1JGKA

Solution structure of candoxin
Total Genus 3
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
3
sequence length
66
structure length
66
Chain Sequence
b'MKCKICNFDTCRAGELKVCASGEKYCFKESWREARGTRIERGCAATCPKGSVYGLYVLCCTTDDCN'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title SOLUTION STRUCTURE OF CANDOXIN, A REVERSIBLE, POSTSYNAPTIC NEUROTOXIN PURIFIED FROM THE VENOM OF BUNGARUS CANDIDUS (MALAYAN KRAIT)
rcsb
molecule keywords CANDOXIN
molecule tags Toxin
total genus 3
structure length 66
sequence length 66
ec nomenclature
pdb deposition date 2001-06-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00087 Toxin_TOLIP Snake toxin and toxin-like protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.60.10 Mainly Beta Ribbon CD59 CD59 1jgkA00
4HQPF 1KU6B 1KXIA 4BIKB 1TXAA 1S4YA 2NBTA 2CDXA 1IK8A 1LXHA 2H5FA 1KL8A 2GOOB 4OM5A 1NXBA 5IMYC 2MUOA 2MJ4A 1TFSA 1ES7B 1UG4A 2QJAC 5EBXA 5DU1A 4RUDA 5IMTD 1KS6A 1HAAA 4QTIU 1IDGA 1I02A 1RGJA 1JBDA 1CB9A 1CXNA 1CCQA 1CDSA 4P7UA 3BT2U 2MHYA 2MJYA 1IDLA 2GOOC 1CDRA 2HLRA 3EVSC 3KFDE 4XJJA 2ERAA 2FD6U 3NEQA 1TXBA 1HC9B 4DO8A 2H62D 2QJ9C 1NYUA 2JQPA 3EBXA 1YWHA 3FEVA 4UY2C 2CRTA 2BTXA 1CDTA 1HAJA 3QB4B 1FFJA 2ABXA 2VLWA 2H7ZB 2N99A 1FRAA 2MUPA 1KBTA 1ERAA 4IYEA 1CXOA 2UWRA 1XT3A 1BXPA 1FF4A 4FAOE 1NEAA 1V6PA 2H64B 2QJBC 1FSSB 2OFSA 3U74U 2CTXA 3HH7A 3VTSA 2CRSA 1JE9A 2H62C 1QM7A 2X8BB 1L4WA 1ABTA 1IQ9A 1HC9A 2JVEA 1B41B 1BTEA 1LXGA 1MAHF 4LFTA 1NTXA 1HOYA 1LSIA 1REWC 5DZ5A 4OM4A 1IKCA 3U73U 4FAOC 2H7ZA 1RL5A 3LAQU 1COEA 1KTZB 1H0JA 1QKEA 1NTNA 1CTXA 2H8UA 2LA1A 1VB0A 2H64C 3KFDI 1PLOA 1TGXA 1CHVS 4ZQYA 4EY8B 1CDQA 1IDIA 2PJYB 4AEAA 2BHIA 1KFHA 1DRSA 1ONJA 1W6BA 2I9BE 2L03A 1NYSA 1NORA 1QKDA 2J8BA 3ERAA 1KC4A 2LCRA 3NH7A 2K3GA 3NDSA 1FASA 5DO6A 1MR6A 2QC1A 1CVOA 1G6MA 1IDHA 2UX2A 1JGKA 1ZADA 1CRFA 3BT1U 1FSCA 1F94A 2L5SA 4BDTB 1M9ZA 3PLCA 2PJYC 2CCXA 1KBSA 2MJ0A 1ERGA 1CODA 1LX5B 2MFAA 1F8UB 2HLQA 1LJZA 1CREA 1KBAA 6EBXA 1IJCA
chains in the Genus database with same CATH superfamily
