1JKEA

D-tyr trnatyr deacylase from escherichia coli
Total Genus 37
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
37
sequence length
145
structure length
145
Chain Sequence
MIALIQRVTRASVTVEGEVTGEIGAGLLVLLGVEKDDDEQKANRLCERVLGYRIFSDAEGKMNLNVQQAGGSVLVVSQFTLAADTERGMRPSFSKGASPDRAEALYDYFVERCRQQEMNTQTGRFAADMQVSLVNDGPVTFWLQV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structure of crystalline D-Tyr-tRNA(Tyr) deacylase. A representative of a new class of tRNA-dependent hydrolases.
pubmed doi rcsb
molecule tags Hydrolase
source organism Escherichia coli
molecule keywords D-Tyr-tRNATyr deacylase
total genus 37
structure length 145
sequence length 145
chains with identical sequence B, C, D
ec nomenclature ec 3.1.1.96: D-aminoacyl-tRNA deacylase.
pdb deposition date 2001-07-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02580 Tyr_Deacylase D-Tyr-tRNA(Tyr) deacylase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.50.80.10 Alpha Beta 3-Layer(bba) Sandwich D-tyrosyl-trna(Tyr) Deacylase; Chain: A; D-tyrosyl-trna(Tyr) Deacylase; Chain: A; 1jkeA00
2HL2A 3PD3A 3KOBA 4RRMA 4RR6A 4S0KA 2HKZA 4NBJA 4RRHA 3KNPA 2HL1A 3LMTA 4RR7A 4S0LA 5J61A 3PD5A 2DBOA 4RRKA 4RRGA 3KOCA 1TC5A 4RR9A 4RRAA 3LMVA 2HL0A 4NBIA 4S03A 4RRRA 4RRQA 4RRFA 4S0IA 3PD2A 4RRCA 3PD4A 4S0JA 3LMUA 1JKEA 4S02A 4RRLA 4RRDA 4RR8A 3KO3A 4RRBA 3KO9A 2OKVA 3KODA 4RRJA 3KNFA 4RRIA 3KO7A 3KO4A 1J7GA 1Y2QA 3KO5A
chains in the Genus database with same CATH superfamily
2XLNA 2EXBA 3V39A 2HL2A 1W8YA 2EX6A 2Y59A 5CEDA 2DBOA 4S03A 4RRFA 2VGJA 2EX2A 4S0IA 3LMUA 1W5DA 3KO9A 3KO7A 3KO4A 1W8QA 2Y4AA 4BENA 3KOBA 4RRMA 2HKZA 4NBJA 4RR7A 5J61A 2HL1A 4RRKA 4RR9A 5CERA 3ZVWA 3ZVTA 4RRQA 2XK1A 3PD2A 4RRCA 3PD4A 4S0JA 4S02A 4RRDA 4RR8A 4RRJA 1J7GA 3KO5A 3PD3A 4S0KA 5CEBA 3ZCZA 4B4XA 2XDMA 3LMTA 4RRGA 3KOCA 5CECA 3LMVA 4NBIA 2Y55A 3A3FA 1JKEA 4B4ZA 2J9PA 3KO3A 4RRBA 2OKVA 3KODA 3A3DA 1Y2QA 2EXAA 2EX9A 4RR6A 2WKEA 4RRHA 3KNPA 3A3IA 4S0LA 3PD5A 2VGKA 1TC5A 4RRAA 1W79A 2HL0A 2EX8A 4RRRA 4RRLA 3A3EA 3KNFA 4RRIA
chains in the Genus database with same CATH topology
2XLNA 2EXBA 3V39A 2HL2A 1W8YA 2EX6A 2Y59A 5CEDA 2DBOA 4S03A 4RRFA 2VGJA 2EX2A 4S0IA 3LMUA 1W5DA 3KO9A 3KO7A 3KO4A 1W8QA 2Y4AA 4BENA 3KOBA 4RRMA 2HKZA 4NBJA 4RR7A 5J61A 2HL1A 4RRKA 4RR9A 5CERA 3ZVWA 3ZVTA 4RRQA 2XK1A 3PD2A 4RRCA 3PD4A 4S0JA 4S02A 4RRDA 4RR8A 4RRJA 1J7GA 3KO5A 3PD3A 4S0KA 5CEBA 3ZCZA 4B4XA 2XDMA 3LMTA 4RRGA 3KOCA 5CECA 3LMVA 4NBIA 2Y55A 3A3FA 1JKEA 4B4ZA 2J9PA 3KO3A 4RRBA 2OKVA 