1JDYA

Rabbit muscle phosphoglucomutase
Total Genus 184
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
184
sequence length
561
structure length
560
Chain Sequence
VKIVTVKTKAYPDQKPGTSGLRKRVKVFQSSTNYAENFIQSIISTVEPAQRQEATLVVGGDGRFYMKEAIQLIVRIAAANGIGRLVIGQNGILSTPAVSCIIRKIKAIGGIILTAHNPGGPNGDFGIKFNISNGGPAPEAITDKIFQISKTIEEYAICPDLKVDLGVLGKQQFDLENKFKPFTVEIVDSVEAYATMLRNIFDFNALKELLSGPNRLKIRIDAMHGVVGPYVKKILCEELGAPANSAVNCVPLEDFGGHHPDPNLTYAADLVETMKSGEHDFGAAFDGDGDRNMILGKHGFFVNPSDSVAVIAANIFSIPYFQQTGVRGFARSMPTSGALDRVANATKIALYETPTGWKFFGNLMDASKLSLCGEESFGTGSDHIREKDGLWAVLAWLSILATRKQSVEDILKDHWHKFGRNFFTRYDYEEVEAEGATKMMKDLEALMFDRSFVGKQFSANDKVYTVEKADNFEYHDPVDGSVSKNQGLRLIFADGSRIIFRLSGTGSAGATIRLYIDSYEKDNAKINQDPQVMLAPLISIALKVSQLQERTGRTAPTVIT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Structural Changes at the Metal Ion Binding Site During the Phosphoglucomutase Reaction
rcsb
molecule keywords PHOSPHOGLUCOMUTASE
molecule tags Phosphotransferase
total genus 184
structure length 560
sequence length 561
chains with identical sequence B
ec nomenclature ec 5.4.2.2: Phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent).
pdb deposition date 1996-07-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00408 PGM_PMM_IV Phosphoglucomutase/phosphomannomutase, C-terminal domain
A PF02878 PGM_PMM_I Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
A PF02879 PGM_PMM_II Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II
A PF02880 PGM_PMM_III Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.310.50 Alpha Beta 2-Layer Sandwich TATA-Binding Protein Alpha-D-phosphohexomutase, C-terminal domain 1jdyA04
3.40.120.10 Alpha Beta 3-Layer(aba) Sandwich Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3 Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 1jdyA02
3.40.120.10 Alpha Beta 3-Layer(aba) Sandwich Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3 Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 1jdyA03
3.40.120.10 Alpha Beta 3-Layer(aba) Sandwich Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3 Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 1jdyA01
2EIUA 2DKDA 3OLPA 1C4GA 1TUOA 3ENOC 2H5AX 2EHPA 3I3WA 5KL0A 4HJHA 2Z0FA 5JN5A 2FKMX 1P5DX 3C04A 3ENCA 2H4LX 2FUVA 3PDKA 2JPIA 1K35A 1JDYA 1KFQA 5BMPA 2DKAA 2F7LA 3BKQX 4BJUA 3PMGA 1WQAA 5EPCA 5JMVD 4QG5A 3UW2A 5F9CA 4WX8A 5BMNA 4MRQA 3NA5A 2DKCA 4IL8A 5HSHA 1PCJX 1KFIA 1LXTA 2FKFA 1C47A 1P5GX 3RSMA 4WXAA 1WJWA 1PCMX 1VKLA 1K2YX
chains in the Genus database with same CATH superfamily
