1JJ2H

Fully refined crystal structure of the haloarcula marismortui large ribosomal subunit at 2.4 angstrom resolution
Total Genus 28
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
28
sequence length
167
structure length
156
Chain Sequence
KPGAMYRNSSKPAYTRREYISGIPGKKIAQFDMGNNGAGPTYPAQVELVVEKPVQIRHNALEAARVAANRYVQNSGAAANYKFRIRKFPFHVIRENKDGMRAPFGKPVGTAARVHGANHIFIAWVNPDPNVEEAWRRAKMKVTPTINIDSSPAGNA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ribosome
molecule keywords 23S RRNA
publication title The kink-turn: a new RNA secondary structure motif.
pubmed doi rcsb
total genus 28
structure length 156
sequence length 167
ec nomenclature
pdb deposition date 2001-07-03
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.1170.10 Alpha Beta Alpha-Beta Complex Aldehyde Oxidoreductase; domain 3 Ribosomal protein L10e/L16 1jj2H00
2QEXH 3PIOJ 3PIPJ 1JJ2H 1QVGH 1VQLH 3CCEH 3CXCH 2OTLH 3CCLH 3G71H 3I55H 3CCMH 3CC7H 1VQKH 1W2BH 5GAEN 4WFNJ 1VQ4H 2ZJRJ 1Q81J 1YI2H 1WKIA 2ZJQJ 4IOCJ 2QA4H 4IO9J 1VQ8H 4WF9J 4UY8M 1YJNH 1Y69K 3CCVH 5GAHN 1VQOH 1K73J 5GAGN 4WCEJ 5MLCO 3CC4H 5HL7J 1YIJH 2PA2A 1K9MJ 4IOAJ 3CCSH 1S72H 5JVHJ 5GADN 5H1SO 5DM7J 3CCRH 2OTJH 3G6EH 5JVGJ 1VQ5H 3CC2H 3J7ZM 3CCJH 1VQ7H 1Q86J 1VQ9H 3CCUH 3CMEH 3CCQH 1VQNH 1M1KJ 3I56H 1Q7YJ 4WFBJ 1N8RJ 1VQPH 1QVFH 1VQMH 1YHQH 5DM6J 3DLLJ 4WFAJ 1VQ6H 1KD1J 1KC8J 1M90J 1K8AJ 1KQSH 2ZJPJ 3CD6H 1YJWH 1Q82J 3CF5J 3G4SH 3CMAH 3OW2H 4U67J 3CPWH 5AN9F 1NJIJ 1YITH 1YJ9H
chains in the Genus database with same CATH superfamily
2W54B 4I9AA 2QEXH 3PIOJ 3BIIE 3PIPJ 1JJ2H 1QVGH 1N60B 1VQLH 2DSJA 1V97A 5EP8A 3VMMA 3CCEH 3NRZC 4US8A 5MPOC 2B7PA 3CXCH 1N62B 3TQVA 2OTLH 1QPNA 4YEKA 1DGJA 2B7NA 3NVWC 3CCLH 3G71H 1SB3A 1UOUA 3I55H 3FAHA 1FFVB 1JRPB 5HUOA 4AP8A 2QIEA 3CCMH 3CC7H 3NS1C 1VQKH 1W2BH 3EUB4 5GAEN 4WFNJ 1WYGA 3NVZC 1N61B 1VQ4H 2ZJRJ 1O4UA 3AN1A 1FO4A 1Q81J 1VDVA 1YI2H 1WKIA 2W3RB 2ZJQJ 4XR5A 4IOCJ 3B9JC 2QA4H 2W55B 3C2RA 5AYXA 1QAPA 4IO9J 3C2FA 1VQ8H 4WF9J 1FM0E 1QPOA 4UY8M 3L0GA 4GA6A 2I1OA 1YJNH 1Y69K 3AM9A 4LHMA 3WNZA 1FIQC 3CCVH 5GAHN 1VQOH 3C2VA 1K73J 1N5WB 3ETRC 5GAGN 4WCEJ 3L4PA 1FFUB 1SIJA 3C2OA 5MLCO 3NVVC 3CC4H 5HL7J 1YIJH 1JROB 1ZXIB 2JBMA 2PA2A 2WP4A 1K9MJ 1NVJA 3WO1A 3SR6C 4IOAJ 4KWWA 3CCSH 1S72H 5AYYA 5JVHJ 5GADN 5H1SO 3GNNA 5DM7J 1BRWA 3CCRH 2OTJH 3G6EH 5JVGJ 2WK6A 5AYZA 4C7YA 4EADA 1VQ5H 3PAJA 3CC2H 2Q5WE 3J7ZM 3CCJH 2OMDA 1VQ7H 1Q86J 1QPRA 1VQ9H 5EY3A 3WO0A 3CCUH 3CMEH 3CCQH 3FC4A 1VQNH 2J0FA 1M1KJ 3H5QA 4GA4A 3I56H 4ZOHA 1Q7YJ 2E3TA 3C2EA 1AZYA 4WFBJ 1N8RJ 4X46A 1VQPH 1NVIE 1QVFH 1QPQA 1VQMH 4KWVA 1X1OA 1YHQH 1YTEA 1RM6A 2I14A 1OTPA 4GA5A 5DM6J 4EAFA 1N5XA 5HULA 4C80A 3NVYC 3DLLJ 4WFAJ 1VQ6H 1N63B 1KD1J 1KC8J 1M90J 1K8AJ 1YTKA 1KQSH 2ZJPJ 3CD6H 1YJWH 3RPFA 1Q82J 4C7ZA 3CF5J 1FMAE 3G4SH 4YYYA 2WK5A 3AMZA 1VLBA 3CMAH 2TPTA 4U67J 2B7QA 3OW2H 3CPWH 5AN9F 4USAA 1NJIJ 1YTDA 1YITH 4US9A 5HUPA 1YJ9H 2W3SB
