1JRFA

Nmr solution structure of the viral receptor domain of tva
Total Genus 3
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
3
sequence length
47
structure length
47
Chain Sequence
GSSRCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWGCGTS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Signaling protein, membrane protein
molecule keywords SUBGROUP A ROUS SARCOMA VIRUS RECEPTORS PG800 AND PG950
publication title Solution structure of the viral receptor domain of Tva and its implications in viral entry.
pubmed doi rcsb
source organism Coturnix japonica
total genus 3
structure length 47
sequence length 47
ec nomenclature
pdb deposition date 2001-08-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00057 Ldl_recept_a Low-density lipoprotein receptor domain class A
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
4.10.400.10 Few Secondary Structures Irregular Low-density Lipoprotein Receptor Low-density Lipoprotein Receptor 1jrfA00
1LDRA 2FYJA 1N7DA 2M96A 2I1PA 1D2JA 2M7PA 2LGPA 1F5YA 1CR8A 1JRFA 1J8EA 2KNXA 1LDLA 1D2LA 2JM4A 2M0PA 2FCWB 1XFEA 2KNYA 1K7BA 2FYLB
chains in the Genus database with same CATH superfamily
1LDRA 2FYJA 1N7DA 2M96A 2I1PA 1D2JA 2M7PA 2LGPA 1F5YA 1CR8A 1JRFA 1J8EA 2KNXA 1LDLA 1D2LA 2JM4A 2M0PA 2FCWB 1XFEA 2KNYA 1K7BA 2FYLB
chains in the Genus database with same CATH topology
1LDRA 2FYJA 1N7DA 2M96A 2I1PA 1D2JA 2M7PA 2LGPA 1F5YA 1CR8A 1JRFA 1J8EA 2KNXA 1LDLA 1D2LA 2JM4A 2M0PA 2FCWB 1XFEA 2KNYA 1K7BA 2FYLB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1LDR A;  2FYJ A;  1N7D A;  2M96 A;  2I1P A;  1D2J A;  2M7P A;  2LGP A;  1F5Y A;  1CR8 A;  1JRF A;  1J8E A;  2KNX A;  1LDL A;  1D2L A;  2JM4 A;  2M0P A;  2FCW B;  1XFE A;  2KNY A;  1K7B A;  2FYL B; 
#chains in the Genus database with same CATH topology
 1LDR A;  2FYJ A;  1N7D A;  2M96 A;  2I1P A;  1D2J A;  2M7P A;  2LGP A;  1F5Y A;  1CR8 A;  1JRF A;  1J8E A;  2KNX A;  1LDL A;  1D2L A;  2JM4 A;  2M0P A;  2FCW B;  1XFE A;  2KNY A;  1K7B A;  2FYL B; 
#chains in the Genus database with same CATH homology
 1LDR A;  2FYJ A;  1N7D A;  2M96 A;  2I1P A;  1D2J A;  2M7P A;  2LGP A;  1F5Y A;  1CR8 A;  1JRF A;  1J8E A;  2KNX A;  1LDL A;  1D2L A;  2JM4 A;  2M0P A;  2FCW B;  1XFE A;  2KNY A;  1K7B A;  2FYL B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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