1JGKA

Solution structure of candoxin
Total Genus 3
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
3
sequence length
66
structure length
66
Chain Sequence
MKCKICNFDTCRAGELKVCASGEKYCFKESWREARGTRIERGCAATCPKGSVYGLYVLCCTTDDCN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Toxin
publication title SOLUTION STRUCTURE OF CANDOXIN, A REVERSIBLE, POSTSYNAPTIC NEUROTOXIN PURIFIED FROM THE VENOM OF BUNGARUS CANDIDUS (MALAYAN KRAIT)
rcsb
molecule keywords CANDOXIN
total genus 3
structure length 66
sequence length 66
ec nomenclature
pdb deposition date 2001-06-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00087 Toxin_TOLIP Snake toxin and toxin-like protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.60.10 Mainly Beta Ribbon CD59 CD59 1jgkA00
1CRFA 1IDHA 2UWRA 1CCQA 2GOOB 2I9BE 1CDQA 1HOYA 3NH7A 1L4WA 1IDGA 1JBDA 4QTIU 1NXBA 5DZ5A 2CDXA 2FD6U 1KXIA 3EBXA 1TGXA 1G6MA 1TXAA 2BHIA 4EY8B 1ONJA 1FSSB 1KBAA 4XJJA 1PLOA 2H64B 1UG4A 2MJYA 1KU6B 4HQPF 1F94A 4RUDA 1LXGA 2MUOA 1LX5B 2X8BB 1FRAA 1TXBA 1NYSA 1ERGA 2PJYC 3BT1U 3NEQA 1FFJA 1NEAA 1IQ9A 1ES7B 1CHVS 2MUPA 2GOOC 3LAQU 1QKDA 4BDTB 1YWHA 1CB9A 1CXOA 2QJBC 1I02A 1F8UB 1HC9B 1CTXA 3EVSC 1MR6A 2H7ZB 2L5SA 5DO6A 3BT2U 1FASA 2H8UA 2MFAA 1LXHA 1HC9A 1LSIA 2CRTA 2CRSA 4DO8A 1B41B 2N99A 4ZQYA 2H7ZA 3PLCA 2H5FA 1NTNA 1COEA 1KS6A 1NTXA 1KBSA 3QB4B 2J8BA 1IJCA 2H64C 1IK8A 1VB0A 2MJ0A 3ERAA 1ZADA 1ERAA 3U74U 5EBXA 1REWC 1RL5A 1KTZB 2HLQA 1KL8A 5IMYC 1XT3A 2MJ4A 1FF4A 1TFSA 1BTEA 2UX2A 1CXNA 4LFTA 1DRSA 1V6PA 4BIKB 1QKEA 1M9ZA 1IDIA 3FEVA 4OM5A 1CODA 4OM4A 2H62C 4FAOC 1S4YA 3VTSA 2BTXA 6EBXA 2HLRA 2ERAA 2VLWA 2QJAC 2MHYA 1QM7A 1CREA 2CCXA 1H0JA 2L03A 5IMTD 2JVEA 3NDSA 1ABTA 1HAJA 2LCRA 1MAHF 3KFDE 4FAOE 1BXPA 2LA1A 1JGKA 2ABXA 2JQPA 1KFHA 4IYEA 1CDTA 2OFSA 1CDRA 2H62D 3KFDI 2NBTA 5DU1A 4UY2C 2QJ9C 1KC4A 3U73U 1IKCA 1IDLA 1RGJA 4P7UA 1CDSA 1LJZA 2QC1A 3HH7A 1NORA 1NYUA 1FSCA 4AEAA 2PJYB 1W6BA 1JE9A 2CTXA 2K3GA 1KBTA 1HAAA 1CVOA
chains in the Genus database with same CATH superfamily
