1JJ2T

Fully refined crystal structure of the haloarcula marismortui large ribosomal subunit at 2.4 angstrom resolution
Total Genus 11
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
11
sequence length
53
structure length
53
Chain Sequence
RECDYCGTDIEPGTGTMFVHKDGATTHFCSSKCENNADLGREARNLEWTDTAR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ribosome
molecule keywords 23S RRNA
publication title The kink-turn: a new RNA secondary structure motif.
pubmed doi rcsb
total genus 11
structure length 53
sequence length 53
ec nomenclature
pdb deposition date 2001-07-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
T PF01246 Ribosomal_L24e Ribosomal protein L24e
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.170.20 Mainly Beta Roll Ribosomal Protein L24e; Chain: T; Ribosomal Protein L24e; Chain: T; 1jj2T00
1YI2U 3CC2U 1VQ6U 1Q7YV 1VQ7U 1YIJU 1YJWU 1YJ9U 1VQ9U 1NJIV 2OTLU 1Q86V 3CCQU 3G71U 1M1KV 1VQOU 5AN9G 3G6EU 3CCEU 1K73V 1VQPU 3CCRU 1K9MV 3CC7U 3CD6U 2QEXU 1VQ5U 3CC4U 3CCVU 1M90V 3CMEU 1QVFT 1QVGT 1K8AV 1JJ2T 3OW2T 3I56U 1VQKU 1YJNU 1W2BT 1Q81V 1VQMU 1N8RV 1VQNU 3CCSU 1KD1V 1VQ8U 1VQLU 3CPWT 1S72U 2OTJU 1Q82V 3I55U 1YHQU 3CXCT 3CCJU 3CCUU 2QA4U 1YITU 3CCMU 1KC8V 1KQST 3CCLU 1VQ4U 3CMAU 3G4SU
chains in the Genus database with same CATH superfamily
3CC2U 1VQ7U 1YJWU 3ABQA 3ABSA 2QEXU 1VQ5U 1K8AV 1N8RV 1VQNU 3J7ZX 3CCSU 3CPWT 2OTJU 1KC8V 1JJDA 1KQST 3CCLU 1S72U 1YI2U 1Q7YV 1YJ9U 1VQ9U 3ANYA 1M1KV 4UY8X 3G6EU 1K73V 3CD6U 3CCRU 1M90V 1QVGT 1JJ2T 3OW2T 1YJNU 1KD1V 1VQ8U 3I55U 5DM6U 1VQKU 1YIJU 1NJIV 3G71U 5AN9G 3CC7U 1K9MV 1YHQU 1YITU 2JZ6A 1VQ4U 3CMAU 1VQ6U 2QEZA 3AO0A 2OTLU 3ABOA 1Q86V 3CCQU 1VQOU 3CCEU 1VQPU 3CC4U 3CCVU 3CMEU 1QVFT 3I56U 1W2BT 1Q81V 1VQMU 1VQLU 1Q82V 3CXCT 3CCJU 3CCUU 2QA4U 3CCMU 5H1SY 5MLCY 3ABRA 3G4SU
chains in the Genus database with same CATH topology
1YI2U 3CC2U 1VQ6U 1Q7YV 1VQ7U 1YIJU 1YJWU 1YJ9U 1VQ9U 1NJIV 2OTLU 1Q86V 3CCQU 3G71U 1M1KV 1VQOU 5AN9G 3G6EU 3CCEU 1K73V 1VQPU 3CCRU 1K9MV 3CC7U 3CD6U 2QEXU 1VQ5U 3CC4U 3CCVU 1M90V 3CMEU 1QVFT 1QVGT 1K8AV 1JJ2T 3OW2T 3I56U 1VQKU 1YJNU 1W2BT 1Q81V 1VQMU 1N8RV 1VQNU 3CCSU 1KD1V 1VQ8U 1VQLU 3CPWT 1S72U 2OTJU 1Q82V 3I55U 1YHQU 3CXCT 3CCJU 3CCUU 2QA4U 1YITU 3CCMU 1KC8V 1JJDA 1KQST 3CCLU 1VQ4U 3CMAU 3G4SU