2DKDA 4C7PA 2V92A 3OGDA 4DULA 3OH9A 4EAGA 2EHPA 2PWWA 3H1ZA 2MZ8A 1YTBA 1VOLB 3C04A 2OOXA 2HZMA 2NOHA 3TE5A 1DIZA 2JOIA 2JPIA 1KFQA 3DPTA 1QN6A 3OCIA 3BKQX 1XSZA 2NWVA 1KYDA 3PMGA 2IV9A 1WQAA 2OOYA 2R5XA 2D0BA 5JMVD 1NGMA 3UW2A 3CWSA 2QRDA 1HU0A 3RPJA 4WX8A 3T4NA 4ROCB 5BMNA 1YQKA 1QNEA 2DKCA 1PCZA 1LXTA 2G30A 2HZSA 1C47A 3N89A 3RSMA 4RODB 1UL7A 2EIUA 1UT7A 2QLVA 1C4GA 1KO9A 2HKPA 2H5AX 2JHJA 1B9KA 2YA3A 2NOEA 4Q11A 5JN5A 1QNAA 3ASMA 1Q9UA 4I8OA 1MP9A 1QN9A 4B0AA 5AN4A 1J3MA 5BMPA 1VTOA 5IYCP 1T6AA 2DKAA 2HL9A 2QR1A 1QNCA 1QN4A 1N39A 1D3UA 4EJYA 2NOFA 2NOLA 3SNSA 1VTLE 3EAYA 1UT4A 4D7RA 5F9CA 1AISA 1LWYA 4EAIA 1CDWA 2D0CA 2Y8QA 4WZSD 1NH2A 1M3QA 2QREA 3VN5A 3OH6A 1WJWA 4CFFA 1PCMX 3TDHA 3I0XA 1N3AA 1K2YX 2EHBD 2O3OA 2IV8A 2VJ0A 3OLPA 1E42A 1TUOA 4D7QA 3ENOC 3ULXA 5IYBP 5KL0A 1EBMA 2V9JA 1JFIC 3ENCA 3CVTA 4EALA 2FUVA 1K35A 1JDYA 3HS8A 1W80A 1YQMA 3CW7A 2F7LA 1M3HA 1KYFA 2NOZA 1QN8A 4QG5A 1N3CA 1QN7A 3F0ZA 1MPGA 1EUVA 3DPUA 3NA5A 4TPSA 3D7QA 1QN5A 1PZDA 2XHIA 4IL8A 3KRMA 4PY5A 2FKFA 1LWVA 3CWUA 1LWWA 4EAKA 4WXAA 2NVMA 1KY7A 2Y8LA 3OC3C 2JHNA 1FN7A 1PVSA 1QTSA 2HL8A 1KY6A 2V8QA 1VOKA 1YTFA 3I3WA 4HJHA 3OSEA 2Z0FA 1R4XA 2YH5A 3I0WA 2FKMX 1P5DX 2MJ7A 2Z8UA 1V5SA 2H4LX 2NOBA 1TGHA 1YQRA 3F10A 3PDKA 3D4VA 2I5WA 4EAJA 4EJZA 3CVSA 4BJUA 1QN3A 1TBAB 1RM1A 2ZFDB 3EIKA 1NVPA 1TBPA 5EPCA 2NOIA 3KTUA 1C9BB 1QTPA 1QNBA 5IYDP 2NLVA 1KYUA 1YQLA 4MRQA 2QRCA 3CWTA 2D0AA 1M5Q1 3OSTA 5HSHA 1PCJX 1KFIA 2FGTA 3OSMA 4ROEB 3IH7A 1P5GX 3CWAA 3HS9A 1VKLA 2LAEA
chains in the Genus database with same CATH topology
2EIUA 2DKDA 3OLPA 1C4GA 1TUOA 3ENOC 2H5AX 2EHPA 3I3WA 5KL0A 4HJHA 2Z0FA 5JN5A 2FKMX 1P5DX 3C04A 3ENCA 2H4LX 2FUVA 3PDKA 2JPIA 1K35A 1JDYA 1KFQA 5BMPA 2DKAA 2F7LA 3BKQX 4BJUA 3PMGA 1WQAA 5EPCA 5JMVD 4QG5A 3UW2A 5F9CA 4WX8A 5BMNA 4MRQA 3NA5A 2DKCA 4IL8A 5HSHA 1PCJX 1KFIA 1LXTA 2FKFA 1C47A 1P5GX 3RSMA 4WXAA 1WJWA 1PCMX 1VKLA 1K2YX
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2EIU A;  2DKD A;  3OLP A;  1C4G A;  1TUO A;  3ENO C;  2H5A X;  2EHP A;  3I3W A;  5KL0 A;  4HJH A;  2Z0F A;  5JN5 A;  2FKM X;  1P5D X;  3C04 A;  3ENC A;  2H4L X;  2FUV A;  3PDK A;  2JPI A;  1K35 A;  1JDY A;  1KFQ A;  5BMP A;  2DKA A;  2F7L A;  3BKQ X;  4BJU A;  3PMG A;  1WQA A;  5EPC A;  5JMV D;  4QG5 A;  3UW2 A;  5F9C A;  4WX8 A;  5BMN A;  4MRQ A;  3NA5 A;  2DKC A;  4IL8 A;  5HSH A;  1PCJ X;  1KFI A;  1LXT A;  2FKF A;  1C47 A;  1P5G X;  3RSM A;  4WXA A;  1WJW A;  1PCM X;  1VKL A;  1K2Y X; 
#chains in the Genus database with same CATH topology