1CRFA 1IDHA 2UWRA 1CCQA 2GOOB 2I9BE 1CDQA 1HOYA 3NH7A 1L4WA 1IDGA 1JBDA 4QTIU 1NXBA 5DZ5A 2CDXA 2FD6U 1KXIA 3EBXA 1TGXA 1G6MA 1TXAA 2BHIA 4EY8B 1ONJA 1FSSB 1KBAA 4XJJA 1PLOA 2H64B 1UG4A 2MJYA 1KU6B 4HQPF 1F94A 4RUDA 1LXGA 2MUOA 1LX5B 2X8BB 1FRAA 1TXBA 1NYSA 1ERGA 2PJYC 3BT1U 3NEQA 1FFJA 1NEAA 1IQ9A 1ES7B 1CHVS 2MUPA 2GOOC 3LAQU 1QKDA 4BDTB 1YWHA 1CB9A 1CXOA 2QJBC 1I02A 1F8UB 1HC9B 1CTXA 3EVSC 1MR6A 2H7ZB 2L5SA 5DO6A 3BT2U 4KSNA 1FASA 2H8UA 2MFAA 1LXHA 1HC9A 1LSIA 2CRTA 2CRSA 4DO8A 1B41B 2N99A 4ZQYA 2H7ZA 3PLCA 2H5FA 1NTNA 1COEA 1KS6A 1NTXA 1KBSA 3QB4B 2J8BA 1IJCA 2H64C 1IK8A 1VB0A 2MJ0A 3ERAA 1ZADA 1ERAA 3U74U 5EBXA 1REWC 1RL5A 1KTZB 2HLQA 1KL8A 5IMYC 1XT3A 2MJ4A 1FF4A 1TFSA 1BTEA 2UX2A 1CXNA 4LFTA 1DRSA 1V6PA 4BIKB 1QKEA 1M9ZA 1IDIA 3FEVA 4OM5A 1CODA 4OM4A 2H62C 4FAOC 1S4YA 3VTSA 2BTXA 6EBXA 2HLRA 2ERAA 2VLWA 2QJAC 2MHYA 1QM7A 1CREA 2CCXA 1H0JA 2L03A 5IMTD 2JVEA 3NDSA 1ABTA 1HAJA 2LCRA 1MAHF 3KFDE 4FAOE 1BXPA 2LA1A 1JGKA 2ABXA 2JQPA 1KFHA 4IYEA 1CDTA 2OFSA 1CDRA 2H62D 3KFDI 2NBTA 5DU1A 4UY2C 2QJ9C 1KC4A 3U73U 1IKCA 1IDLA 1RGJA 4P7UA 1CDSA 1LJZA 2QC1A 3HH7A 1NORA 1NYUA 1FSCA 4AEAA 2PJYB 1W6BA 1JE9A 2CTXA 2K3GA 1KBTA 1HAAA 1CVOA
chains in the Genus database with same CATH topology
1CRFA 1IDHA 2UWRA 1CCQA 2GOOB 2I9BE 1CDQA 1HOYA 3NH7A 1L4WA 1IDGA 1JBDA 4QTIU 1NXBA 5DZ5A 2CDXA 2FD6U 1KXIA 3EBXA 1TGXA 1G6MA 1TXAA 2BHIA 4EY8B 1ONJA 1FSSB 1KBAA 4XJJA 1PLOA 2H64B 1UG4A 2MJYA 1KU6B 4HQPF 1F94A 4RUDA 1LXGA 2MUOA 1LX5B 2X8BB 1FRAA 1TXBA 1NYSA 1ERGA 2PJYC 3BT1U 3NEQA 1FFJA 1NEAA 1IQ9A 1ES7B 1CHVS 2MUPA 2GOOC 3LAQU 1QKDA 4BDTB 1YWHA 1CB9A 1CXOA 2QJBC 1I02A 1F8UB 1HC9B 1CTXA 3EVSC 1MR6A 2H7ZB 2L5SA 5DO6A 3BT2U 4KSNA 1FASA 2H8UA 2MFAA 1LXHA 1HC9A 1LSIA 2CRTA 2CRSA 4DO8A 1B41B 2N99A 4ZQYA 2H7ZA 3PLCA 2H5FA 1NTNA 1COEA 1KS6A 1NTXA 1KBSA 3QB4B 2J8BA 1IJCA 2H64C 1IK8A 1VB0A 2MJ0A 3ERAA 1ZADA 1ERAA 3U74U 5EBXA 1REWC 1RL5A 1KTZB 2HLQA 1KL8A 5IMYC 1XT3A 2MJ4A 1FF4A 1TFSA 1BTEA 2UX2A 1CXNA 4LFTA 1DRSA 1V6PA 4BIKB 