3KODA 3A3DA 1Y2QA 2EXAA 2EX9A 4RR6A 2WKEA 4RRHA 3KNPA 3A3IA 4S0LA 3PD5A 2VGKA 1TC5A 4RRAA 1W79A 2HL0A 2EX8A 4RRRA 4RRLA 3A3EA 3KNFA 4RRIA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2HL2 A;  3PD3 A;  3KOB A;  4RRM A;  4RR6 A;  4S0K A;  2HKZ A;  4NBJ A;  4RRH A;  3KNP A;  2HL1 A;  3LMT A;  4RR7 A;  4S0L A;  5J61 A;  3PD5 A;  2DBO A;  4RRK A;  4RRG A;  3KOC A;  1TC5 A;  4RR9 A;  4RRA A;  3LMV A;  2HL0 A;  4NBI A;  4S03 A;  4RRR A;  4RRQ A;  4RRF A;  4S0I A;  3PD2 A;  4RRC A;  3PD4 A;  4S0J A;  3LMU A;  1JKE A;  4S02 A;  4RRL A;  4RRD A;  4RR8 A;  3KO3 A;  4RRB A;  3KO9 A;  2OKV A;  3KOD A;  4RRJ A;  3KNF A;  4RRI A;  3KO7 A;  3KO4 A;  1J7G A;  1Y2Q A;  3KO5 A; 
#chains in the Genus database with same CATH topology
 2XLN A;  2EXB A;  3V39 A;  2HL2 A;  1W8Y A;  2EX6 A;  2Y59 A;  5CED A;  2DBO A;  4S03 A;  4RRF A;  2VGJ A;  2EX2 A;  4S0I A;  3LMU A;  1W5D A;  3KO9 A;  3KO7 A;  3KO4 A;  1W8Q A;  2Y4A A;  4BEN A;  3KOB A;  4RRM A;  2HKZ A;  4NBJ A;  4RR7 A;  5J61 A;  2HL1 A;  4RRK A;  4RR9 A;  5CER A;  3ZVW A;  3ZVT A;  4RRQ A;  2XK1 A;  3PD2 A;  4RRC A;  3PD4 A;  4S0J A;  4S02 A;  4RRD A;  4RR8 A;  4RRJ A;  1J7G A;  3KO5 A;  3PD3 A;  4S0K A;  5CEB A;  3ZCZ A;  4B4X A;  2XDM A;  3LMT A;  4RRG A;  3KOC A;  5CEC A;  3LMV A;  4NBI A;  2Y55 A;  3A3F A;  1JKE A;  4B4Z A;  2J9P A;  3KO3 A;  4RRB A;  2OKV A;  3KOD A;  3A3D A;  1Y2Q A;  2EXA A;  2EX9 A;  4RR6 A;  2WKE A;  4RRH A;  3KNP A;  3A3I A;  4S0L A;  3PD5 A;  2VGK A;  1TC5 A;  4RRA A;  1W79 A;  2HL0 A;  2EX8 A;  4RRR A;  4RRL A;  3A3E A;  3KNF A;  4RRI A; 
#chains in the Genus database with same CATH homology
 2XLN A;  2EXB A;  3V39 A;  2HL2 A;  1W8Y A;  2EX6 A;  2Y59 A;  5CED A;  2DBO A;  4S03 A;  4RRF A;  2VGJ A;  2EX2 A;  4S0I A;  3LMU A;  1W5D A;  3KO9 A;  3KO7 A;  3KO4 A;  1W8Q A;  2Y4A A;  4BEN A;  3KOB A;  4RRM A;  2HKZ A;  4NBJ A;  4RR7 A;  5J61 A;  2HL1 A;  4RRK A;  4RR9 A;  5CER A;  3ZVW A;  3ZVT A;  4RRQ A;  2XK1 A;  3PD2 A;  4RRC A;  3PD4 A;  4S0J A;  4S02 A;  4RRD A;  4RR8 A;  4RRJ A;  1J7G A;  3KO5 A;  3PD3 A;  4S0K A;  5CEB A;  3ZCZ A;  4B4X A;  2XDM A;  3LMT A;  4RRG A;  3KOC A;  5CEC A;  3LMV A;  4NBI A;  2Y55 A;  3A3F A;  1JKE A;  4B4Z A;  2J9P A;  3KO3 A;  4RRB A;  2OKV A;  3KOD A;  3A3D A;  1Y2Q A;  2EXA A;  2EX9 A;  4RR6 A;  2WKE A;  4RRH A;  3KNP A;  3A3I A;  4S0L A;  3PD5 A;  2VGK A;  1TC5 A;  4RRA A;  1W79 A;  2HL0 A;  2EX8 A;  4RRR A;  4RRL A;  3A3E A;  3KNF A;  4RRI A; 
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