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1YI2 U;  3CC2 U;  1VQ6 U;  1Q7Y V;  1VQ7 U;  1YIJ U;  1YJW U;  1YJ9 U;  1VQ9 U;  1NJI V;  2OTL U;  1Q86 V;  3CCQ U;  3G71 U;  1M1K V;  1VQO U;  5AN9 G;  3G6E U;  3CCE U;  1K73 V;  1VQP U;  3CCR U;  1K9M V;  3CC7 U;  3CD6 U;  2QEX U;  1VQ5 U;  3CC4 U;  3CCV U;  1M90 V;  3CME U;  1QVF T;  1QVG T;  1K8A V;  1JJ2 T;  3OW2 T;  3I56 U;  1VQK U;  1YJN U;  1W2B T;  1Q81 V;  1VQM U;  1N8R V;  1VQN U;  3CCS U;  1KD1 V;  1VQ8 U;  1VQL U;  3CPW T;  1S72 U;  2OTJ U;  1Q82 V;  3I55 U;  1YHQ U;  3CXC T;  3CCJ U;  3CCU U;  2QA4 U;  1YIT U;  3CCM U;  1KC8 V;  1KQS T;  3CCL U;  1VQ4 U;  3CMA U;  3G4S U; 
#chains in the Genus database with same CATH topology
 3CC2 U;  1VQ7 U;  1YJW U;  3ABQ A;  3ABS A;  2QEX U;  1VQ5 U;  1K8A V;  1N8R V;  1VQN U;  3J7Z X;  3CCS U;  3CPW T;  2OTJ U;  1KC8 V;  1JJD A;  1KQS T;  3CCL U;  1S72 U;  1YI2 U;  1Q7Y V;  1YJ9 U;  1VQ9 U;  3ANY A;  1M1K V;  4UY8 X;  3G6E U;  1K73 V;  3CD6 U;  3CCR U;  1M90 V;  1QVG T;  1JJ2 T;  3OW2 T;  1YJN U;  1KD1 V;  1VQ8 U;  3I55 U;  5DM6 U;  1VQK U;  1YIJ U;  1NJI V;  3G71 U;  5AN9 G;  3CC7 U;  1K9M V;  1YHQ U;  1YIT U;  2JZ6 A;  1VQ4 U;  3CMA U;  1VQ6 U;  2QEZ A;  3AO0 A;  2OTL U;  3ABO A;  1Q86 V;  3CCQ U;  1VQO U;  3CCE U;  1VQP U;  3CC4 U;  3CCV U;  3CME U;  1QVF T;  3I56 U;  1W2B T;  1Q81 V;  1VQM U;  1VQL U;  1Q82 V;  3CXC T;  3CCJ U;  3CCU U;  2QA4 U;  3CCM U;  5H1S Y;  5MLC Y;  3ABR A;  3G4S U; 
#chains in the Genus database with same CATH homology
 1YI2 U;  3CC2 U;  1VQ6 U;  1Q7Y V;  1VQ7 U;  1YIJ U;  1YJW U;  1YJ9 U;  1VQ9 U;  1NJI V;  2OTL U;  1Q86 V;  3CCQ U;  3G71 U;  1M1K V;  1VQO U;  5AN9 G;  3G6E U;  3CCE U;  1K73 V;  1VQP U;  3CCR U;  1K9M V;  3CC7 U;  3CD6 U;  2QEX U;  1VQ5 U;  3CC4 U;  3CCV U;  1M90 V;  3CME U;  1QVF T;  1QVG T;  1K8A V;  1JJ2 T;  3OW2 T;  3I56 U;  1VQK U;  1YJN U;  1W2B T;  1Q81 V;  1VQM U;  1N8R V;  1VQN U;  3CCS U;  1KD1 V;  1VQ8 U;  1VQL U;  3CPW T;  1S72 U;  2OTJ U;  1Q82 V;  3I55 U;  1YHQ U;  3CXC T;  3CCJ U;  3CCU U;  2QA4 U;  1YIT U;  3CCM U;  1KC8 V;  1JJD A;  1KQS T;  3CCL U;  1VQ4 U;  3CMA U;  3G4S U; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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