chains in the Genus database with same CATH topology
2QEXH 3PIOJ 3PIPJ 1JJ2H 1QVGH 1VQLH 3CCEH 3CXCH 2OTLH 3CCLH 3G71H 3I55H 3CCMH 3CC7H 1VQKH 1W2BH 5GAEN 4WFNJ 1VQ4H 2ZJRJ 1Q81J 1YI2H 1WKIA 2ZJQJ 4IOCJ 2QA4H 4IO9J 1VQ8H 4WF9J 4UY8M 1YJNH 1Y69K 3CCVH 5GAHN 1VQOH 1K73J 5GAGN 4WCEJ 5MLCO 3CC4H 5HL7J 1YIJH 2PA2A 1K9MJ 4IOAJ 3CCSH 1S72H 5JVHJ 5GADN 5H1SO 5DM7J 3CCRH 2OTJH 3G6EH 5JVGJ 1VQ5H 3CC2H 3J7ZM 3CCJH 1VQ7H 1Q86J 1VQ9H 3CCUH 3CMEH 3CCQH 1VQNH 1M1KJ 3I56H 1Q7YJ 4WFBJ 1N8RJ 1VQPH 1QVFH 1VQMH 1YHQH 5DM6J 3DLLJ 4WFAJ 1VQ6H 1KD1J 1KC8J 1M90J 1K8AJ 1KQSH 2ZJPJ 3CD6H 1YJWH 1Q82J 3CF5J 3G4SH 3CMAH 3OW2H 4U67J 3CPWH 5AN9F 1NJIJ 1YITH 1YJ9H
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2QEX H;  3PIO J;  3PIP J;  1JJ2 H;  1QVG H;  1VQL H;  3CCE H;  3CXC H;  2OTL H;  3CCL H;  3G71 H;  3I55 H;  3CCM H;  3CC7 H;  1VQK H;  1W2B H;  5GAE N;  4WFN J;  1VQ4 H;  2ZJR J;  1Q81 J;  1YI2 H;  1WKI A;  2ZJQ J;  4IOC J;  2QA4 H;  4IO9 J;  1VQ8 H;  4WF9 J;  4UY8 M;  1YJN H;  1Y69 K;  3CCV H;  5GAH N;  1VQO H;  1K73 J;  5GAG N;  4WCE J;  5MLC O;  3CC4 H;  5HL7 J;  1YIJ H;  2PA2 A;  1K9M J;  4IOA J;  3CCS H;  1S72 H;  5JVH J;  5GAD N;  5H1S O;  5DM7 J;  3CCR H;  2OTJ H;  3G6E H;  5JVG J;  1VQ5 H;  3CC2 H;  3J7Z M;  3CCJ H;  1VQ7 H;  1Q86 J;  1VQ9 H;  3CCU H;  3CME H;  3CCQ H;  1VQN H;  1M1K J;  3I56 H;  1Q7Y J;  4WFB J;  1N8R J;  1VQP H;  1QVF H;  1VQM H;  1YHQ H;  5DM6 J;  3DLL J;  4WFA J;  1VQ6 H;  1KD1 J;  1KC8 J;  1M90 J;  1K8A J;  1KQS H;  2ZJP J;  3CD6 H;  1YJW H;  1Q82 J;  3CF5 J;  3G4S H;  3CMA H;  3OW2 H;  4U67 J;  3CPW H;  5AN9 F;  1NJI J;  1YIT H;  1YJ9 H; 
#chains in the Genus database with same CATH topology
 2W54 B;  4I9A A;  2QEX H;  3PIO J;  3BII E;  3PIP J;  1JJ2 H;  1QVG H;  1N60 B;  1VQL H;  2DSJ A;  1V97 A;  5EP8 A;  3VMM A;  3CCE H;  3NRZ C;  4US8 A;  5MPO C;  2B7P A;  3CXC H;  1N62 B;  3TQV A;  2OTL H;  1QPN A;  4YEK A;  1DGJ A;  2B7N A;  3NVW C;  3CCL H;  3G71 H;  1SB3 A;  1UOU A;  3I55 H;  3FAH A;  1FFV B;  1JRP B;  5HUO A;  4AP8 A;  2QIE A;  3CCM H;  3CC7 H;  3NS1 C;  1VQK H;  1W2B H;  3EUB 4;  5GAE N;  4WFN J;  1WYG A;  3NVZ C;  1N61 B;  1VQ4 H;  2ZJR J;  1O4U A;  3AN1 A;  1FO4 A;  1Q81 J;  1VDV A;  1YI2 H;  1WKI A;  