1JRGA

Crystal structure of the r3 form of pectate lyase a, erwinia chrysanthemi
Total Genus 128
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
128
sequence length
361
structure length
354
Chain Sequence
AELVSDKALESAPTVGWASQNGFTTGGAAATSDNIYIVTNISEFTSALSAGAEAKIIQIKGTIDISGGTPYTDFADQKARSQINIPANTTVIGLGTDAKFINGSLIIDGTDGTNNVIIRNVYIQTPIDVEPHYEKGDGWNAEWDAMNITNGAHHVWIDHVTISDGNFTDDMYTTKDGETYVQHDGALDIKRGSDYVTISNSLIDQHDKTMLIGHDKGKLHVTLFNNVFNRVTERAPRVRYGSIHSFNNVFKGDAKDPVYRYQYSFGIGTSGSVLSEGNSFTIANLSASKACKVVKKFNGSIFSDNGSVLNGSAVDLSGCGFSAYTSKIPYIYDVQPMTTELAQSITDNAGSGKL
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Structure of pectate lyase A: comparison to other isoforms.
pubmed doi rcsb
source organism Erwinia chrysanthemi
molecule tags Lyase
molecule keywords Pectate lyase
total genus 128
structure length 354
sequence length 361
chains with identical sequence B
ec nomenclature ec 4.2.2.2: Pectate lyase.
pdb deposition date 2001-08-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00544 Pec_lyase_C Pectate lyase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.10 Mainly Beta 3 Solenoid Pectate Lyase C-like Single-stranded right-handed beta-helix, Pectin lyase-like 1jrgA00
1O8FA 1OFMA 2UVEA 1O8DA 4MXNA 4MR0A 1PXZA 1DBGA 2VBKA 3ZPPA 4HWVA 2VBEA 1HG8A 2PECA 4XN3A 3VSVA 4XLCA 2PYGA 4XORA 1BN8A 3B8YA 4XQFA 1O8JA 3VMWA 3JURA 3EQOA 4EW9A 4NK8A 2O0VA 4I84A 1IB4A 5C1EA 2QY1A 1WMRA 3VSTA 5C1CA 2X6XA 4AVZA 4OJ6A 3GQ8A 4YZAA 4XL9A 4U4BA 2ODLA 2INUA 2NTPA 4XLAA 4XNFA 1O8HA 1O8GA 4C2LA 2BSPA 4Z06A 4YZ0A 2UVFA 1IDKA 3GQ7A 2NTQA 1EE6A 1O88A 1QCXA 4YZXA 1PLUA 1VBLA 4Z05A 1OGMX 2O04A 3GRHA 4URRA 1RU4A 2INVA 2Z8GA 4OJOA 1NHCA 3LMWA 2X85A 2NSTA 4OJ5A 4XN0A 4XONA 1OFLA 1QJVA 3FY3A 2NT9A 1GQ8A 4W8QA 4XKWA 4YELA 3GQAA 1O8EA 1X0CA 3B4NA 1K5CA 1IDJA 4YEJA 3EQNA 1CZFA 2IQ7A 2QX3A 4XMYA 2NZMA 2VJJA 3UW0A 1XG2A 3WWGA 4PMHA 2NT6A 1O8LA 1JTAA 1O8KA 1KCDA 2EWEA 1JRGA 4U49A 1KCCA 2NSPA 5AMVA 2PYHA 1BHEA 1H80A 4OJLA 3KRGA 3SUCA 4OZZA 4W8RA 1OOCA 1PE9A 4XM3A 1RMGA 3T9GA 2X6YA 3GQ9A 2VJIA 4XR6A 1O8MA 1AIRA 4XLEA 3B90A 4XOPA 2O17A 1O8IA 4Z03A 4XKVA 2X3HA 2NTBA 1IA5A 4NK6A 3VSUA 2X6WA 1KTWA 2O0WA 4OZYA 4W8SA 2QXZA 4XOTA 2O1DA 4XLHA 1RWRA 1DBOA 3VMVA 3ZSCA 4OJPA 4W8TA 4YZQA 2VBMA 1OGOX 4XLFA
