1JRGA

Crystal structure of the r3 form of pectate lyase a, erwinia chrysanthemi
Total Genus 128
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
128
sequence length
361
structure length
354
Chain Sequence
AELVSDKALESAPTVGWASQNGFTTGGAAATSDNIYIVTNISEFTSALSAGAEAKIIQIKGTIDISGGTPYTDFADQKARSQINIPANTTVIGLGTDAKFINGSLIIDGTDGTNNVIIRNVYIQTPIDVEPHYEKGDGWNAEWDAMNITNGAHHVWIDHVTISDGNFTDDMYTTKDGETYVQHDGALDIKRGSDYVTISNSLIDQHDKTMLIGHDKGKLHVTLFNNVFNRVTERAPRVRYGSIHSFNNVFKGDAKDPVYRYQYSFGIGTSGSVLSEGNSFTIANLSASKACKVVKKFNGSIFSDNGSVLNGSAVDLSGCGFSAYTSKIPYIYDVQPMTTELAQSITDNAGSGKL
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Structure of pectate lyase A: comparison to other isoforms.
pubmed doi rcsb
molecule keywords Pectate lyase
molecule tags Lyase
source organism Erwinia chrysanthemi
total genus 128
structure length 354
sequence length 361
chains with identical sequence B
ec nomenclature ec 4.2.2.2: Pectate lyase.
pdb deposition date 2001-08-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00544 Pec_lyase_C Pectate lyase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.10 Mainly Beta 3 Solenoid Pectate Lyase C-like Single-stranded right-handed beta-helix, Pectin lyase-like 1jrgA00
4XN3A 3EQOA 4Z03A 1PXZA 1O88A 4MR0A 5C1EA 2INVA 1O8KA 2O17A 2NSTA 1BN8A 1JTAA 2NTPA 3VMWA 4YZ0A 2O0VA 4U49A 2NT6A 2PYHA 2VBMA 4XLHA 3LMWA 1X0CA 1IDKA 4NK8A 2X85A 2BSPA 4OJ5A 4AVZA 4Z06A 4XKVA 1GQ8A 3B4NA 2O04A 1O8GA 3FY3A 1OOCA 1IDJA 4YZAA 3ZSCA 1WMRA 1HG8A 4XNFA 4XMYA 1AIRA 4XN0A 4XLAA 1OGMX 1O8MA 1OGOX 4XL9A 3VSTA 1DBOA 1EE6A 1QCXA 1CZFA 2O0WA 2NSPA 3B90A 4XR6A 5AMVA 4MXNA 1PLUA 2NZMA 2VBEA 3SUCA 4I84A 2ODLA 3GQAA 4YZXA 1VBLA 4XLEA 1H80A 4W8QA 4YEJA 3KRGA 4PMHA 2Z8GA 4XKWA 1K5CA 3VMVA 4NK6A 2QX3A 2QY1A 4OJ6A 4OZZA 2PECA 2X6XA 2VJIA 2O1DA 1O8DA 4URRA 4EW9A 2X3HA 3VSVA 1RMGA 2X6WA 1OFMA 4XLCA 2IQ7A 1KCCA 1KTWA 1RWRA 4XOPA 4YELA 2UVFA 2PYGA 2INUA 2NTBA 4XQFA 1O8IA 4OZYA 1NHCA 4OJPA 1QJVA 1O8JA 4XM3A 1O8LA 1O8FA 2EWEA 3B8YA 3GRHA 4XORA 4YZQA 2NT9A 4XLFA 2VBKA 3VSUA 1O8HA 1PE9A 5C1CA 4XONA 1KCDA 3JURA 1RU4A 4W8RA 3WWGA 1XG2A 1BHEA 2VJJA 3GQ7A 4W8TA 1DBGA 3T9GA 3GQ8A 2X6YA 3UW0A 4W8SA 2NTQA 4HWVA 4OJOA 3EQNA 1JRGA 3ZPPA 1O8EA 2QXZA 4U4BA 2UVEA 4XOTA 4C2LA 4Z05A 4OJLA 1IB4A 1IA5A 3GQ9A 1OFLA
