1JO0A

Structure of hi1333, a hypothetical protein from haemophilus influenzae with structural similarity to rna-binding proteins
Total Genus 28
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
28
sequence length
97
structure length
97
Chain Sequence
TTLSTKQKQFLKGLAHHLNPVVMLGGNGLTEGVLAEIENALNHHELIKVKVAGADRETKQLIINAIVRETKAAQVQTIGHILVLYRPSEEAKIQLPR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Structural genomics, unknown function
molecule keywords HYPOTHETICAL PROTEIN HI1333
publication title Structure of HI1333 (YhbY), a putative RNA-binding protein from Haemophilus influenzae
pubmed doi rcsb
source organism Haemophilus influenzae
total genus 28
structure length 97
sequence length 97
chains with identical sequence B
ec nomenclature
pdb deposition date 2001-07-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01985 CRS1_YhbY CRS1 / YhbY (CRM) domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.110.60 Alpha Beta 2-Layer Sandwich Translation Initiation Factor IF3 YhbY-like 1jo0A00
1LN4A 1RQ8A 1JO0A
chains in the Genus database with same CATH superfamily
4YKEA 1XEZA 1NJ1A 3TTDA 3ZIIA 1PAVA 1NJ8A 3ZIEA 3TTFA 3U6YA 1H4SA 1UDVA 2LXRA 2GTCA 3IALA 1JE3A 1H4QA 1NFJA 1II7A 2CRQA 4OLFA 2BKYX 1JO0A 2Y1BA 3HZ7A 4HD0A 1S8EA 3TSQA 4FCXA 1H0XA 4FBKA 1H4TA 4WI1A 2A2YA 1LN4A 4HVZA 1NJ2A 3TOEA 1RQ8A 2P9BA 4YDQA 1JDQA 3LVJC 2M71A 4NZTM 3IABA 2EH1A 1Y2IA 4K86A 4Q15A 1DCJA 4NZRM 1NH9A 4Z9EA 2IFEA 3P04A 2Q3VA 4TWAA 3WBMA 3DSCA 1H0YA 1Y9XA 3TTCA 4HVCA 3IABB 3ZIHA 1VR4A 2L8YA 2LN3A 3T1IA 2EK0A 4K88A 4NCXA 1NJ5A 2Z7CA 3TSUA 3VTHA 2H9UA 1NJ6A 1HC7A 3DSDA 1TIGA 3QKBA 4FBWA 4K87A 3TSPA 1NFHA 3VTIA 3ZIGA 4FBQA 4EO0A 1VM0A 3LVKB
chains in the Genus database with same CATH topology
1LN4A 1RQ8A 1JO0A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1LN4 A;  1RQ8 A;  1JO0 A; 
#chains in the Genus database with same CATH topology
 4YKE A;  1XEZ A;  1NJ1 A;  3TTD A;  3ZII A;  1PAV A;  1NJ8 A;  3ZIE A;  3TTF A;  3U6Y A;  1H4S A;  1UDV A;  2LXR A;  2GTC A;  3IAL A;  1JE3 A;  1H4Q A;  1NFJ A;  1II7 A;  2CRQ A;  4OLF A;  2BKY X;  1JO0 A;  2Y1B A;  3HZ7 A;  4HD0 A;  1S8E A;  3TSQ A;  4FCX A;  1H0X A;  4FBK A;  1H4T A;  4WI1 A;  2A2Y A;  1LN4 A;  4HVZ A;  1NJ2 A;  3TOE A;  1RQ8 A;  2P9B A;  4YDQ A;  1JDQ A;  3LVJ C;  2M71 A;  4NZT M;  3IAB A;  2EH1 A;  1Y2I A;  4K86 A;  4Q15 A;  1DCJ A;  4NZR M;  1NH9 A;  4Z9E A;  2IFE A;  3P04 A;  2Q3V A;  4TWA A;  3WBM A;  3DSC A;  1H0Y A;  1Y9X A;  3TTC A;  4HVC A;  3IAB B;  3ZIH A;  1VR4 A;  2L8Y A;  2LN3 A;  3T1I A;  2EK0 A;  4K88 A;  4NCX A;  1NJ5 A;  2Z7C A;  3TSU A;  3VTH A;  2H9U A;  1NJ6 A;  1HC7 A;  3DSD A;  1TIG A;  3QKB A;  4FBW A;  4K87 A;  3TSP A;  1NFH A;  3VTI A;  3ZIG A;  4FBQ A;  4EO0 A;  1VM0 A;  3LVK B; 
#chains in the Genus database with same CATH homology
 1LN4 A;  1RQ8 A;  1JO0 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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