4HQPF 1KU6B 1KXIA 4BIKB 1TXAA 4KSNA 1S4YA 2NBTA 2CDXA 1IK8A 1LXHA 2H5FA 1KL8A 2GOOB 4OM5A 1NXBA 5IMYC 2MUOA 2MJ4A 1TFSA 1ES7B 1UG4A 2QJAC 5EBXA 5DU1A 4RUDA 5IMTD 1KS6A 1HAAA 4QTIU 1IDGA 1I02A 1RGJA 1JBDA 1CB9A 1CXNA 1CCQA 1CDSA 4P7UA 3BT2U 2MHYA 2MJYA 1IDLA 2GOOC 1CDRA 2HLRA 3EVSC 3KFDE 4XJJA 2ERAA 2FD6U 3NEQA 1TXBA 1HC9B 4DO8A 2H62D 2QJ9C 1NYUA 2JQPA 3EBXA 1YWHA 3FEVA 4UY2C 2CRTA 2BTXA 1CDTA 1HAJA 3QB4B 1FFJA 2ABXA 2VLWA 2H7ZB 2N99A 1FRAA 2MUPA 1KBTA 1ERAA 4IYEA 1CXOA 2UWRA 1XT3A 1BXPA 1FF4A 4FAOE 1NEAA 1V6PA 2H64B 2QJBC 1FSSB 2OFSA 3U74U 2CTXA 3HH7A 3VTSA 2CRSA 1JE9A 2H62C 1QM7A 2X8BB 1L4WA 1ABTA 1IQ9A 1HC9A 2JVEA 1B41B 1BTEA 1LXGA 1MAHF 4LFTA 1NTXA 1HOYA 1LSIA 1REWC 5DZ5A 4OM4A 1IKCA 3U73U 4FAOC 2H7ZA 1RL5A 3LAQU 1COEA 1KTZB 1H0JA 1QKEA 1NTNA 1CTXA 2H8UA 2LA1A 1VB0A 2H64C 3KFDI 1PLOA 1TGXA 1CHVS 4ZQYA 4EY8B 1CDQA 1IDIA 2PJYB 4AEAA 2BHIA 1KFHA 1DRSA 1ONJA 1W6BA 2I9BE 2L03A 1NYSA 1NORA 1QKDA 2J8BA 3ERAA 1KC4A 2LCRA 3NH7A 2K3GA 3NDSA 1FASA 5DO6A 1MR6A 2QC1A 1CVOA 1G6MA 1IDHA 2UX2A 1JGKA 1ZADA 1CRFA 3BT1U 1FSCA 1F94A 2L5SA 4BDTB 1M9ZA 3PLCA 2PJYC 2CCXA 1KBSA 2MJ0A 1ERGA 1CODA 1LX5B 2MFAA 1F8UB 2HLQA 1LJZA 1CREA 1KBAA 6EBXA 1IJCA
chains in the Genus database with same CATH topology
4HQPF 1KU6B 1KXIA 4BIKB 1TXAA 4KSNA 1S4YA 2NBTA 2CDXA 1IK8A 1LXHA 2H5FA 1KL8A 2GOOB 4OM5A 1NXBA 5IMYC 2MUOA 2MJ4A 1TFSA 1ES7B 1UG4A 2QJAC 5EBXA 5DU1A 4RUDA 5IMTD 1KS6A 1HAAA 4QTIU 1IDGA 1I02A 1RGJA 1JBDA 1CB9A 1CXNA 1CCQA 1CDSA 4P7UA 3BT2U 2MHYA 2MJYA 1IDLA 2GOOC 1CDRA 2HLRA 3EVSC 3KFDE 4XJJA 2ERAA 2FD6U 3NEQA 1TXBA 1HC9B 4DO8A 2H62D 2QJ9C 1NYUA 2JQPA 3EBXA 1YWHA 3FEVA 4UY2C 2CRTA 2BTXA 1CDTA 1HAJA 3QB4B 1FFJA 2ABXA 2VLWA 2H7ZB 2N99A 1FRAA 2MUPA 1KBTA 1ERAA 4IYEA 1CXOA 2UWRA 1XT3A 1BXPA 1FF4A 4FAOE 1NEAA 1V6PA 2H64B 2QJBC 1FSSB 2OFSA 3U74U 2CTXA 3HH7A 3VTSA 2CRSA 1JE9A 2H62C 1QM7A 2X8BB 1L4WA 1ABTA 1IQ9A 1HC9A 2JVEA 1B41B 1BTEA 1LXGA 1MAHF 4LFTA 1NTXA 1HOYA 1LSIA 1REWC 5DZ5A 4OM4A 1IKCA 3U73U 4FAOC 2H7ZA 1RL5A 3LAQU 