1JR7A

Crystal structure of gab reveals oxidoreductase fold
Total Genus 93
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
93
sequence length
311
structure length
306
Chain Sequence
GQDYSGFTLTPSAQSPRLLELTFTEQTTKQFLEQVAEWPVQALEYKSFLRFRVAKILDDLCANQLQPLLLKTLLNRAEGALLINAVGVDDVKQADEMVKLATAVAHLIGRSNFDAMSGQYYARFVVKNVYLRQPHRVMELHNDGTYVEEITDYVLMMKIDEQNMQGGNSLLLHLDDWEHLDNYFRHPLARRPMRFAAPPSKNVSKDVFHPVFDVDQQGRPVMRYIDQFVQPKDFEEGVWLSELSDAIETSKGILSVPVPVGKFLLINNLFWLHGRDRFTPHPDLRRELMRQRGYFAYASNHYQTHQ
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase, lyase
molecule keywords HYPOTHETICAL 37.4 KDA PROTEIN IN ILEY-GABD INTERGENIC REGION
publication title Structural genomics: a pipeline for providing structures for the biologist.
pubmed doi rcsb
source organism Escherichia coli
total genus 93
structure length 306
sequence length 311
ec nomenclature
pdb deposition date 2001-08-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF08943 CsiD CsiD
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.60.130.10 Alpha Beta 4-Layer Sandwich Double-stranded beta-helix Clavaminate synthase-like 1jr7A00
3R1JA 2WBPA 1DRTA 1Y0ZA 1OTJA 4C5WA 4CWDA 4M26A 4M27A 4M2EA 4Y0EA 2OG7A 2WBQA 1GQWA 1NX8A 4M2CA 1DS0A 4BG1A 1VZ5A 4M2FA 3N6WA 1OIJA 3PVJA 5KEUA 3V15A 1GY9A 4M2GA 3SWTA 1DS1A 2R6SA 4BHFA 1OIIA 4NE0A 2Q4AA 4BHIA 1OIJB 4BGMA 1VZ4A 1OIHA 4M23A 4M2IA 4CVYA 4C8RA 3O2GA 2OG6A 1OIKA 4BGKA 4J5IA 1OS7A 1DRYA 1OIJC 4OJ8A 3MS5A 5HSXA 1NX4A 1JR7A 2OG5A 2WBOA 5J92A 4M25A 3EATX 1GVGA 4BHGA 4FFAA 4YLMX 3V17A
chains in the Genus database with same CATH superfamily
3R1JA 2WBPA 1DRTA 1Y0ZA 1OTJA 4C5WA 4CWDA 4M26A 4M27A 4M2EA 4Y0EA 2OG7A 2WBQA 1GQWA 1NX8A 4M2CA 1DS0A 4BG1A 1VZ5A 4M2FA 3N6WA 1OIJA 3PVJA 5KEUA 3V15A 1GY9A 4M2GA 3SWTA 1DS1A 2R6SA 4BHFA 1OIIA 4NE0A 2Q4AA 4BHIA 1OIJB 4BGMA 1VZ4A 1OIHA 4M23A 4M2IA 4CVYA 4C8RA 3O2GA 1YOXA 1OIKA 2OG6A 4BGKA 4J5IA 1OS7A 1PG6A 1DRYA 1OIJC 4OJ8A 3MS5A 5HSXA 1NX4A 1JR7A 2OG5A 2WBOA 5J92A 4M25A 3EATX 1GVGA 4BHGA 4FFAA 4YLMX 3V17A
chains in the Genus database with same CATH topology
3P3PA 4JAAA 1Y0ZA 4CWDA 1H2KA 4M27A 2WBQA 1GQWA 4BG1A 4M2FA 2YDEA 4Z1VA 1OIJA 1H2MA 3V15A 4AI8A 4M2GA 1DS1A 5JWPA 4Z2WA 1OIIA 3O2GA 2OG6A 1OIKA 2XUMA 1YCIA 1OIJC 4OJ8A 1JR7A 2WBOA 1MZFA 1MZEA 3V17A 4M26A 4M2EA 4M2CA 1VZ5A 3KCYA 5KEUA 1GY9A 3SWTA 2R6SA 4BHFA 4NE0A 4BHIA 1VZ4A 1OIHA 4M23A 2CGNA 4M2IA 4B7EA 4J5IA 1OS7A 1DRYA 5HSXA 4BIOA 5J92A 4M25A 4BHGA 4YLMX 1DRTA 1OTJA 4Y0EA 2OG7A 2YC0A 1NX8A 3N6WA 3PVJA 3D8CA 1OIJB 2ILMA 4CVYA 3KCXA 4BGKA 