chains in the Genus database with same CATH superfamily
1O8FA 1OFMA 4OPWA 2UVEA 2J8KA 1O8DA 3PSSA 4MR0A 1PXZA 1DBGA 2VBKA 3JX8A 4MXNA 4HWVA 2VBEA 1HG8A 3TH0A 3ZPPA 2XC1A 2IOUG 1TSPA 2PECA 1WXRA 2VFPA 4XN3A 3VSVA 3SY2A 2XTXA 4XLCA 2PYGA 4XORA 1LLWA 1BN8A 2G0YA 3B8YA 4XQFA 1O8JA 3VMWA 1HF2A 2XTYA 3LJYA 3JURA 3EQOA 1QA1A 2YUHA 4EW9A 1QA2A 4NK8A 2VFQA 1K8FA 2O0VA 4I84A 5JMCB 1IB4A 5C1EA 2QY1A 1WMRA 3VSTA 5C1CA 2X6XA 1DABA 2XTWA 4AVZA 4OJ6A 2BM6A 3GQ8A 4YZAA 4XL9A 4U4BA 2ODLA 2INUA 2BX6A 2NTPA 3PSZA 4XLAA 1O8HA 1O8GA 4XNFA 2BSPA 4C2LA 4YC5A 2W7ZA 4Z06A 4YZ0A 1OFEA 4YCQA 2UVFA 1IDKA 3GQ7A 1K4ZA 1EE6A 1O88A 1QCXA 2NTQA 4YZXA 1PLUA 5DNSA 1VBLA 4Z05A 1OGMX 2O04A 3GRHA 4URRA 3P4GA 1RU4A 2INVA 2O6WA 2Z8GA 3BH7B 3LMWA 4OJOA 1NHCA 2X85A 2NSTA 4OJ5A 4XN0A 4XONA 1OFLA 1QJVA 2VFMA 1TYVA 3FY3A 1EZGA 3ML3A 2NT9A 3N6ZA 4KH3A 1EA0A 1TYXA 2QZAA 1GQ8A 4JRAC 4W8QA 4YEIA 2B0RA 4XKWA 2F3LA 4YELA 3GQAA 3SQVA 1O8EA 1X0CA 1QQ1A 3B4NA 1K5CA 1IDJA 3NAWA 4YEJA 3EQNA 1CZFA 2IQ7A 2QX3A 4XMYA 2NZMA 3AK5A 3NB2A 5JLVC 2VJJA 3UW0A 1XG2A 3WWGA 4PMHA 1LM1A 1TYUA 2NT6A 1O8LA 1JTAA 1CLWA 1O8KA 1QRCA 1KCDA 4OM9A 1LLZA 2EWEA 1JRGA 2XT4A 4U49A 3N90A 1KCCA 3H09A 2NSPA 2BM7A 5AMVA 1OFDA 1QRBA 2PYHA 1BHEA 2VFOA 4V02C 1H80A 4OJLA 3RIQA 3SYJA 3KRGA 2J8IA 3SUCA 4OZZA 3PETA 4W8RA 1OOCA 1PE9A 4XM3A 1RMGA 3T9GA 2X6YA 3GQ9A 1KQ5A 2VJIA 4XR6A 1O8MA 1AIRA 4XLEA 3B90A 4XOPA 2O17A 4YDTA 2V5IA 1O8IA 4Z03A 2BM4A 4XKVA 2X3HA 2NTBA 2QYUA 1IA5A 2XT2A 2VFNA 4NK6A 3VSUA 2X6WA 3DU1X 1KTWA 2O0WA 4OZYA 4W8SA 3BH6B 2QXZA 4XOTA 2O1DA 3LYCA 1RWRA 1DBOA 4XLHA 3VMVA 3ZSCA 4OJPA 4W8TA 3SZEA 1QA3A 4YZQA 1TYWA 2VBMA 2BM5A 4YFOA 1L1IA 1OGOX 4XLFA
chains in the Genus database with same CATH topology
1O8FA 1OFMA 2UVEA 1O8DA 4MXNA 4MR0A 1PXZA 1DBGA 2VBKA 3ZPPA 4HWVA 2VBEA 1HG8A 2PECA 4XN3A 3VSVA 4XLCA 2PYGA 4XORA 1BN8A 3B8YA 4XQFA 1O8JA 3VMWA 3JURA 3EQOA 4EW9A 4NK8A 2O0VA 4I84A 1IB4A 5C1EA 2QY1A 1WMRA 3VSTA 5C1CA 2X6XA 4AVZA 4OJ6A 3GQ8A 4YZAA 4XL9A 4U4BA 2ODLA 2INUA 2NTPA 4XLAA 4XNFA 1O8HA 1O8GA 4C2LA 2BSPA 4Z06A 4YZ0A 