chains in the Genus database with same CATH superfamily
4XN3A 1EZGA 3EQOA 3PSZA 4Z03A 1PXZA 2BX6A 1O88A 2VFOA 2QZAA 4MR0A 4OM9A 2INVA 1O8KA 2O17A 3JX8A 5C1EA 1WXRA 1TSPA 2NSTA 1BN8A 3SYJA 3RIQA 1QA3A 1JTAA 2NTPA 2B0RA 3VMWA 2F3LA 4YZ0A 2BM4A 2O0VA 4V02C 4U49A 1LM1A 3SY2A 2NT6A 2PYHA 2VBMA 4XLHA 3LMWA 5JLVC 1X0CA 1IDKA 1EA0A 4NK8A 2X85A 1QQ1A 2BSPA 4OJ5A 1TYWA 4AVZA 1KQ5A 3DU1X 4Z06A 4XKVA 1GQ8A 3B4NA 2XC1A 2O04A 1O8GA 3FY3A 1OOCA 1IDJA 1QRCA 4YZAA 3TH0A 3ZSCA 1WMRA 1HG8A 4XNFA 3NAWA 4XMYA 1AIRA 2V5IA 2BM5A 4XN0A 5JMCB 1L1IA 4XLAA 3NB2A 1OGMX 1O8MA 3ML3A 2XT4A 1OGOX 4XL9A 3VSTA 1DBOA 1EE6A 1QCXA 1CZFA 2O0WA 2NSPA 3B90A 4XR6A 5AMVA 5DNSA 4MXNA 3LJYA 3SQVA 1HF2A 1PLUA 2NZMA 2VBEA 1OFEA 3SUCA 4I84A 3PSSA 2ODLA 3GQAA 4YZXA 1OFDA 2YUHA 1VBLA 4XLEA 1QA2A 1H80A 4YFOA 4W8QA 4YEJA 3KRGA 4PMHA 2Z8GA 4XKWA 1K5CA 3VMVA 4NK6A 2QX3A 2QY1A 4OJ6A 1DABA 4OZZA 2G0YA 4KH3A 2QYUA 4YCQA 2PECA 2X6XA 2VFPA 2VJIA 2O1DA 1O8DA 3BH7B 3N90A 4URRA 4EW9A 2X3HA 2W7ZA 3VSVA 3AK5A 1RMGA 2X6WA 2XT2A 1OFMA 3LYCA 4XLCA 2VFNA 1CLWA 2IQ7A 1KCCA 1KTWA 1RWRA 4XOPA 4YELA 2UVFA 2BM6A 2PYGA 1TYUA 1K8FA 3N6ZA 2INUA 2NTBA 2XTYA 1O8IA 4XQFA 4OZYA 1NHCA 2O6WA 1QRBA 1QJVA 2XTXA 1O8JA 4OJPA 4XM3A 1O8LA 1O8FA 2EWEA 3H09A 3P4GA 3B8YA 3GRHA 4XORA 4YZQA 4YEIA 2NT9A 4XLFA 2VBKA 2VFMA 1O8HA 1PE9A 3VSUA 2IOUG 3PETA 5C1CA 4XONA 1KCDA 3JURA 1RU4A 4JRAC 1LLZA 4W8RA 1TYXA 2VFQA 3WWGA 1XG2A 1BHEA 2J8KA 2VJJA 4YDTA 3GQ7A 3SZEA 4W8TA 1DBGA 3T9GA 2XTWA 3GQ8A 4OPWA 1LLWA 2X6YA 1QA1A 3UW0A 4W8SA 2NTQA 1TYVA 4HWVA 4OJOA 3EQNA 1JRGA 3ZPPA 1O8EA 2J8IA 2QXZA 4U4BA 2UVEA 4XOTA 4C2LA 4YC5A 3BH6B 2BM7A 1K4ZA 4Z05A 4OJLA 1IB4A 1IA5A 3GQ9A 1OFLA
chains in the Genus database with same CATH topology
4XN3A 3EQOA 4Z03A 1PXZA 1O88A 4MR0A 5C1EA 2INVA 1O8KA 2O17A 2NSTA 1BN8A 1JTAA 2NTPA 3VMWA 4YZ0A 2O0VA 4U49A 2NT6A 2PYHA 2VBMA 4XLHA 3LMWA 1X0CA 1IDKA 4NK8A 2X85A 2BSPA 4OJ5A 4AVZA 4Z06A 4XKVA 1GQ8A 3B4NA 2O04A 1O8GA 3FY3A 1OOCA 1IDJA 4YZAA 3ZSCA 1WMRA 1HG8A 4XNFA 4XMYA 1AIRA 4XN0A 4XLAA 1OGMX 1O8MA 1OGOX 4XL9A 3VSTA 1DBOA 