4NR1A 1IZ3A 3MS5A 3EATX 2WA3A 3R1JA 2WBPA 4C5WA 2CGOA 2Y0IA 1DS0A 1H2LA 2WA4A 2W0XA 3OD4A 2Q4AA 4BGMA 4C8RA 1H2NA 1NX4A 2OG5A 4B7KA 1GVGA 4FFAA 3P3NA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3R1J A;  2WBP A;  1DRT A;  1Y0Z A;  1OTJ A;  4C5W A;  4CWD A;  4M26 A;  4M27 A;  4M2E A;  4Y0E A;  2OG7 A;  2WBQ A;  1GQW A;  1NX8 A;  4M2C A;  1DS0 A;  4BG1 A;  1VZ5 A;  4M2F A;  3N6W A;  1OIJ A;  3PVJ A;  5KEU A;  3V15 A;  1GY9 A;  4M2G A;  3SWT A;  1DS1 A;  2R6S A;  4BHF A;  1OII A;  4NE0 A;  2Q4A A;  4BHI A;  1OIJ B;  4BGM A;  1VZ4 A;  1OIH A;  4M23 A;  4M2I A;  4CVY A;  4C8R A;  3O2G A;  2OG6 A;  1OIK A;  4BGK A;  4J5I A;  1OS7 A;  1DRY A;  1OIJ C;  4OJ8 A;  3MS5 A;  5HSX A;  1NX4 A;  1JR7 A;  2OG5 A;  2WBO A;  5J92 A;  4M25 A;  3EAT X;  1GVG A;  4BHG A;  4FFA A;  4YLM X;  3V17 A; 
#chains in the Genus database with same CATH topology
 3R1J A;  2WBP A;  1DRT A;  1Y0Z A;  1OTJ A;  4C5W A;  4CWD A;  4M26 A;  4M27 A;  4M2E A;  4Y0E A;  2OG7 A;  2WBQ A;  1GQW A;  1NX8 A;  4M2C A;  1DS0 A;  4BG1 A;  1VZ5 A;  4M2F A;  3N6W A;  1OIJ A;  3PVJ A;  5KEU A;  3V15 A;  1GY9 A;  4M2G A;  3SWT A;  1DS1 A;  2R6S A;  4BHF A;  1OII A;  4NE0 A;  2Q4A A;  4BHI A;  1OIJ B;  4BGM A;  1VZ4 A;  1OIH A;  4M23 A;  4M2I A;  4CVY A;  4C8R A;  3O2G A;  1YOX A;  1OIK A;  2OG6 A;  4BGK A;  4J5I A;  1OS7 A;  1PG6 A;  1DRY A;  1OIJ C;  4OJ8 A;  3MS5 A;  5HSX A;  1NX4 A;  1JR7 A;  2OG5 A;  2WBO A;  5J92 A;  4M25 A;  3EAT X;  1GVG A;  4BHG A;  4FFA A;  4YLM X;  3V17 A; 
#chains in the Genus database with same CATH homology
 3P3P A;  4JAA A;  1Y0Z A;  4CWD A;  1H2K A;  4M27 A;  2WBQ A;  1GQW A;  4BG1 A;  4M2F A;  2YDE A;  4Z1V A;  1OIJ A;  1H2M A;  3V15 A;  4AI8 A;  4M2G A;  1DS1 A;  5JWP A;  4Z2W A;  1OII A;  3O2G A;  2OG6 A;  1OIK A;  2XUM A;  1YCI A;  1OIJ C;  4OJ8 A;  1JR7 A;  2WBO A;  1MZF A;  1MZE A;  3V17 A;  4M26 A;  4M2E A;  4M2C A;  1VZ5 A;  3KCY A;  5KEU A;  1GY9 A;  3SWT A;  2R6S A;  4BHF A;  4NE0 A;  4BHI A;  1VZ4 A;  1OIH A;  4M23 A;  2CGN A;  4M2I A;  4B7E A;  4J5I A;  1OS7 A;  1DRY A;  5HSX A;  4BIO A;  5J92 A;  4M25 A;  4BHG A;  4YLM X;  1DRT A;  1OTJ A;  4Y0E A;  2OG7 A;  2YC0 A;  1NX8 A;  3N6W A;  3PVJ A;  3D8C A;  1OIJ B;  2ILM A;  4CVY A;  3KCX A;  4BGK A;  4NR1 A;  1IZ3 A;  3MS5 A;  3EAT X;  2WA3 A;  3R1J A;  2WBP A;  4C5W A;  2CGO A;  2Y0I A;  1DS0 A;  1H2L A;  2WA4 A;  2W0X A;  3OD4 A;  2Q4A A;  4BGM A;  4C8R A;  1H2N A;  1NX4 A;  2OG5 A;  4B7K A;  1GVG A;  4FFA A;  3P3N A; 
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