2UVFA 1IDKA 3GQ7A 2NTQA 1EE6A 1O88A 1QCXA 4YZXA 1PLUA 1VBLA 4Z05A 1OGMX 2O04A 3GRHA 4URRA 1RU4A 2INVA 2Z8GA 4OJOA 1NHCA 3LMWA 2X85A 2NSTA 4OJ5A 4XN0A 4XONA 1OFLA 1QJVA 3FY3A 2NT9A 1GQ8A 4W8QA 4XKWA 4YELA 3GQAA 1O8EA 1X0CA 3B4NA 1K5CA 1IDJA 4YEJA 3EQNA 1CZFA 2IQ7A 2QX3A 4XMYA 2NZMA 2VJJA 3UW0A 1XG2A 3WWGA 4PMHA 2NT6A 1O8LA 1JTAA 1O8KA 1KCDA 2EWEA 1JRGA 4U49A 1KCCA 2NSPA 5AMVA 2PYHA 1BHEA 1H80A 4OJLA 3KRGA 3SUCA 4OZZA 4W8RA 1OOCA 1PE9A 4XM3A 1RMGA 3T9GA 2X6YA 3GQ9A 2VJIA 4XR6A 1O8MA 1AIRA 4XLEA 3B90A 4XOPA 2O17A 1O8IA 4Z03A 4XKVA 2X3HA 2NTBA 1IA5A 4NK6A 3VSUA 2X6WA 1KTWA 2O0WA 4OZYA 4W8SA 2QXZA 4XOTA 2O1DA 4XLHA 1RWRA 1DBOA 3VMVA 3ZSCA 4OJPA 4W8TA 4YZQA 2VBMA 1OGOX 4XLFA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1O8F A;  1OFM A;  2UVE A;  1O8D A;  4MXN A;  4MR0 A;  1PXZ A;  1DBG A;  2VBK A;  3ZPP A;  4HWV A;  2VBE A;  1HG8 A;  2PEC A;  4XN3 A;  3VSV A;  4XLC A;  2PYG A;  4XOR A;  1BN8 A;  3B8Y A;  4XQF A;  1O8J A;  3VMW A;  3JUR A;  3EQO A;  4EW9 A;  4NK8 A;  2O0V A;  4I84 A;  1IB4 A;  5C1E A;  2QY1 A;  1WMR A;  3VST A;  5C1C A;  2X6X A;  4AVZ A;  4OJ6 A;  3GQ8 A;  4YZA A;  4XL9 A;  4U4B A;  2ODL A;  2INU A;  2NTP A;  4XLA A;  4XNF A;  1O8H A;  1O8G A;  4C2L A;  2BSP A;  4Z06 A;  4YZ0 A;  2UVF A;  1IDK A;  3GQ7 A;  2NTQ A;  1EE6 A;  1O88 A;  1QCX A;  4YZX A;  1PLU A;  1VBL A;  4Z05 A;  1OGM X;  2O04 A;  3GRH A;  4URR A;  1RU4 A;  2INV A;  2Z8G A;  4OJO A;  1NHC A;  3LMW A;  2X85 A;  2NST A;  4OJ5 A;  4XN0 A;  4XON A;  1OFL A;  1QJV A;  3FY3 A;  2NT9 A;  1GQ8 A;  4W8Q A;  4XKW A;  4YEL A;  3GQA A;  1O8E A;  1X0C A;  3B4N A;  1K5C A;  1IDJ A;  4YEJ A;  3EQN A;  1CZF A;  2IQ7 A;  2QX3 A;  4XMY A;  2NZM A;  2VJJ A;  3UW0 A;  1XG2 A;  3WWG A;  4PMH A;  2NT6 A;  1O8L A;  1JTA A;  1O8K A;  1KCD A;  2EWE A;  1JRG A;  4U49 A;  1KCC A;  2NSP A;  5AMV A;  2PYH A;  1BHE A;  1H80 A;  4OJL A;  3KRG A;  3SUC A;  4OZZ A;  4W8R A;  1OOC A;  1PE9 A;  4XM3 A;  1RMG A;  3T9G A;  2X6Y A;  3GQ9 A;  2VJI A;  4XR6 A;  1O8M A;  1AIR A;  4XLE A;  3B90 A;  4XOP A;  2O17 A;  1O8I A;  4Z03 A;  4XKV A;  2X3H A;  2NTB A;  1IA5 A;  4NK6 A;  3VSU A;  2X6W A;  1KTW A;  2O0W A;  4OZY A;  4W8S A;  2QXZ A;  4XOT A;  2O1D A;  4XLH A;  1RWR A;  1DBO A;  3VMV A;  3ZSC A;  4OJP A;  4W8T A;  4YZQ A;  2VBM A;  1OGO X;  4XLF A; 