1QKEA 1M9ZA 1IDIA 3FEVA 4OM5A 1CODA 4OM4A 2H62C 4FAOC 1S4YA 3VTSA 2BTXA 6EBXA 2HLRA 2ERAA 2VLWA 2QJAC 2MHYA 1QM7A 1CREA 2CCXA 1H0JA 2L03A 5IMTD 2JVEA 3NDSA 1ABTA 1HAJA 2LCRA 1MAHF 3KFDE 4FAOE 1BXPA 2LA1A 1JGKA 2ABXA 2JQPA 1KFHA 4IYEA 1CDTA 2OFSA 1CDRA 2H62D 3KFDI 2NBTA 5DU1A 4UY2C 2QJ9C 1KC4A 3U73U 1IKCA 1IDLA 1RGJA 4P7UA 1CDSA 1LJZA 2QC1A 3HH7A 1NORA 1NYUA 1FSCA 4AEAA 2PJYB 1W6BA 1JE9A 2CTXA 2K3GA 1KBTA 1HAAA 1CVOA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1CRF A;  1IDH A;  2UWR A;  1CCQ A;  2GOO B;  2I9B E;  1CDQ A;  1HOY A;  3NH7 A;  1L4W A;  1IDG A;  1JBD A;  4QTI U;  1NXB A;  5DZ5 A;  2CDX A;  2FD6 U;  1KXI A;  3EBX A;  1TGX A;  1G6M A;  1TXA A;  2BHI A;  4EY8 B;  1ONJ A;  1FSS B;  1KBA A;  4XJJ A;  1PLO A;  2H64 B;  1UG4 A;  2MJY A;  1KU6 B;  4HQP F;  1F94 A;  4RUD A;  1LXG A;  2MUO A;  1LX5 B;  2X8B B;  1FRA A;  1TXB A;  1NYS A;  1ERG A;  2PJY C;  3BT1 U;  3NEQ A;  1FFJ A;  1NEA A;  1IQ9 A;  1ES7 B;  1CHV S;  2MUP A;  2GOO C;  3LAQ U;  1QKD A;  4BDT B;  1YWH A;  1CB9 A;  1CXO A;  2QJB C;  1I02 A;  1F8U B;  1HC9 B;  1CTX A;  3EVS C;  1MR6 A;  2H7Z B;  2L5S A;  5DO6 A;  3BT2 U;  1FAS A;  2H8U A;  2MFA A;  1LXH A;  1HC9 A;  1LSI A;  2CRT A;  2CRS A;  4DO8 A;  1B41 B;  2N99 A;  4ZQY A;  2H7Z A;  3PLC A;  2H5F A;  1NTN A;  1COE A;  1KS6 A;  1NTX A;  1KBS A;  3QB4 B;  2J8B A;  1IJC A;  2H64 C;  1IK8 A;  1VB0 A;  2MJ0 A;  3ERA A;  1ZAD A;  1ERA A;  3U74 U;  5EBX A;  1REW C;  1RL5 A;  1KTZ B;  2HLQ A;  1KL8 A;  5IMY C;  1XT3 A;  2MJ4 A;  1FF4 A;  1TFS A;  1BTE A;  2UX2 A;  1CXN A;  4LFT A;  1DRS A;  1V6P A;  4BIK B;  1QKE A;  1M9Z A;  1IDI A;  3FEV A;  4OM5 A;  1COD A;  4OM4 A;  2H62 C;  4FAO C;  1S4Y A;  3VTS A;  2BTX A;  6EBX A;  2HLR A;  2ERA A;  2VLW A;  2QJA C;  2MHY A;  1QM7 A;  1CRE A;  2CCX A;  1H0J A;  2L03 A;  5IMT D;  2JVE A;  3NDS A;  1ABT A;  1HAJ A;  2LCR A;  1MAH F;  3KFD E;  4FAO E;  1BXP A;  2LA1 A;  1JGK A;  2ABX A;  2JQP A;  1KFH A;  4IYE A;  1CDT A;  2OFS A;  1CDR A;  2H62 D;  3KFD I;  2NBT A;  5DU1 A;  4UY2 C;  2QJ9 C;  1KC4 A;  3U73 U;  1IKC A;  1IDL A;  1RGJ A;  4P7U A;  1CDS A;  1LJZ A;  2QC1 A;  3HH7 A;  1NOR A;  1NYU A;  1FSC A;  4AEA A;  2PJY B;  1W6B A;  1JE9 A;  2CTX A;  2K3G A;  1KBT A;  1HAA A;  1CVO A; 
