1JQOA

Crystal structure of c4-form phosphoenolpyruvate carboxylase from maize
Total Genus 348
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
348
sequence length
936
structure length
904
Chain Sequence
b'IEYDALLVDRFLNILQDLHGPSLREFVQECYEVSADYEGKGDTTKLGELGAKLTGLAPADAILVASSILHMLNLANLAEEVQIAHRRRNSDIEETLKRLVSEVGKSPEEVFEALKNQTVDLVFTAHPTQSARRSLLQKNARIRNCLTQLNAKDITDDDKQELDEALQREIQAAFRTDEIRRAQPTPQAEMRYGMSYIHETVWKGVPKFLRRVDTALKNIGINERLPYNVSLIRFSSWMGGDRDGNPRVTPEVTRDVCLLARMMAANLYIDQIEELMFELSMWRCNDELRVRAEELHSSSGSKVTKYYIEFWKQIPPNEPYRVILGHVRDKLYNTRERARHLLASGVSEISAESSFTSIEEFLEPLELCYKSLCDCGDKAIADGSLLDLLRQVFTFGLSLVKLDIRQESERHTDVIDAITTHLGIGSYREWPEDKRQEWLLSELRGKRPLLPPDLPQTDEIADVIGAFHVLAELPPDSFGPYIISMATAPSDVLAVELLQRECGVRQPLPVVPLFERLADLQSAPASVERLFSVDWYMDRIKGKQQVMVGYSDSGKDAGRLSAAWQLYRAQEEMAQVAKRYGVKLTLFHGRGGTVGRGGGPTHLAILSQPPDTINGSIRVTVQGEVIEFCFGEEHLCFQTLQRFTAATLEHGMHPPVSPKPEWRKLMDEMAVVATEEYRSVVVKEARFVEYFRSATPETEYGRMNIGSRPITTLRAIPWIFSWTQTRFHLPVWLGVGAAFKFAIDKDVRNFQVLKEMYNEWPFFRVTLDLLEMVFAKGDPGIAGLYDELLVAEELKPFGKQLRDKYVETQQLLLQIAGHKDILEGDPFLKQGLVLRNPYITTLNVFQAYTLKRIRDPNFKVTPQPPLSKEAGLVKLNPASEYPPGLEDTLILTMKGIAAGMQNTG'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords phosphoenolpyruvate carboxylase
publication title Crystal structures of C4 form maize and quaternary complex of E. coli phosphoenolpyruvate carboxylases.
pubmed doi rcsb
molecule tags Lyase
total genus 348
structure length 904
sequence length 936
chains with identical sequence B
ec nomenclature ec 4.1.1.31: Phosphoenolpyruvate carboxylase.
pdb deposition date 2001-08-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00311 PEPcase Phosphoenolpyruvate carboxylase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1440.90 Mainly Alpha Up-down Bundle de novo design (two linked rop proteins) Phosphoenolpyruvate/pyruvate domain 1jqoA03
1JQOA
chains in the Genus database with same CATH superfamily
2MJFB 3P23A 3SDJA 2E8GA 3JSBA 3IAS1 5LNK1 2ZW3A 3F4MA 4AS3A 1YO7A 2ETDA 2K19A 3IAM1 4PL3A 2L1LB 2F6MB 2QZGA 2KKMA 3LJ0A 1JQOA 2HGKA 2YFAA 2IP6A 3DA4A 3UITA 2BL7A 3VA9A 3B55A 4O1OA 4YZCA 3FNBA 5HGIA 2JB2A 2GSCA 2A2CA 3L0IA 2QGMA 2RIOA 2JB3A 3LJ1A 1U5KA 2RADA 2QSBA 4AS2A 1TDPA 4YZDA 4OAUC 2XMXA 4PL5A 3AJFA 3KP9A 2FU2A 3FBVA 4NV2A 4GXTA 4HFVA 3FVVA 2FEFA 1W3SA 3Q8DA 2V6EA 3DA3A 2JBWA 4G76A 2A2DA 4NV5A 2JAEA 2ZRRA 4Z7HA 2P22B 1SJ8A 4Z7GA 3I9V1 2FUG1 3LJ2A 3DO9A 4PL4A 2V1CC 2XTRA 2RLDA 4JCVE 4HEA1 4O1PA 2CAZB 4G75A 4OAVB 2F66B 2JB1A 2BL8A 4I1TA 2XTQA 4YZ9A 4U6RA 4Q9VA 2YFBA 4DWLA
chains in the Genus database with same CATH topology
1JQOA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1JQO A; 
#chains in the Genus database with same CATH topology
 2MJF B;  3P23 A;  3SDJ A;  2E8G A;  3JSB A;  3IAS 1;  5LNK 1;  2ZW3 A;  3F4M A;  4AS3 A;  1YO7 A;  2ETD A;  2K19 A;  3IAM 1;  4PL3 A;  2L1L B;  2F6M B;  2QZG A;  2KKM A;  3LJ0 A;  1JQO A;  2HGK A;  2YFA A;  2IP6 A;  3DA4 A;  3UIT A;  2BL7 A;  3VA9 A;  3B55 A;  4O1O A;  4YZC A;  3FNB A;  5HGI A;  2JB2 A;  2GSC A;  2A2C A;  3L0I A;  2QGM A;  2RIO A;  2JB3 A;  3LJ1 A;  1U5K A;  2RAD A;  2QSB A;  4AS2 A;  1TDP A;  4YZD A;  4OAU C;  2XMX A;  4PL5 A;  3AJF A;  3KP9 A;  2FU2 A;  3FBV A;  4NV2 A;  4GXT A;  4HFV A;  3FVV A;  2FEF A;  1W3S A;  3Q8D A;  2V6E A;  3DA3 A;  2JBW A;  4G76 A;  2A2D A;  4NV5 A;  2JAE A;  2ZRR A;  4Z7H A;  2P22 B;  1SJ8 A;  4Z7G A;  3I9V 1;  2FUG 1;  3LJ2 A;  3DO9 A;  4PL4 A;  2V1C C;  2XTR A;  2RLD A;  4JCV E;  4HEA 1;  4O1P A;  2CAZ B;  4G75 A;  4OAV B;  2F66 B;  2JB1 A;  2BL8 A;  4I1T A;  2XTQ A;  4YZ9 A;  4U6R A;  4Q9V A;  2YFB A;  4DWL A; 
#chains in the Genus database with same CATH homology
 1JQO A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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