 2DKD A;  4C7P A;  2V92 A;  3OGD A;  4DUL A;  3OH9 A;  4EAG A;  2EHP A;  2PWW A;  3H1Z A;  2MZ8 A;  1YTB A;  1VOL B;  3C04 A;  2OOX A;  2HZM A;  2NOH A;  3TE5 A;  1DIZ A;  2JOI A;  2JPI A;  1KFQ A;  3DPT A;  1QN6 A;  3OCI A;  3BKQ X;  1XSZ A;  2NWV A;  1KYD A;  3PMG A;  2IV9 A;  1WQA A;  2OOY A;  2R5X A;  2D0B A;  5JMV D;  1NGM A;  3UW2 A;  3CWS A;  2QRD A;  1HU0 A;  3RPJ A;  4WX8 A;  3T4N A;  4ROC B;  5BMN A;  1YQK A;  1QNE A;  2DKC A;  1PCZ A;  1LXT A;  2G30 A;  2HZS A;  1C47 A;  3N89 A;  3RSM A;  4ROD B;  1UL7 A;  2EIU A;  1UT7 A;  2QLV A;  1C4G A;  1KO9 A;  2HKP A;  2H5A X;  2JHJ A;  1B9K A;  2YA3 A;  2NOE A;  4Q11 A;  5JN5 A;  1QNA A;  3ASM A;  1Q9U A;  4I8O A;  1MP9 A;  1QN9 A;  4B0A A;  5AN4 A;  1J3M A;  5BMP A;  1VTO A;  5IYC P;  1T6A A;  2DKA A;  2HL9 A;  2QR1 A;  1QNC A;  1QN4 A;  1N39 A;  1D3U A;  4EJY A;  2NOF A;  2NOL A;  3SNS A;  1VTL E;  3EAY A;  1UT4 A;  4D7R A;  5F9C A;  1AIS A;  1LWY A;  4EAI A;  1CDW A;  2D0C A;  2Y8Q A;  4WZS D;  1NH2 A;  1M3Q A;  2QRE A;  3VN5 A;  3OH6 A;  1WJW A;  4CFF A;  1PCM X;  3TDH A;  3I0X A;  1N3A A;  1K2Y X;  2EHB D;  2O3O A;  2IV8 A;  2VJ0 A;  3OLP A;  1E42 A;  1TUO A;  4D7Q A;  3ENO C;  3ULX A;  5IYB P;  5KL0 A;  1EBM A;  2V9J A;  1JFI C;  3ENC A;  3CVT A;  4EAL A;  2FUV A;  1K35 A;  1JDY A;  3HS8 A;  1W80 A;  1YQM A;  3CW7 A;  2F7L A;  1M3H A;  1KYF A;  2NOZ A;  1QN8 A;  4QG5 A;  1N3C A;  1QN7 A;  3F0Z A;  1MPG A;  1EUV A;  3DPU A;  3NA5 A;  4TPS A;  3D7Q A;  1QN5 A;  1PZD A;  2XHI A;  4IL8 A;  3KRM A;  4PY5 A;  2FKF A;  1LWV A;  3CWU A;  1LWW A;  4EAK A;  4WXA A;  2NVM A;  1KY7 A;  2Y8L A;  3OC3 C;  2JHN A;  1FN7 A;  1PVS A;  1QTS A;  2HL8 A;  1KY6 A;  2V8Q A;  1VOK A;  1YTF A;  3I3W A;  4HJH A;  3OSE A;  2Z0F A;  1R4X A;  2YH5 A;  3I0W A;  2FKM X;  1P5D X;  2MJ7 A;  2Z8U A;  1V5S A;  2H4L X;  2NOB A;  1TGH A;  1YQR A;  3F10 A;  3PDK A;  3D4V A;  2I5W A;  4EAJ A;  4EJZ A;  3CVS A;  4BJU A;  1QN3 A;  1TBA B;  1RM1 A;  2ZFD B;  3EIK A;  1NVP A;  1TBP A;  5EPC A;  2NOI A;  3KTU A;  1C9B B;  1QTP A;  1QNB A;  5IYD P;  2NLV A;  1KYU A;  1YQL A;  4MRQ A;  2QRC A;  3CWT A;  2D0A A;  1M5Q 1;  3OST A;  5HSH A;  1PCJ X;  1KFI A;  2FGT A;  3OSM A;  4ROE B;  3IH7 A;  1P5G X;  3CWA A;  3HS9 A;  1VKL A;  2LAE A; 
#chains in the Genus database with same CATH homology
 2EIU A;  2DKD A;  3OLP A;  1C4G A;  1TUO A;  3ENO C;  2H5A X;  2EHP A;  3I3W A;  5KL0 A;  4HJH A;  2Z0F A;  5JN5 A;  2FKM X;  1P5D X;  3C04 A;  3ENC A;  2H4L X;  2FUV A;  3PDK A;  2JPI A;  1K35 A;  1JDY A;  1KFQ A;  5BMP A;  2DKA A;  2F7L A;  3BKQ X;  4BJU A;  3PMG A;  1WQA A;  5EPC A;  5JMV D;  4QG5 A;  3UW2 A;  5F9C A;  4WX8 A;  5BMN A;  4MRQ A;  3NA5 A;  2DKC A;  4IL8 A;  5HSH A;  1PCJ X;  1KFI A;  1LXT A;  2FKF A;  1C47 A;  1P5G X;  3RSM A;  4WXA A;  1WJW A;  1PCM X;  1VKL A;  1K2Y X; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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