1COEA 1KTZB 1H0JA 1QKEA 1NTNA 1CTXA 2H8UA 2LA1A 1VB0A 2H64C 3KFDI 1PLOA 1TGXA 1CHVS 4ZQYA 4EY8B 1CDQA 1IDIA 2PJYB 4AEAA 2BHIA 1KFHA 1DRSA 1ONJA 1W6BA 2I9BE 2L03A 1NYSA 1NORA 1QKDA 2J8BA 3ERAA 1KC4A 2LCRA 3NH7A 2K3GA 3NDSA 1FASA 5DO6A 1MR6A 2QC1A 1CVOA 1G6MA 1IDHA 2UX2A 1JGKA 1ZADA 1CRFA 3BT1U 1FSCA 1F94A 2L5SA 4BDTB 1M9ZA 3PLCA 2PJYC 2CCXA 1KBSA 2MJ0A 1ERGA 1CODA 1LX5B 2MFAA 1F8UB 2HLQA 1LJZA 1CREA 1KBAA 6EBXA 1IJCA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4HQP F;  1KU6 B;  1KXI A;  4BIK B;  1TXA A;  1S4Y A;  2NBT A;  2CDX A;  1IK8 A;  1LXH A;  2H5F A;  1KL8 A;  2GOO B;  4OM5 A;  1NXB A;  5IMY C;  2MUO A;  2MJ4 A;  1TFS A;  1ES7 B;  1UG4 A;  2QJA C;  5EBX A;  5DU1 A;  4RUD A;  5IMT D;  1KS6 A;  1HAA A;  4QTI U;  1IDG A;  1I02 A;  1RGJ A;  1JBD A;  1CB9 A;  1CXN A;  1CCQ A;  1CDS A;  4P7U A;  3BT2 U;  2MHY A;  2MJY A;  1IDL A;  2GOO C;  1CDR A;  2HLR A;  3EVS C;  3KFD E;  4XJJ A;  2ERA A;  2FD6 U;  3NEQ A;  1TXB A;  1HC9 B;  4DO8 A;  2H62 D;  2QJ9 C;  1NYU A;  2JQP A;  3EBX A;  1YWH A;  3FEV A;  4UY2 C;  2CRT A;  2BTX A;  1CDT A;  1HAJ A;  3QB4 B;  1FFJ A;  2ABX A;  2VLW A;  2H7Z B;  2N99 A;  1FRA A;  2MUP A;  1KBT A;  1ERA A;  4IYE A;  1CXO A;  2UWR A;  1XT3 A;  1BXP A;  1FF4 A;  4FAO E;  1NEA A;  1V6P A;  2H64 B;  2QJB C;  1FSS B;  2OFS A;  3U74 U;  2CTX A;  3HH7 A;  3VTS A;  2CRS A;  1JE9 A;  2H62 C;  1QM7 A;  2X8B B;  1L4W A;  1ABT A;  1IQ9 A;  1HC9 A;  2JVE A;  1B41 B;  1BTE A;  1LXG A;  1MAH F;  4LFT A;  1NTX A;  1HOY A;  1LSI A;  1REW C;  5DZ5 A;  4OM4 A;  1IKC A;  3U73 U;  4FAO C;  2H7Z A;  1RL5 A;  3LAQ U;  1COE A;  1KTZ B;  1H0J A;  1QKE A;  1NTN A;  1CTX A;  2H8U A;  2LA1 A;  1VB0 A;  2H64 C;  3KFD I;  1PLO A;  1TGX A;  1CHV S;  4ZQY A;  4EY8 B;  1CDQ A;  1IDI A;  2PJY B;  4AEA A;  2BHI A;  1KFH A;  1DRS A;  1ONJ A;  1W6B A;  2I9B E;  2L03 A;  1NYS A;  1NOR A;  1QKD A;  2J8B A;  3ERA A;  1KC4 A;  2LCR A;  3NH7 A;  2K3G A;  3NDS A;  1FAS A;  5DO6 A;  1MR6 A;  2QC1 A;  1CVO A;  1G6M A;  1IDH A;  2UX2 A;  1JGK A;  1ZAD A;  1CRF A;  3BT1 U;  1FSC A;  1F94 A;  2L5S A;  4BDT B;  1M9Z A;  3PLC A;  2PJY C;  2CCX A;  1KBS A;  2MJ0 A;  1ERG A;  1COD A;  1LX5 B;  2MFA A;  1F8U B;  2HLQ A;  1LJZ A;  1CRE A;  1KBA A;  6EBX A;  1IJC A; 
