1JJ2Q

Fully refined crystal structure of the haloarcula marismortui large ribosomal subunit at 2.4 angstrom resolution
Total Genus 38
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
38
sequence length
150
structure length
150
Chain Sequence
GISYSVEADPDTTAKAMLRERQMSFKHSKAIAREIKGKTAGEAVDYLEAVIEGDQPVPFKQHNSGVGHKSKVDGWDAGRYPEKASKAFLDLLENAVGNADHQGFDGEAMTIKHVAAHKVGEQQGRKPRAMGRASAWNSPQVDVELILEEP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ribosome
molecule keywords 23S RRNA
publication title The kink-turn: a new RNA secondary structure motif.
pubmed doi rcsb
total genus 38
structure length 150
sequence length 150
ec nomenclature
pdb deposition date 2001-07-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
Q PF00237 Ribosomal_L22 Ribosomal protein L22p/L17e
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.470.10 Alpha Beta Alpha-Beta Complex Ribosomal Protein L22; Chain A Ribosomal protein L22/L17 1jj2Q00
1Q82S 1YIJR 1VQ9R 3CCJR 5JVGP 1K8AS 5H1SU 1KD1S 2QEXR 3CC2R 1NJIS 3G71R 4UY8S 4IO9P 4WFNP 1VQ4R 1VQ5R 1YJNR 1YJ9R 1VQKR 3CCER 2ZJRP 5DM7P 1S72R 3CCMR 5DM6P 1K73S 2ZJQP 1I4JA 4IOCP 1VQPR 1YJWR 1K9MS 4WFBP 1KQSQ 3CPWQ 1YHQR 1M90S 3PIOP 1N8RS 5JVHP 3I56R 1Q86S 1VQNR 3CCLR 3CCRR 5HL7P 1VQ8R 3CCQR 1QVFQ 3CC4R 4V19W 2ZJPP 1BXEA 4WCEP 1JJ2Q 3CD6R 3DLLP 5GADT 1VQLR 3CXCQ 3CC7R 3J7YT 3CMER 5GAHT 5GAGT 1VQ7R 3CCVR 1VQMR 5GAET 4IOAP 1YITR 5MLCU 1QVGQ 3J7ZS 3CF5P 3G6ER 4WF9P 1VQOR 2OTLR 1Q7YS 2OTJR 3CCSR 3CCUR 1YI2R 3PIPP 3G4SR 1Q81S 1W2BQ 1M1KS 4U67P 3I55R 2QA4R 1VQ6R 3CMAR 1KC8S 4WFAP 3OW2Q
chains in the Genus database with same CATH superfamily
1Q82S 4MRTA 1YIJR 1VQ9R 3CCJR 5JVGP 2WASB 2JCAA 1K8AS 3HYKA 2WDYA 1QR0A 5H1SU 1KD1S 2QEXR 3CC2R 1NJIS 3G71R 4UY8S 2WATA 4IO9P 4WFNP 1VQ4R 1VQ5R 1YJNR 2QG8A 1YJ9R 1VQKR 2WDOA 3CCER 2ZJRP 5DM7P 5DM6P 3CCMR 1S72R 1K73S 2ZJQP 4JM7A 1I4JA 2BDDA 4IOCP 1VQPR 2CG5A 1YJWR 1K9MS 4WFBP 1F7TA 1KQSQ 3CPWQ 1YHQR 3NE1A 1M90S 1F7LA 3PIOP 1N8RS 5JVHP 4DXEA 3I56R 1Q86S 3QMNA 3NE9A 1VQNR 3CCLR 1NBWA 2D0PA 3CCRR 5HL7P 1VQ8R 3CCQR 1QVFQ 3CC4R 2C43A 4V19W 2ZJPP 1BXEA 4WCEP 1JJ2Q 3CD6R 3DLLP 5GADT 1VQLR 3CXCQ 3CC7R 2WDSA 3CMER 3H7QA 5GAHT 1FTHA 1FTEA 5GAGT 1VQ7R 3CCVR 2BYDA 1VQMR 5GAET 4IOAP 1YITR 5MLCU 1QVGQ 3J7ZS 3CF5P 3GWMA 4HC6A 3G6ER 2JBZA 4WF9P 1VQOR 2OTLR 1Q7YS 2OTJR 3CCSR 3CCUR 1YI2R 3PIPP 3HQJA 3NE3B 3NFDA 3G4SR 1Q81S 1W2BQ 1M1KS 2D0OA 5CXDA 1F80A 2WASA 4U67P 3I55R 2QA4R 1VQ6R 3CMAR 5CMOA 1FTFA 1KC8S 3OW2Q 4WFAP 3J7YT
