1JQOA

Crystal structure of c4-form phosphoenolpyruvate carboxylase from maize
Total Genus 348
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
348
sequence length
936
structure length
904
Chain Sequence
IEYDALLVDRFLNILQDLHGPSLREFVQECYEVSADYEGKGDTTKLGELGAKLTGLAPADAILVASSILHMLNLANLAEEVQIAHRRRNSDIEETLKRLVSEVGKSPEEVFEALKNQTVDLVFTAHPTQSARRSLLQKNARIRNCLTQLNAKDITDDDKQELDEALQREIQAAFRTDEIRRAQPTPQAEMRYGMSYIHETVWKGVPKFLRRVDTALKNIGINERLPYNVSLIRFSSWMGGDRDGNPRVTPEVTRDVCLLARMMAANLYIDQIEELMFELSMWRCNDELRVRAEELHSSSGSKVTKYYIEFWKQIPPNEPYRVILGHVRDKLYNTRERARHLLASGVSEISAESSFTSIEEFLEPLELCYKSLCDCGDKAIADGSLLDLLRQVFTFGLSLVKLDIRQESERHTDVIDAITTHLGIGSYREWPEDKRQEWLLSELRGKRPLLPPDLPQTDEIADVIGAFHVLAELPPDSFGPYIISMATAPSDVLAVELLQRECGVRQPLPVVPLFERLADLQSAPASVERLFSVDWYMDRIKGKQQVMVGYSDSGKDAGRLSAAWQLYRAQEEMAQVAKRYGVKLTLFHGRGGTVGRGGGPTHLAILSQPPDTINGSIRVTVQGEVIEFCFGEEHLCFQTLQRFTAATLEHGMHPPVSPKPEWRKLMDEMAVVATEEYRSVVVKEARFVEYFRSATPETEYGRMNIGSRPITTLRAIPWIFSWTQTRFHLPVWLGVGAAFKFAIDKDVRNFQVLKEMYNEWPFFRVTLDLLEMVFAKGDPGIAGLYDELLVAEELKPFGKQLRDKYVETQQLLLQIAGHKDILEGDPFLKQGLVLRNPYITTLNVFQAYTLKRIRDPNFKVTPQPPLSKEAGLVKLNPASEYPPGLEDTLILTMKGIAAGMQNTG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Crystal structures of C4 form maize and quaternary complex of E. coli phosphoenolpyruvate carboxylases.
pubmed doi rcsb
molecule tags Lyase
molecule keywords phosphoenolpyruvate carboxylase
total genus 348
structure length 904
sequence length 936
chains with identical sequence B
ec nomenclature ec 4.1.1.31: Phosphoenolpyruvate carboxylase.
pdb deposition date 2001-08-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00311 PEPcase Phosphoenolpyruvate carboxylase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1440.90 Mainly Alpha Up-down Bundle de novo design (two linked rop proteins) Phosphoenolpyruvate/pyruvate domain 1jqoA03
1JQOA
chains in the Genus database with same CATH superfamily
2K19A 2JB1A 3LJ1A 5HGIA 2P22B 4HFVA 3L0IA 4PL3A 2V6EA 3AJFA 4AS3A 3JSBA 3IAM1 2RADA 3UITA 1U5KA 1TDPA 3DA4A 4Z7HA 4O1OA 4OAVB 2ETDA 2XTRA 4YZ9A 2YFBA 4AS2A 2FUG1 4NV5A 2L1LB 3FBVA 4NV2A 4G76A 2FU2A 2MJFB 3I9V1 3DO9A 2GSCA 4HEA1 1W3SA 4I1TA 3F4MA 2ZRRA 3SDJA 2BL8A 2QSBA 3KP9A 3FNBA 2F66B 4PL5A 3Q8DA 2F6MB 3LJ2A 3B55A 3VA9A 2RIOA 2XTQA 2V1CC 2QZGA 1SJ8A 2RLDA 3IAS1 4YZCA 2JB3A 5LNK1 2E8GA 2JBWA 2KKMA 1JQOA 2BL7A 4Z7GA 2XMXA 2HGKA 3FVVA 4OAUC 2A2DA 4PL4A 2A2CA 4DWLA 2CAZB 4YZDA 4O1PA 3DA3A 3LJ0A 4U6RA 4GXTA 4G75A 2YFAA 1YO7A 4Q9VA 2FEFA 2JB2A 3P23A 2QGMA 2ZW3A 4JCVE 2IP6A 2JAEA
chains in the Genus database with same CATH topology
1JQOA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1JQO A; 
#chains in the Genus database with same CATH topology
 2K19 A;  2JB1 A;  3LJ1 A;  5HGI A;  2P22 B;  4HFV A;  3L0I A;  4PL3 A;  2V6E A;  3AJF A;  4AS3 A;  3JSB A;  3IAM 1;  2RAD A;  3UIT A;  1U5K A;  1TDP A;  3DA4 A;  4Z7H A;  4O1O A;  4OAV B;  2ETD A;  2XTR A;  4YZ9 A;  2YFB A;  4AS2 A;  2FUG 1;  4NV5 A;  2L1L B;  3FBV A;  4NV2 A;  4G76 A;  2FU2 A;  2MJF B;  3I9V 1;  3DO9 A;  2GSC A;  4HEA 1;  1W3S A;  4I1T A;  3F4M A;  2ZRR A;  3SDJ A;  2BL8 A;  2QSB A;  3KP9 A;  3FNB A;  2F66 B;  4PL5 A;  3Q8D A;  2F6M B;  3LJ2 A;  3B55 A;  3VA9 A;  2RIO A;  2XTQ A;  2V1C C;  2QZG A;  1SJ8 A;  2RLD A;  3IAS 1;  4YZC A;  2JB3 A;  5LNK 1;  2E8G A;  2JBW A;  2KKM A;  1JQO A;  2BL7 A;  4Z7G A;  2XMX A;  2HGK A;  3FVV A;  4OAU C;  2A2D A;  4PL4 A;  2A2C A;  4DWL A;  2CAZ B;  4YZD A;  4O1P A;  3DA3 A;  3LJ0 A;  4U6R A;  4GXT A;  4G75 A;  2YFA A;  1YO7 A;  4Q9V A;  2FEF A;  2JB2 A;  3P23 A;  2QGM A;  2ZW3 A;  4JCV E;  2IP6 A;  2JAE A; 
#chains in the Genus database with same CATH homology
 1JQO A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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