#chains in the Genus database with same CATH topology
 1CRF A;  1IDH A;  2UWR A;  1CCQ A;  2GOO B;  2I9B E;  1CDQ A;  1HOY A;  3NH7 A;  1L4W A;  1IDG A;  1JBD A;  4QTI U;  1NXB A;  5DZ5 A;  2CDX A;  2FD6 U;  1KXI A;  3EBX A;  1TGX A;  1G6M A;  1TXA A;  2BHI A;  4EY8 B;  1ONJ A;  1FSS B;  1KBA A;  4XJJ A;  1PLO A;  2H64 B;  1UG4 A;  2MJY A;  1KU6 B;  4HQP F;  1F94 A;  4RUD A;  1LXG A;  2MUO A;  1LX5 B;  2X8B B;  1FRA A;  1TXB A;  1NYS A;  1ERG A;  2PJY C;  3BT1 U;  3NEQ A;  1FFJ A;  1NEA A;  1IQ9 A;  1ES7 B;  1CHV S;  2MUP A;  2GOO C;  3LAQ U;  1QKD A;  4BDT B;  1YWH A;  1CB9 A;  1CXO A;  2QJB C;  1I02 A;  1F8U B;  1HC9 B;  1CTX A;  3EVS C;  1MR6 A;  2H7Z B;  2L5S A;  5DO6 A;  3BT2 U;  4KSN A;  1FAS A;  2H8U A;  2MFA A;  1LXH A;  1HC9 A;  1LSI A;  2CRT A;  2CRS A;  4DO8 A;  1B41 B;  2N99 A;  4ZQY A;  2H7Z A;  3PLC A;  2H5F A;  1NTN A;  1COE A;  1KS6 A;  1NTX A;  1KBS A;  3QB4 B;  2J8B A;  1IJC A;  2H64 C;  1IK8 A;  1VB0 A;  2MJ0 A;  3ERA A;  1ZAD A;  1ERA A;  3U74 U;  5EBX A;  1REW C;  1RL5 A;  1KTZ B;  2HLQ A;  1KL8 A;  5IMY C;  1XT3 A;  2MJ4 A;  1FF4 A;  1TFS A;  1BTE A;  2UX2 A;  1CXN A;  4LFT A;  1DRS A;  1V6P A;  4BIK B;  1QKE A;  1M9Z A;  1IDI A;  3FEV A;  4OM5 A;  1COD A;  4OM4 A;  2H62 C;  4FAO C;  1S4Y A;  3VTS A;  2BTX A;  6EBX A;  2HLR A;  2ERA A;  2VLW A;  2QJA C;  2MHY A;  1QM7 A;  1CRE A;  2CCX A;  1H0J A;  2L03 A;  5IMT D;  2JVE A;  3NDS A;  1ABT A;  1HAJ A;  2LCR A;  1MAH F;  3KFD E;  4FAO E;  1BXP A;  2LA1 A;  1JGK A;  2ABX A;  2JQP A;  1KFH A;  4IYE A;  1CDT A;  2OFS A;  1CDR A;  2H62 D;  3KFD I;  2NBT A;  5DU1 A;  4UY2 C;  2QJ9 C;  1KC4 A;  3U73 U;  1IKC A;  1IDL A;  1RGJ A;  4P7U A;  1CDS A;  1LJZ A;  2QC1 A;  3HH7 A;  1NOR A;  1NYU A;  1FSC A;  4AEA A;  2PJY B;  1W6B A;  1JE9 A;  2CTX A;  2K3G A;  1KBT A;  1HAA A;  1CVO A; 