1EE6A 1QCXA 1CZFA 2O0WA 2NSPA 3B90A 4XR6A 5AMVA 4MXNA 1PLUA 2NZMA 2VBEA 3SUCA 4I84A 2ODLA 3GQAA 4YZXA 1VBLA 4XLEA 1H80A 4W8QA 4YEJA 3KRGA 4PMHA 2Z8GA 4XKWA 1K5CA 3VMVA 4NK6A 2QX3A 2QY1A 4OJ6A 4OZZA 2PECA 2X6XA 2VJIA 2O1DA 1O8DA 4URRA 4EW9A 2X3HA 3VSVA 1RMGA 2X6WA 1OFMA 4XLCA 2IQ7A 1KCCA 1KTWA 1RWRA 4XOPA 4YELA 2UVFA 2PYGA 2INUA 2NTBA 4XQFA 1O8IA 4OZYA 1NHCA 4OJPA 1QJVA 1O8JA 4XM3A 1O8LA 1O8FA 2EWEA 3B8YA 3GRHA 4XORA 4YZQA 2NT9A 4XLFA 2VBKA 3VSUA 1O8HA 1PE9A 5C1CA 4XONA 1KCDA 3JURA 1RU4A 4W8RA 3WWGA 1XG2A 1BHEA 2VJJA 3GQ7A 4W8TA 1DBGA 3T9GA 3GQ8A 2X6YA 3UW0A 4W8SA 2NTQA 4HWVA 4OJOA 3EQNA 1JRGA 3ZPPA 1O8EA 2QXZA 4U4BA 2UVEA 4XOTA 4C2LA 4Z05A 4OJLA 1IB4A 1IA5A 3GQ9A 1OFLA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4XN3 A;  3EQO A;  4Z03 A;  1PXZ A;  1O88 A;  4MR0 A;  5C1E A;  2INV A;  1O8K A;  2O17 A;  2NST A;  1BN8 A;  1JTA A;  2NTP A;  3VMW A;  4YZ0 A;  2O0V A;  4U49 A;  2NT6 A;  2PYH A;  2VBM A;  4XLH A;  3LMW A;  1X0C A;  1IDK A;  4NK8 A;  2X85 A;  2BSP A;  4OJ5 A;  4AVZ A;  4Z06 A;  4XKV A;  1GQ8 A;  3B4N A;  2O04 A;  1O8G A;  3FY3 A;  1OOC A;  1IDJ A;  4YZA A;  3ZSC A;  1WMR A;  1HG8 A;  4XNF A;  4XMY A;  1AIR A;  4XN0 A;  4XLA A;  1OGM X;  1O8M A;  1OGO X;  4XL9 A;  3VST A;  1DBO A;  1EE6 A;  1QCX A;  1CZF A;  2O0W A;  2NSP A;  3B90 A;  4XR6 A;  5AMV A;  4MXN A;  1PLU A;  2NZM A;  2VBE A;  3SUC A;  4I84 A;  2ODL A;  3GQA A;  4YZX A;  1VBL A;  4XLE A;  1H80 A;  4W8Q A;  4YEJ A;  3KRG A;  4PMH A;  2Z8G A;  4XKW A;  1K5C A;  3VMV A;  4NK6 A;  2QX3 A;  2QY1 A;  4OJ6 A;  4OZZ A;  2PEC A;  2X6X A;  2VJI A;  2O1D A;  1O8D A;  4URR A;  4EW9 A;  2X3H A;  3VSV A;  1RMG A;  2X6W A;  1OFM A;  4XLC A;  2IQ7 A;  1KCC A;  1KTW A;  1RWR A;  4XOP A;  4YEL A;  2UVF A;  2PYG A;  2INU A;  2NTB A;  4XQF A;  1O8I A;  4OZY A;  1NHC A;  4OJP A;  1QJV A;  1O8J A;  4XM3 A;  1O8L A;  1O8F A;  2EWE A;  3B8Y A;  3GRH A;  4XOR A;  4YZQ A;  2NT9 A;  4XLF A;  2VBK A;  3VSU A;  1O8H A;  1PE9 A;  5C1C A;  4XON A;  1KCD A;  3JUR A;  1RU4 A;  4W8R A;  3WWG A;  1XG2 A;  1BHE A;  2VJJ A;  3GQ7 A;  4W8T A;  1DBG A;  3T9G A;  3GQ8 A;  2X6Y A;  3UW0 A;  4W8S A;  2NTQ A;  4HWV A;  4OJO A;  3EQN A;  1JRG A;  3ZPP A;  1O8E A;  2QXZ A;  4U4B A;  2UVE A;  4XOT A;  4C2L A;  4Z05 A;  4OJL A;  1IB4 A;  1IA5 A;  3GQ9 A;  1OFL A; 