#chains in the Genus database with same CATH topology
 4HQP F;  1KU6 B;  1KXI A;  4BIK B;  1TXA A;  4KSN A;  1S4Y A;  2NBT A;  2CDX A;  1IK8 A;  1LXH A;  2H5F A;  1KL8 A;  2GOO B;  4OM5 A;  1NXB A;  5IMY C;  2MUO A;  2MJ4 A;  1TFS A;  1ES7 B;  1UG4 A;  2QJA C;  5EBX A;  5DU1 A;  4RUD A;  5IMT D;  1KS6 A;  1HAA A;  4QTI U;  1IDG A;  1I02 A;  1RGJ A;  1JBD A;  1CB9 A;  1CXN A;  1CCQ A;  1CDS A;  4P7U A;  3BT2 U;  2MHY A;  2MJY A;  1IDL A;  2GOO C;  1CDR A;  2HLR A;  3EVS C;  3KFD E;  4XJJ A;  2ERA A;  2FD6 U;  3NEQ A;  1TXB A;  1HC9 B;  4DO8 A;  2H62 D;  2QJ9 C;  1NYU A;  2JQP A;  3EBX A;  1YWH A;  3FEV A;  4UY2 C;  2CRT A;  2BTX A;  1CDT A;  1HAJ A;  3QB4 B;  1FFJ A;  2ABX A;  2VLW A;  2H7Z B;  2N99 A;  1FRA A;  2MUP A;  1KBT A;  1ERA A;  4IYE A;  1CXO A;  2UWR A;  1XT3 A;  1BXP A;  1FF4 A;  4FAO E;  1NEA A;  1V6P A;  2H64 B;  2QJB C;  1FSS B;  2OFS A;  3U74 U;  2CTX A;  3HH7 A;  3VTS A;  2CRS A;  1JE9 A;  2H62 C;  1QM7 A;  2X8B B;  1L4W A;  1ABT A;  1IQ9 A;  1HC9 A;  2JVE A;  1B41 B;  1BTE A;  1LXG A;  1MAH F;  4LFT A;  1NTX A;  1HOY A;  1LSI A;  1REW C;  5DZ5 A;  4OM4 A;  1IKC A;  3U73 U;  4FAO C;  2H7Z A;  1RL5 A;  3LAQ U;  1COE A;  1KTZ B;  1H0J A;  1QKE A;  1NTN A;  1CTX A;  2H8U A;  2LA1 A;  1VB0 A;  2H64 C;  3KFD I;  1PLO A;  1TGX A;  1CHV S;  4ZQY A;  4EY8 B;  1CDQ A;  1IDI A;  2PJY B;  4AEA A;  2BHI A;  1KFH A;  1DRS A;  1ONJ A;  1W6B A;  2I9B E;  2L03 A;  1NYS A;  1NOR A;  1QKD A;  2J8B A;  3ERA A;  1KC4 A;  2LCR A;  3NH7 A;  2K3G A;  3NDS A;  1FAS A;  5DO6 A;  1MR6 A;  2QC1 A;  1CVO A;  1G6M A;  1IDH A;  2UX2 A;  1JGK A;  1ZAD A;  1CRF A;  3BT1 U;  1FSC A;  1F94 A;  2L5S A;  4BDT B;  1M9Z A;  3PLC A;  2PJY C;  2CCX A;  1KBS A;  2MJ0 A;  1ERG A;  1COD A;  1LX5 B;  2MFA A;  1F8U B;  2HLQ A;  1LJZ A;  1CRE A;  1KBA A;  6EBX A;  1IJC A; 
