2EHB D;  3OH6 A;  1QN3 A;  3OLP A;  1JFI C;  3CWT A;  4HJH A;  5BMP A;  3CWA A;  1TBP A;  1WQA A;  5IYC P;  1QNC A;  1LXT A;  2JOI A;  2HZM A;  1V5S A;  1K35 A;  4MRQ A;  2VJ0 A;  1YQM A;  5JN5 A;  1QNA A;  4EAL A;  2NVM A;  3PDK A;  5JMV D;  2F7L A;  1UT7 A;  1UT4 A;  1WJW A;  1K2Y X;  1KFQ A;  5F9C A;  1TGH A;  2Y8Q A;  3OSM A;  1EBM A;  1KY6 A;  2Z8U A;  3N89 A;  2NOL A;  4WX8 A;  2NLV A;  3H1Z A;  5EPC A;  4QG5 A;  1NGM A;  3TE5 A;  1KO9 A;  2D0C A;  4I8O A;  1VOL B;  2NOH A;  2EHP A;  2FGT A;  2QLV A;  4WZS D;  1NH2 A;  1C9B B;  3VN5 A;  4CFF A;  3I3W A;  1EUV A;  2H5A X;  2QRE A;  2DKC A;  4ROD B;  1PCJ X;  1PZD A;  1VKL A;  1N39 A;  3I0X A;  1M5Q 1;  1KYU A;  1PCZ A;  3KRM A;  1JDY A;  2H4L X;  4EJZ A;  2MZ8 A;  2JHN A;  2QR1 A;  4EJY A;  2Y8L A;  2EIU A;  3BKQ X;  4C7P A;  4EAG A;  4WXA A;  1RM1 A;  4EAJ A;  1YTF A;  1LWV A;  4Q11 A;  5KL0 A;  1YQR A;  2HL9 A; 
#chains in the Genus database with same CATH homology
 3PMG A;  5BMN A;  4WX8 A;  1P5D X;  5EPC A;  2FKM X;  4QG5 A;  2Z0F A;  3ENC A;  3NA5 A;  1C47 A;  1KFI A;  2DKD A;  1K2Y X;  1P5G X;  3C04 A;  3UW2 A;  2EHP A;  4BJU A;  3I3W A;  1C4G A;  3OLP A;  2H5A X;  2DKC A;  4HJH A;  5BMP A;  3RSM A;  1PCJ X;  1WQA A;  1VKL A;  1LXT A;  3ENO C;  1K35 A;  2FUV A;  4MRQ A;  1JDY A;  2H4L X;  5JN5 A;  2JPI A;  2EIU A;  1PCM X;  3PDK A;  3BKQ X;  5JMV D;  1TUO A;  2DKA A;  2F7L A;  4WXA A;  1WJW A;  5KL0 A;  5HSH A;  1KFQ A;  2FKF A;  5F9C A;  4IL8 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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