2W3R B;  2ZJQ J;  4XR5 A;  4IOC J;  3B9J C;  2QA4 H;  2W55 B;  3C2R A;  5AYX A;  1QAP A;  4IO9 J;  3C2F A;  1VQ8 H;  4WF9 J;  1FM0 E;  1QPO A;  4UY8 M;  3L0G A;  4GA6 A;  2I1O A;  1YJN H;  1Y69 K;  3AM9 A;  4LHM A;  3WNZ A;  1FIQ C;  3CCV H;  5GAH N;  1VQO H;  3C2V A;  1K73 J;  1N5W B;  3ETR C;  5GAG N;  4WCE J;  3L4P A;  1FFU B;  1SIJ A;  3C2O A;  5MLC O;  3NVV C;  3CC4 H;  5HL7 J;  1YIJ H;  1JRO B;  1ZXI B;  2JBM A;  2PA2 A;  2WP4 A;  1K9M J;  1NVJ A;  3WO1 A;  3SR6 C;  4IOA J;  4KWW A;  3CCS H;  1S72 H;  5AYY A;  5JVH J;  5GAD N;  5H1S O;  3GNN A;  5DM7 J;  1BRW A;  3CCR H;  2OTJ H;  3G6E H;  5JVG J;  2WK6 A;  5AYZ A;  4C7Y A;  4EAD A;  1VQ5 H;  3PAJ A;  3CC2 H;  2Q5W E;  3J7Z M;  3CCJ H;  2OMD A;  1VQ7 H;  1Q86 J;  1QPR A;  1VQ9 H;  5EY3 A;  3WO0 A;  3CCU H;  3CME H;  3CCQ H;  3FC4 A;  1VQN H;  2J0F A;  1M1K J;  3H5Q A;  4GA4 A;  3I56 H;  4ZOH A;  1Q7Y J;  2E3T A;  3C2E A;  1AZY A;  4WFB J;  1N8R J;  4X46 A;  1VQP H;  1NVI E;  1QVF H;  1QPQ A;  1VQM H;  4KWV A;  1X1O A;  1YHQ H;  1YTE A;  1RM6 A;  2I14 A;  1OTP A;  4GA5 A;  5DM6 J;  4EAF A;  1N5X A;  5HUL A;  4C80 A;  3NVY C;  3DLL J;  4WFA J;  1VQ6 H;  1N63 B;  1KD1 J;  1KC8 J;  1M90 J;  1K8A J;  1YTK A;  1KQS H;  2ZJP J;  3CD6 H;  1YJW H;  3RPF A;  1Q82 J;  4C7Z A;  3CF5 J;  1FMA E;  3G4S H;  4YYY A;  2WK5 A;  3AMZ A;  1VLB A;  3CMA H;  2TPT A;  4U67 J;  2B7Q A;  3OW2 H;  3CPW H;  5AN9 F;  4USA A;  1NJI J;  1YTD A;  1YIT H;  4US9 A;  5HUP A;  1YJ9 H;  2W3S B; 
#chains in the Genus database with same CATH homology
 2QEX H;  3PIO J;  3PIP J;  1JJ2 H;  1QVG H;  1VQL H;  3CCE H;  3CXC H;  2OTL H;  3CCL H;  3G71 H;  3I55 H;  3CCM H;  3CC7 H;  1VQK H;  1W2B H;  5GAE N;  4WFN J;  1VQ4 H;  2ZJR J;  1Q81 J;  1YI2 H;  1WKI A;  2ZJQ J;  4IOC J;  2QA4 H;  4IO9 J;  1VQ8 H;  4WF9 J;  4UY8 M;  1YJN H;  1Y69 K;  3CCV H;  5GAH N;  1VQO H;  1K73 J;  5GAG N;  4WCE J;  5MLC O;  3CC4 H;  5HL7 J;  1YIJ H;  2PA2 A;  1K9M J;  4IOA J;  3CCS H;  1S72 H;  5JVH J;  5GAD N;  5H1S O;  5DM7 J;  3CCR H;  2OTJ H;  3G6E H;  5JVG J;  1VQ5 H;  3CC2 H;  3J7Z M;  3CCJ H;  1VQ7 H;  1Q86 J;  1VQ9 H;  3CCU H;  3CME H;  3CCQ H;  1VQN H;  1M1K J;  3I56 H;  1Q7Y J;  4WFB J;  1N8R J;  1VQP H;  1QVF H;  1VQM H;  1YHQ H;  5DM6 J;  3DLL J;  4WFA J;  1VQ6 H;  1KD1 J;  1KC8 J;  1M90 J;  1K8A J;  1KQS H;  2ZJP J;  3CD6 H;  1YJW H;  1Q82 J;  3CF5 J;  3G4S H;  3CMA H;  3OW2 H;  4U67 J;  3CPW H;  5AN9 F;  1NJI J;  1YIT H;  1YJ9 H; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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