chains in the Genus database with same CATH topology
1Q82S 1YIJR 1VQ9R 3CCJR 5JVGP 1K8AS 5H1SU 1KD1S 2QEXR 3CC2R 1NJIS 3G71R 4UY8S 4IO9P 4WFNP 1VQ4R 1VQ5R 1YJNR 1YJ9R 1VQKR 3CCER 2ZJRP 5DM7P 1S72R 3CCMR 5DM6P 1K73S 2ZJQP 1I4JA 4IOCP 1VQPR 1YJWR 1K9MS 4WFBP 1KQSQ 3CPWQ 1YHQR 1M90S 3PIOP 1N8RS 5JVHP 3I56R 1Q86S 1VQNR 3CCLR 3CCRR 5HL7P 1VQ8R 3CCQR 1QVFQ 3CC4R 4V19W 2ZJPP 1BXEA 4WCEP 1JJ2Q 3CD6R 3DLLP 5GADT 1VQLR 3CXCQ 3CC7R 3J7YT 3CMER 5GAHT 5GAGT 1VQ7R 3CCVR 1VQMR 5GAET 4IOAP 1YITR 5MLCU 1QVGQ 3J7ZS 3CF5P 3G6ER 4WF9P 1VQOR 2OTLR 1Q7YS 2OTJR 3CCSR 3CCUR 1YI2R 3PIPP 3G4SR 1Q81S 1W2BQ 1M1KS 4U67P 3I55R 2QA4R 1VQ6R 3CMAR 1KC8S 4WFAP 3OW2Q
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1Q82 S;  1YIJ R;  1VQ9 R;  3CCJ R;  5JVG P;  1K8A S;  5H1S U;  1KD1 S;  2QEX R;  3CC2 R;  1NJI S;  3G71 R;  4UY8 S;  4IO9 P;  4WFN P;  1VQ4 R;  1VQ5 R;  1YJN R;  1YJ9 R;  1VQK R;  3CCE R;  2ZJR P;  5DM7 P;  1S72 R;  3CCM R;  5DM6 P;  1K73 S;  2ZJQ P;  1I4J A;  4IOC P;  1VQP R;  1YJW R;  1K9M S;  4WFB P;  1KQS Q;  3CPW Q;  1YHQ R;  1M90 S;  3PIO P;  1N8R S;  5JVH P;  3I56 R;  1Q86 S;  1VQN R;  3CCL R;  3CCR R;  5HL7 P;  1VQ8 R;  3CCQ R;  1QVF Q;  3CC4 R;  4V19 W;  2ZJP P;  1BXE A;  4WCE P;  1JJ2 Q;  3CD6 R;  3DLL P;  5GAD T;  1VQL R;  3CXC Q;  3CC7 R;  3J7Y T;  3CME R;  5GAH T;  5GAG T;  1VQ7 R;  3CCV R;  1VQM R;  5GAE T;  4IOA P;  1YIT R;  5MLC U;  1QVG Q;  3J7Z S;  3CF5 P;  3G6E R;  4WF9 P;  1VQO R;  2OTL R;  1Q7Y S;  2OTJ R;  3CCS R;  3CCU R;  1YI2 R;  3PIP P;  3G4S R;  1Q81 S;  1W2B Q;  1M1K S;  4U67 P;  3I55 R;  2QA4 R;  1VQ6 R;  3CMA R;  1KC8 S;  4WFA P;  3OW2 Q; 
#chains in the Genus database with same CATH topology
