1JL0A

Structure of a human s-adenosylmethionine decarboxylase self-processing ester intermediate and mechanism of putrescine stimulation of processing as revealed by the h243a mutant
Total Genus 91
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
91
sequence length
325
structure length
310
Chain Sequence
HFFEGTEKLLEVWFSRQQGSGDLRTIPRSEWDILLKDVQCSIISVTKTDKQEAYVLSESSMFVSKRRFILKTCGTTLLLKALVPLLKLARDYSGFDSIQSFFYSRKNFMKPSHQGYPHRNFQEEIEFLNAIFPNGAGYCMGRMNSDCWYLYTLDFPVISQPDQTLEILMSELDPAVMDQFYMKDGVTAKDVTRESGIRDLIPGSVIDATMFNPCGYSMNGMKSDGTYWTIAITPEPEFSYVSFETNLSQTSYDDLIRKVVEVFKPGKFVTTLFVNQSSKCQKIEGFKRLDCQSAMFNDYNFVFTSFAKKQ
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structure of a human S-adenosylmethionine decarboxylase self-processing ester intermediate and mechanism of putrescine stimulation of processing as revealed by the H243A mutant.
pubmed doi rcsb
molecule tags Lyase
source organism Homo sapiens
molecule keywords S-ADENOSYLMETHIONINE DECARBOXYLASE PROENZYME
total genus 91
structure length 310
sequence length 325
chains with identical sequence B
ec nomenclature ec 4.1.1.50: Adenosylmethionine decarboxylase.
pdb deposition date 2001-07-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01536 SAM_decarbox Adenosylmethionine decarboxylase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.60.90.10 Alpha Beta 4-Layer Sandwich S-adenosylmethionine decarboxylase S-adenosylmethionine decarboxylase 1jl0A00
3EPBA 5TVOA 2IIIA 1TMIA 3H0VA 1I79A 1I7MA 3DZ7A 3DZ5A 1MSVA 1JL0A 1I72A 3DZ4A 1JENA 3H0WA 3EP7A 3EP8A 1VR7A 3EP3A 1I7CA 3EP9A 1TLUA 3EPAA 3EP6A 1MHMA 3DZ3A 3DZ2A 3EP4A 1I7BA 3DZ6A 3EP5A
chains in the Genus database with same CATH superfamily
3EPBA 5TVOA 2IIIA 1TMIA 3H0VA 1I79A 1I7MA 3DZ7A 3DZ5A 1MSVA 1JL0A 1I72A 3DZ4A 1JENA 3H0WA 3EP7A 3EP8A 1VR7A 3EP3A 1I7CA 3EP9A 1TLUA 3EPAA 3EP6A 1MHMA 3DZ3A 3DZ2A 3EP4A 1I7BA 3DZ6A 3EP5A
chains in the Genus database with same CATH topology
3EPBA 3EP5B 5TVOA 2IIIA 3H0VB 1TMIA 3H0VA 5TVOB 1I79B 1I79A 1I7MB 3DZ7B 1I7MA 3DZ7A 3DZ5A 3DZ5B 1MSVA 1JL0A 1I72B 3DZ4B 1I72A 1JENB 1JENA 3DZ4A 3H0WA 3H0WB 3EP7B 3EP8B 3EP7A 3EP8A 1VR7A 3EP3B 3EP3A 1I7CB 1I7CA 3EP9A 1TLUA 3EP9B 3EPAB 3EPAA 3EP6B 3EP6A 1MHMB 1MHMA 3DZ3B 3DZ3A 3DZ2B 3DZ2A 3EP4B 3EP4A 1I7BB 1I7BA 3DZ6B 3DZ6A 3EP5A 3EPBB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3EPB A;  5TVO A;  2III A;  1TMI A;  3H0V A;  1I79 A;  1I7M A;  3DZ7 A;  3DZ5 A;  1MSV A;  1JL0 A;  1I72 A;  3DZ4 A;  1JEN A;  3H0W A;  3EP7 A;  3EP8 A;  1VR7 A;  3EP3 A;  1I7C A;  3EP9 A;  1TLU A;  3EPA A;  3EP6 A;  1MHM A;  3DZ3 A;  3DZ2 A;  3EP4 A;  1I7B A;  3DZ6 A;  3EP5 A; 
#chains in the Genus database with same CATH topology
 3EPB A;  5TVO A;  2III A;  1TMI A;  3H0V A;  1I79 A;  1I7M A;  3DZ7 A;  3DZ5 A;  1MSV A;  1JL0 A;  1I72 A;  3DZ4 A;  1JEN A;  3H0W A;  3EP7 A;  3EP8 A;  1VR7 A;  3EP3 A;  1I7C A;  3EP9 A;  1TLU A;  3EPA A;  3EP6 A;  1MHM A;  3DZ3 A;  3DZ2 A;  3EP4 A;  1I7B A;  3DZ6 A;  3EP5 A; 
#chains in the Genus database with same CATH homology
 3EPB A;  3EP5 B;  5TVO A;  2III A;  3H0V B;  1TMI A;  3H0V A;  5TVO B;  1I79 B;  1I79 A;  1I7M B;  3DZ7 B;  1I7M A;  3DZ7 A;  3DZ5 A;  3DZ5 B;  1MSV A;  1JL0 A;  1I72 B;  3DZ4 B;  1I72 A;  1JEN B;  1JEN A;  3DZ4 A;  3H0W A;  3H0W B;  3EP7 B;  3EP8 B;  3EP7 A;  3EP8 A;  1VR7 A;  3EP3 B;  3EP3 A;  1I7C B;  1I7C A;  3EP9 A;  1TLU A;  3EP9 B;  3EPA B;  3EPA A;  3EP6 B;  3EP6 A;  1MHM B;  1MHM A;  3DZ3 B;  3DZ3 A;  3DZ2 B;  3DZ2 A;  3EP4 B;  3EP4 A;  1I7B B;  1I7B A;  3DZ6 B;  3DZ6 A;  3EP5 A;  3EPB B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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