#chains in the Genus database with same CATH topology
 4XN3 A;  1EZG A;  3EQO A;  3PSZ A;  4Z03 A;  1PXZ A;  2BX6 A;  1O88 A;  2VFO A;  2QZA A;  4MR0 A;  4OM9 A;  2INV A;  1O8K A;  2O17 A;  3JX8 A;  5C1E A;  1WXR A;  1TSP A;  2NST A;  1BN8 A;  3SYJ A;  3RIQ A;  1QA3 A;  1JTA A;  2NTP A;  2B0R A;  3VMW A;  2F3L A;  4YZ0 A;  2BM4 A;  2O0V A;  4V02 C;  4U49 A;  1LM1 A;  3SY2 A;  2NT6 A;  2PYH A;  2VBM A;  4XLH A;  3LMW A;  5JLV C;  1X0C A;  1IDK A;  1EA0 A;  4NK8 A;  2X85 A;  1QQ1 A;  2BSP A;  4OJ5 A;  1TYW A;  4AVZ A;  1KQ5 A;  3DU1 X;  4Z06 A;  4XKV A;  1GQ8 A;  3B4N A;  2XC1 A;  2O04 A;  1O8G A;  3FY3 A;  1OOC A;  1IDJ A;  1QRC A;  4YZA A;  3TH0 A;  3ZSC A;  1WMR A;  1HG8 A;  4XNF A;  3NAW A;  4XMY A;  1AIR A;  2V5I A;  2BM5 A;  4XN0 A;  5JMC B;  1L1I A;  4XLA A;  3NB2 A;  1OGM X;  1O8M A;  3ML3 A;  2XT4 A;  1OGO X;  4XL9 A;  3VST A;  1DBO A;  1EE6 A;  1QCX A;  1CZF A;  2O0W A;  2NSP A;  3B90 A;  4XR6 A;  5AMV A;  5DNS A;  4MXN A;  3LJY A;  3SQV A;  1HF2 A;  1PLU A;  2NZM A;  2VBE A;  1OFE A;  3SUC A;  4I84 A;  3PSS A;  2ODL A;  3GQA A;  4YZX A;  1OFD A;  2YUH A;  1VBL A;  4XLE A;  1QA2 A;  1H80 A;  4YFO A;  4W8Q A;  4YEJ A;  3KRG A;  4PMH A;  2Z8G A;  4XKW A;  1K5C A;  3VMV A;  4NK6 A;  2QX3 A;  2QY1 A;  4OJ6 A;  1DAB A;  4OZZ A;  2G0Y A;  4KH3 A;  2QYU A;  4YCQ A;  2PEC A;  2X6X A;  2VFP A;  2VJI A;  2O1D A;  1O8D A;  3BH7 B;  3N90 A;  4URR A;  4EW9 A;  2X3H A;  2W7Z A;  3VSV A;  3AK5 A;  1RMG A;  2X6W A;  2XT2 A;  1OFM A;  3LYC A;  4XLC A;  2VFN A;  1CLW A;  2IQ7 A;  1KCC A;  1KTW A;  1RWR A;  4XOP A;  4YEL A;  2UVF A;  2BM6 A;  2PYG A;  1TYU A;  1K8F A;  3N6Z A;  2INU A;  2NTB A;  2XTY A;  1O8I A;  4XQF A;  4OZY A;  1NHC A;  2O6W A;  1QRB A;  1QJV A;  2XTX A;  1O8J A;  4OJP A;  4XM3 A;  1O8L A;  1O8F A;  2EWE A;  3H09 A;  3P4G A;  3B8Y A;  3GRH A;  4XOR A;  4YZQ A;  4YEI A;  2NT9 A;  4XLF A;  2VBK A;  2VFM A;  1O8H A;  1PE9 A;  3VSU A;  2IOU G;  3PET A;  5C1C A;  4XON A;  1KCD A;  3JUR A;  1RU4 A;  4JRA