 1Q82 S;  4MRT A;  1YIJ R;  1VQ9 R;  3CCJ R;  5JVG P;  2WAS B;  2JCA A;  1K8A S;  3HYK A;  2WDY A;  1QR0 A;  5H1S U;  1KD1 S;  2QEX R;  3CC2 R;  1NJI S;  3G71 R;  4UY8 S;  2WAT A;  4IO9 P;  4WFN P;  1VQ4 R;  1VQ5 R;  1YJN R;  2QG8 A;  1YJ9 R;  1VQK R;  2WDO A;  3CCE R;  2ZJR P;  5DM7 P;  5DM6 P;  3CCM R;  1S72 R;  1K73 S;  2ZJQ P;  4JM7 A;  1I4J A;  2BDD A;  4IOC P;  1VQP R;  2CG5 A;  1YJW R;  1K9M S;  4WFB P;  1F7T A;  1KQS Q;  3CPW Q;  1YHQ R;  3NE1 A;  1M90 S;  1F7L A;  3PIO P;  1N8R S;  5JVH P;  4DXE A;  3I56 R;  1Q86 S;  3QMN A;  3NE9 A;  1VQN R;  3CCL R;  1NBW A;  2D0P A;  3CCR R;  5HL7 P;  1VQ8 R;  3CCQ R;  1QVF Q;  3CC4 R;  2C43 A;  4V19 W;  2ZJP P;  1BXE A;  4WCE P;  1JJ2 Q;  3CD6 R;  3DLL P;  5GAD T;  1VQL R;  3CXC Q;  3CC7 R;  2WDS A;  3CME R;  3H7Q A;  5GAH T;  1FTH A;  1FTE A;  5GAG T;  1VQ7 R;  3CCV R;  2BYD A;  1VQM R;  5GAE T;  4IOA P;  1YIT R;  5MLC U;  1QVG Q;  3J7Z S;  3CF5 P;  3GWM A;  4HC6 A;  3G6E R;  2JBZ A;  4WF9 P;  1VQO R;  2OTL R;  1Q7Y S;  2OTJ R;  3CCS R;  3CCU R;  1YI2 R;  3PIP P;  3HQJ A;  3NE3 B;  3NFD A;  3G4S R;  1Q81 S;  1W2B Q;  1M1K S;  2D0O A;  5CXD A;  1F80 A;  2WAS A;  4U67 P;  3I55 R;  2QA4 R;  1VQ6 R;  3CMA R;  5CMO A;  1FTF A;  1KC8 S;  3OW2 Q;  4WFA P;  3J7Y T; 
#chains in the Genus database with same CATH homology
 1Q82 S;  1YIJ R;  1VQ9 R;  3CCJ R;  5JVG P;  1K8A S;  5H1S U;  1KD1 S;  2QEX R;  3CC2 R;  1NJI S;  3G71 R;  4UY8 S;  4IO9 P;  4WFN P;  1VQ4 R;  1VQ5 R;  1YJN R;  1YJ9 R;  1VQK R;  3CCE R;  2ZJR P;  5DM7 P;  1S72 R;  3CCM R;  5DM6 P;  1K73 S;  2ZJQ P;  1I4J A;  4IOC P;  1VQP R;  1YJW R;  1K9M S;  4WFB P;  1KQS Q;  3CPW Q;  1YHQ R;  1M90 S;  3PIO P;  1N8R S;  5JVH P;  3I56 R;  1Q86 S;  1VQN R;  3CCL R;  3CCR R;  5HL7 P;  1VQ8 R;  3CCQ R;  1QVF Q;  3CC4 R;  4V19 W;  2ZJP P;  1BXE A;  4WCE P;  1JJ2 Q;  3CD6 R;  3DLL P;  5GAD T;  1VQL R;  3CXC Q;  3CC7 R;  3J7Y T;  3CME R;  5GAH T;  5GAG T;  1VQ7 R;  3CCV R;  1VQM R;  5GAE T;  4IOA P;  1YIT R;  5MLC U;  1QVG Q;  3J7Z S;  3CF5 P;  3G6E R;  4WF9 P;  1VQO R;  2OTL R;  1Q7Y S;  2OTJ R;  3CCS R;  3CCU R;  1YI2 R;  3PIP P;  3G4S R;  1Q81 S;  1W2B Q;  1M1K S;  4U67 P;  3I55 R;  2QA4 R;  1VQ6 R;  3CMA R;  1KC8 S;  4WFA P;  3OW2 Q; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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