#chains in the Genus database with same CATH topology
 1O8F A;  1OFM A;  4OPW A;  2UVE A;  2J8K A;  1O8D A;  3PSS A;  4MR0 A;  1PXZ A;  1DBG A;  2VBK A;  3JX8 A;  4MXN A;  4HWV A;  2VBE A;  1HG8 A;  3TH0 A;  3ZPP A;  2XC1 A;  2IOU G;  1TSP A;  2PEC A;  1WXR A;  2VFP A;  4XN3 A;  3VSV A;  3SY2 A;  2XTX A;  4XLC A;  2PYG A;  4XOR A;  1LLW A;  1BN8 A;  2G0Y A;  3B8Y A;  4XQF A;  1O8J A;  3VMW A;  1HF2 A;  2XTY A;  3LJY A;  3JUR A;  3EQO A;  1QA1 A;  2YUH A;  4EW9 A;  1QA2 A;  4NK8 A;  2VFQ A;  1K8F A;  2O0V A;  4I84 A;  5JMC B;  1IB4 A;  5C1E A;  2QY1 A;  1WMR A;  3VST A;  5C1C A;  2X6X A;  1DAB A;  2XTW A;  4AVZ A;  4OJ6 A;  2BM6 A;  3GQ8 A;  4YZA A;  4XL9 A;  4U4B A;  2ODL A;  2INU A;  2BX6 A;  2NTP A;  3PSZ A;  4XLA A;  1O8H A;  1O8G A;  4XNF A;  2BSP A;  4C2L A;  4YC5 A;  2W7Z A;  4Z06 A;  4YZ0 A;  1OFE A;  4YCQ A;  2UVF A;  1IDK A;  3GQ7 A;  1K4Z A;  1EE6 A;  1O88 A;  1QCX A;  2NTQ A;  4YZX A;  1PLU A;  5DNS A;  1VBL A;  4Z05 A;  1OGM X;  2O04 A;  3GRH A;  4URR A;  3P4G A;  1RU4 A;  2INV A;  2O6W A;  2Z8G A;  3BH7 B;  3LMW A;  4OJO A;  1NHC A;  2X85 A;  2NST A;  4OJ5 A;  4XN0 A;  4XON A;  1OFL A;  1QJV A;  2VFM A;  1TYV A;  3FY3 A;  1EZG A;  3ML3 A;  2NT9 A;  3N6Z A;  4KH3 A;  1EA0 A;  1TYX A;  2QZA A;  1GQ8 A;  4JRA C;  4W8Q A;  4YEI A;  2B0R A;  4XKW A;  2F3L A;  4YEL A;  3GQA A;  3SQV A;  1O8E A;  1X0C A;  1QQ1 A;  3B4N A;  1K5C A;  1IDJ A;  3NAW A;  4YEJ A;  3EQN A;  1CZF A;  2IQ7 A;  2QX3 A;  4XMY A;  2NZM A;  3AK5 A;  3NB2 A;  5JLV C;  2VJJ A;  3UW0 A;  1XG2 A;  3WWG A;  4PMH A;  1LM1 A;  1TYU A;  2NT6 A;  1O8L A;  1JTA A;  1CLW A;  1O8K A;  1QRC A;  1KCD A;  4OM9 A;  1LLZ A;  2EWE A;  1JRG A;  2XT4 A;  4U49 A;  3N90 A;  1KCC A;  3H09 A;  2NSP A;  2BM7 A;  5AMV A;  1OFD A;  1QRB A;  2PYH A;  1BHE A;  2VFO A;  4V02 C;  1H80 A;  4OJL A;  3RIQ A;  3SYJ A;  3KRG A;  2J8I A;  3SUC A;  4OZZ A;  3PET A;  4W8R A;  1OOC A;  1PE9 A;  4XM3 A;  1RMG A;  3T9G A;  2X6Y A;  3GQ9 A;  1KQ5 A;  2VJI A;  4XR6 A;  1O8M