C;  1LLZ A;  4W8R A;  1TYX A;  2VFQ A;  3WWG A;  1XG2 A;  1BHE A;  2J8K A;  2VJJ A;  4YDT A;  3GQ7 A;  3SZE A;  4W8T A;  1DBG A;  3T9G A;  2XTW A;  3GQ8 A;  4OPW A;  1LLW A;  2X6Y A;  1QA1 A;  3UW0 A;  4W8S A;  2NTQ A;  1TYV A;  4HWV A;  4OJO A;  3EQN A;  1JRG A;  3ZPP A;  1O8E A;  2J8I A;  2QXZ A;  4U4B A;  2UVE A;  4XOT A;  4C2L A;  4YC5 A;  3BH6 B;  2BM7 A;  1K4Z A;  4Z05 A;  4OJL A;  1IB4 A;  1IA5 A;  3GQ9 A;  1OFL A; 
#chains in the Genus database with same CATH homology
 4XN3 A;  3EQO A;  4Z03 A;  1PXZ A;  1O88 A;  4MR0 A;  5C1E A;  2INV A;  1O8K A;  2O17 A;  2NST A;  1BN8 A;  1JTA A;  2NTP A;  3VMW A;  4YZ0 A;  2O0V A;  4U49 A;  2NT6 A;  2PYH A;  2VBM A;  4XLH A;  3LMW A;  1X0C A;  1IDK A;  4NK8 A;  2X85 A;  2BSP A;  4OJ5 A;  4AVZ A;  4Z06 A;  4XKV A;  1GQ8 A;  3B4N A;  2O04 A;  1O8G A;  3FY3 A;  1OOC A;  1IDJ A;  4YZA A;  3ZSC A;  1WMR A;  1HG8 A;  4XNF A;  4XMY A;  1AIR A;  4XN0 A;  4XLA A;  1OGM X;  1O8M A;  1OGO X;  4XL9 A;  3VST A;  1DBO A;  1EE6 A;  1QCX A;  1CZF A;  2O0W A;  2NSP A;  3B90 A;  4XR6 A;  5AMV A;  4MXN A;  1PLU A;  2NZM A;  2VBE A;  3SUC A;  4I84 A;  2ODL A;  3GQA A;  4YZX A;  1VBL A;  4XLE A;  1H80 A;  4W8Q A;  4YEJ A;  3KRG A;  4PMH A;  2Z8G A;  4XKW A;  1K5C A;  3VMV A;  4NK6 A;  2QX3 A;  2QY1 A;  4OJ6 A;  4OZZ A;  2PEC A;  2X6X A;  2VJI A;  2O1D A;  1O8D A;  4URR A;  4EW9 A;  2X3H A;  3VSV A;  1RMG A;  2X6W A;  1OFM A;  4XLC A;  2IQ7 A;  1KCC A;  1KTW A;  1RWR A;  4XOP A;  4YEL A;  2UVF A;  2PYG A;  2INU A;  2NTB A;  4XQF A;  1O8I A;  4OZY A;  1NHC A;  4OJP A;  1QJV A;  1O8J A;  4XM3 A;  1O8L A;  1O8F A;  2EWE A;  3B8Y A;  3GRH A;  4XOR A;  4YZQ A;  2NT9 A;  4XLF A;  2VBK A;  3VSU A;  1O8H A;  1PE9 A;  5C1C A;  4XON A;  1KCD A;  3JUR A;  1RU4 A;  4W8R A;  3WWG A;  1XG2 A;  1BHE A;  2VJJ A;  3GQ7 A;  4W8T A;  1DBG A;  3T9G A;  3GQ8 A;  2X6Y A;  3UW0 A;  4W8S A;  2NTQ A;  4HWV A;  4OJO A;  3EQN A;  1JRG A;  3ZPP A;  1O8E A;  2QXZ A;  4U4B A;  2UVE A;  4XOT A;  4C2L A;  4Z05 A;  4OJL A;  1IB4 A;  1IA5 A;  3GQ9 A;  1OFL A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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