#chains in the Genus database with same CATH homology
 4HQP F;  1KU6 B;  1KXI A;  4BIK B;  1TXA A;  4KSN A;  1S4Y A;  2NBT A;  2CDX A;  1IK8 A;  1LXH A;  2H5F A;  1KL8 A;  2GOO B;  4OM5 A;  1NXB A;  5IMY C;  2MUO A;  2MJ4 A;  1TFS A;  1ES7 B;  1UG4 A;  2QJA C;  5EBX A;  5DU1 A;  4RUD A;  5IMT D;  1KS6 A;  1HAA A;  4QTI U;  1IDG A;  1I02 A;  1RGJ A;  1JBD A;  1CB9 A;  1CXN A;  1CCQ A;  1CDS A;  4P7U A;  3BT2 U;  2MHY A;  2MJY A;  1IDL A;  2GOO C;  1CDR A;  2HLR A;  3EVS C;  3KFD E;  4XJJ A;  2ERA A;  2FD6 U;  3NEQ A;  1TXB A;  1HC9 B;  4DO8 A;  2H62 D;  2QJ9 C;  1NYU A;  2JQP A;  3EBX A;  1YWH A;  3FEV A;  4UY2 C;  2CRT A;  2BTX A;  1CDT A;  1HAJ A;  3QB4 B;  1FFJ A;  2ABX A;  2VLW A;  2H7Z B;  2N99 A;  1FRA A;  2MUP A;  1KBT A;  1ERA A;  4IYE A;  1CXO A;  2UWR A;  1XT3 A;  1BXP A;  1FF4 A;  4FAO E;  1NEA A;  1V6P A;  2H64 B;  2QJB C;  1FSS B;  2OFS A;  3U74 U;  2CTX A;  3HH7 A;  3VTS A;  2CRS A;  1JE9 A;  2H62 C;  1QM7 A;  2X8B B;  1L4W A;  1ABT A;  1IQ9 A;  1HC9 A;  2JVE A;  1B41 B;  1BTE A;  1LXG A;  1MAH F;  4LFT A;  1NTX A;  1HOY A;  1LSI A;  1REW C;  5DZ5 A;  4OM4 A;  1IKC A;  3U73 U;  4FAO C;  2H7Z A;  1RL5 A;  3LAQ U;  1COE A;  1KTZ B;  1H0J A;  1QKE A;  1NTN A;  1CTX A;  2H8U A;  2LA1 A;  1VB0 A;  2H64 C;  3KFD I;  1PLO A;  1TGX A;  1CHV S;  4ZQY A;  4EY8 B;  1CDQ A;  1IDI A;  2PJY B;  4AEA A;  2BHI A;  1KFH A;  1DRS A;  1ONJ A;  1W6B A;  2I9B E;  2L03 A;  1NYS A;  1NOR A;  1QKD A;  2J8B A;  3ERA A;  1KC4 A;  2LCR A;  3NH7 A;  2K3G A;  3NDS A;  1FAS A;  5DO6 A;  1MR6 A;  2QC1 A;  1CVO A;  1G6M A;  1IDH A;  2UX2 A;  1JGK A;  1ZAD A;  1CRF A;  3BT1 U;  1FSC A;  1F94 A;  2L5S A;  4BDT B;  1M9Z A;  3PLC A;  2PJY C;  2CCX A;  1KBS A;  2MJ0 A;  1ERG A;  1COD A;  1LX5 B;  2MFA A;  1F8U B;  2HLQ A;  1LJZ A;  1CRE A;  1KBA A;  6EBX A;  1IJC A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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