A;  1AIR A;  4XLE A;  3B90 A;  4XOP A;  2O17 A;  4YDT A;  2V5I A;  1O8I A;  4Z03 A;  2BM4 A;  4XKV A;  2X3H A;  2NTB A;  2QYU A;  1IA5 A;  2XT2 A;  2VFN A;  4NK6 A;  3VSU A;  2X6W A;  3DU1 X;  1KTW A;  2O0W A;  4OZY A;  4W8S A;  3BH6 B;  2QXZ A;  4XOT A;  2O1D A;  3LYC A;  1RWR A;  1DBO A;  4XLH A;  3VMV A;  3ZSC A;  4OJP A;  4W8T A;  3SZE A;  1QA3 A;  4YZQ A;  1TYW A;  2VBM A;  2BM5 A;  4YFO A;  1L1I A;  1OGO X;  4XLF A; 
#chains in the Genus database with same CATH homology
 1O8F A;  1OFM A;  2UVE A;  1O8D A;  4MXN A;  4MR0 A;  1PXZ A;  1DBG A;  2VBK A;  3ZPP A;  4HWV A;  2VBE A;  1HG8 A;  2PEC A;  4XN3 A;  3VSV A;  4XLC A;  2PYG A;  4XOR A;  1BN8 A;  3B8Y A;  4XQF A;  1O8J A;  3VMW A;  3JUR A;  3EQO A;  4EW9 A;  4NK8 A;  2O0V A;  4I84 A;  1IB4 A;  5C1E A;  2QY1 A;  1WMR A;  3VST A;  5C1C A;  2X6X A;  4AVZ A;  4OJ6 A;  3GQ8 A;  4YZA A;  4XL9 A;  4U4B A;  2ODL A;  2INU A;  2NTP A;  4XLA A;  4XNF A;  1O8H A;  1O8G A;  4C2L A;  2BSP A;  4Z06 A;  4YZ0 A;  2UVF A;  1IDK A;  3GQ7 A;  2NTQ A;  1EE6 A;  1O88 A;  1QCX A;  4YZX A;  1PLU A;  1VBL A;  4Z05 A;  1OGM X;  2O04 A;  3GRH A;  4URR A;  1RU4 A;  2INV A;  2Z8G A;  4OJO A;  1NHC A;  3LMW A;  2X85 A;  2NST A;  4OJ5 A;  4XN0 A;  4XON A;  1OFL A;  1QJV A;  3FY3 A;  2NT9 A;  1GQ8 A;  4W8Q A;  4XKW A;  4YEL A;  3GQA A;  1O8E A;  1X0C A;  3B4N A;  1K5C A;  1IDJ A;  4YEJ A;  3EQN A;  1CZF A;  2IQ7 A;  2QX3 A;  4XMY A;  2NZM A;  2VJJ A;  3UW0 A;  1XG2 A;  3WWG A;  4PMH A;  2NT6 A;  1O8L A;  1JTA A;  1O8K A;  1KCD A;  2EWE A;  1JRG A;  4U49 A;  1KCC A;  2NSP A;  5AMV A;  2PYH A;  1BHE A;  1H80 A;  4OJL A;  3KRG A;  3SUC A;  4OZZ A;  4W8R A;  1OOC A;  1PE9 A;  4XM3 A;  1RMG A;  3T9G A;  2X6Y A;  3GQ9 A;  2VJI A;  4XR6 A;  1O8M A;  1AIR A;  4XLE A;  3B90 A;  4XOP A;  2O17 A;  1O8I A;  4Z03 A;  4XKV A;  2X3H A;  2NTB A;  1IA5 A;  4NK6 A;  3VSU A;  2X6W A;  1KTW A;  2O0W A;  4OZY A;  4W8S A;  2QXZ A;  4XOT A;  2O1D A;  4XLH A;  1RWR A;  1DBO A;  3VMV A;  3ZSC A;  4OJP A;  4W8T A;  4YZQ A;  2VBM A;  1OGO X;  4XLF A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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