#chains in the Genus database with same CATH homology
 1CRF A;  1IDH A;  2UWR A;  1CCQ A;  2GOO B;  2I9B E;  1CDQ A;  1HOY A;  3NH7 A;  1L4W A;  1IDG A;  1JBD A;  4QTI U;  1NXB A;  5DZ5 A;  2CDX A;  2FD6 U;  1KXI A;  3EBX A;  1TGX A;  1G6M A;  1TXA A;  2BHI A;  4EY8 B;  1ONJ A;  1FSS B;  1KBA A;  4XJJ A;  1PLO A;  2H64 B;  1UG4 A;  2MJY A;  1KU6 B;  4HQP F;  1F94 A;  4RUD A;  1LXG A;  2MUO A;  1LX5 B;  2X8B B;  1FRA A;  1TXB A;  1NYS A;  1ERG A;  2PJY C;  3BT1 U;  3NEQ A;  1FFJ A;  1NEA A;  1IQ9 A;  1ES7 B;  1CHV S;  2MUP A;  2GOO C;  3LAQ U;  1QKD A;  4BDT B;  1YWH A;  1CB9 A;  1CXO A;  2QJB C;  1I02 A;  1F8U B;  1HC9 B;  1CTX A;  3EVS C;  1MR6 A;  2H7Z B;  2L5S A;  5DO6 A;  3BT2 U;  4KSN A;  1FAS A;  2H8U A;  2MFA A;  1LXH A;  1HC9 A;  1LSI A;  2CRT A;  2CRS A;  4DO8 A;  1B41 B;  2N99 A;  4ZQY A;  2H7Z A;  3PLC A;  2H5F A;  1NTN A;  1COE A;  1KS6 A;  1NTX A;  1KBS A;  3QB4 B;  2J8B A;  1IJC A;  2H64 C;  1IK8 A;  1VB0 A;  2MJ0 A;  3ERA A;  1ZAD A;  1ERA A;  3U74 U;  5EBX A;  1REW C;  1RL5 A;  1KTZ B;  2HLQ A;  1KL8 A;  5IMY C;  1XT3 A;  2MJ4 A;  1FF4 A;  1TFS A;  1BTE A;  2UX2 A;  1CXN A;  4LFT A;  1DRS A;  1V6P A;  4BIK B;  1QKE A;  1M9Z A;  1IDI A;  3FEV A;  4OM5 A;  1COD A;  4OM4 A;  2H62 C;  4FAO C;  1S4Y A;  3VTS A;  2BTX A;  6EBX A;  2HLR A;  2ERA A;  2VLW A;  2QJA C;  2MHY A;  1QM7 A;  1CRE A;  2CCX A;  1H0J A;  2L03 A;  5IMT D;  2JVE A;  3NDS A;  1ABT A;  1HAJ A;  2LCR A;  1MAH F;  3KFD E;  4FAO E;  1BXP A;  2LA1 A;  1JGK A;  2ABX A;  2JQP A;  1KFH A;  4IYE A;  1CDT A;  2OFS A;  1CDR A;  2H62 D;  3KFD I;  2NBT A;  5DU1 A;  4UY2 C;  2QJ9 C;  1KC4 A;  3U73 U;  1IKC A;  1IDL A;  1RGJ A;  4P7U A;  1CDS A;  1LJZ A;  2QC1 A;  3HH7 A;  1NOR A;  1NYU A;  1FSC A;  4AEA A;  2PJY B;  1W6B A;  1JE9 A;  2CTX A;  2K3G A;  1KBT A;  1HAA A;  1CVO A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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