1JRGA

Crystal structure of the r3 form of pectate lyase a, erwinia chrysanthemi
Total Genus 128
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
128
sequence length
361
structure length
354
Chain Sequence
AELVSDKALESAPTVGWASQNGFTTGGAAATSDNIYIVTNISEFTSALSAGAEAKIIQIKGTIDISGGTPYTDFADQKARSQINIPANTTVIGLGTDAKFINGSLIIDGTDGTNNVIIRNVYIQTPIDVEPHYEKGDGWNAEWDAMNITNGAHHVWIDHVTISDGNFTDDMYTTKDGETYVQHDGALDIKRGSDYVTISNSLIDQHDKTMLIGHDKGKLHVTLFNNVFNRVTERAPRVRYGSIHSFNNVFKGDAKDPVYRYQYSFGIGTSGSVLSEGNSFTIANLSASKACKVVKKFNGSIFSDNGSVLNGSAVDLSGCGFSAYTSKIPYIYDVQPMTTELAQSITDNAGSGKL
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Structure of pectate lyase A: comparison to other isoforms.
pubmed doi rcsb
source organism Erwinia chrysanthemi
molecule tags Lyase
molecule keywords Pectate lyase
total genus 128
structure length 354
sequence length 361
chains with identical sequence B
ec nomenclature ec 4.2.2.2: Pectate lyase.
pdb deposition date 2001-08-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00544 Pec_lyase_C Pectate lyase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.10 Mainly Beta 3 Solenoid Pectate Lyase C-like Single-stranded right-handed beta-helix, Pectin lyase-like 1jrgA00
4MR0A 4XQFA 2VJIA 2O0WA 2X6YA 1HG8A 2O1DA 3FY3A 1O8EA 4OJPA 4XONA 1AIRA 4YEJA 4XM3A 3VSTA 2Z8GA 4YZ0A 1QJVA 5AMVA 2INVA 4OJ5A 4W8SA 1DBGA 4W8QA 2X6XA 3VSVA 4YZAA 3VMWA 1KCDA 1OGMX 1K5CA 2NTBA 4OJLA 1OGOX 4XOPA 1XG2A 1O8IA 1O8JA 3KRGA 3B90A 1BHEA 3VSUA 1O8KA 4XLAA 4W8RA 4XLFA 4MXNA 4PMHA 4OZZA 4Z06A 4XLCA 1O8GA 1IA5A 4XLEA 3B4NA 3GQ8A 3T9GA 2O0VA 2EWEA 4OJOA 3GRHA 4XN3A 2VBMA 4XNFA 4OZYA 3VMVA 1CZFA 2NSPA 1QCXA 1RU4A 2NT9A 1GQ8A 1X0CA 4YZQA 1PE9A 1O8DA 2NSTA 2VBEA 2BSPA 2PECA 1EE6A 4XL9A 2QY1A 5C1EA 2X6WA 4XN0A 2INUA 3UW0A 4Z03A 1OOCA 2QXZA 1WMRA 4HWVA 1RMGA 3EQNA 4XMYA 4YZXA 3LMWA 1O8LA 4XOTA 4AVZA 5C1CA 2QX3A 1PLUA 1RWRA 1KTWA 4XKVA 2O04A 2X3HA 4C2LA 4YELA 1JTAA 1DBOA 2UVFA 2X85A 4XLHA 2ODLA 2IQ7A 1BN8A 4U4BA 3WWGA 3GQ7A 3JURA 3SUCA 4NK8A 4XKWA 1OFLA 4EW9A 1PXZA 3GQ9A 2NTPA 4OJ6A 2NTQA 3GQAA 1O8FA 1OFMA 2NT6A 2NZMA 2UVEA 4XR6A 4W8TA 4NK6A 1O8HA 1VBLA 1IDJA 3ZSCA 1IDKA 1O88A 2PYHA 3B8YA 1NHCA 2PYGA 4I84A 1IB4A 3EQOA 2O17A 3ZPPA 4URRA 1JRGA 1KCCA 1H80A 4U49A 1O8MA 4Z05A 2VJJA 4XORA 2VBKA
chains in the Genus database with same CATH superfamily
4MR0A 4XQFA 2VJIA 2O0WA 2X6YA 1HG8A 2O1DA 3FY3A 3N6ZA 1O8EA 3SY2A 4OJPA 4XONA 1HF2A 1AIRA 4KH3A 4XM3A 4YEJA 3VSTA 2Z8GA 4YZ0A 1QJVA 2XTXA 1K8FA 5AMVA 2INVA 4OJ5A 4W8SA 3SZEA 2W7ZA 3DU1X 1DBGA 4W8QA 3TH0A 2X6XA 3VSVA 4YZAA 3VMWA 1KCDA 1OGMX 1K5CA 2BX6A 2NTBA 3PETA 4OJLA 1OGOX 1QQ1A 4XOPA 1XG2A 2V5IA 1O8IA 1O8JA 3KRGA 4OM9A 3B90A 2J8IA 1KQ5A 3SYJA 1BHEA 1TYWA 3VSUA 1O8KA 4XLAA 4W8RA 4XLFA 4MXNA 5JMCB 3NAWA 4PMHA 4OZZA 2BM7A 2XTWA 4XLCA 4Z06A 1O8GA 1IA5A 3JX8A 3B4NA 4XLEA 3H09A 3GQ8A 3T9GA 3BH7B 2O0VA 2EWEA 4OJOA 3GRHA 4YEIA 4XN3A 4OPWA 2VBMA 3LYCA 4XNFA 4OZYA 3VMVA 1CZFA 4JRAC 2NSPA 3SQVA 1QCXA 3RIQA 1RU4A 2NT9A 1GQ8A 1X0CA 4YZQA 1PE9A 3NB2A 1O8DA 2NSTA 2B0RA 2VBEA 5JLVC 2VFMA 2BSPA 2PECA 1EE6A 2VFQA 4XL9A 2QY1A 5C1EA 2XTYA 2X6WA 4XN0A 2INUA 3UW0A 4Z03A 1OOCA 3ML3A 2QZAA 2QXZA 3BH6B 1WMRA 4HWVA 1DABA 1RMGA 3EQNA 2VFPA 4XMYA 4YZXA 2XT2A 3LMWA 1TYVA 3PSZA 1QA3A 1O8LA 4XOTA 4AVZA 5C1CA 2F3LA 2QX3A 2BM6A 2G0YA 1PLUA 1RWRA 2VFOA 3AK5A 1KTWA 1QA2A 4XKVA 2XT4A 2O04A 2X3HA 4C2LA 4YELA 1JTAA 1DBOA 2UVFA 2X85A 2XC1A 1QRBA 4XLHA 2ODLA 1WXRA 4YC5A 2IQ7A 4YDTA 1BN8A 1EZGA 4U4BA 4YCQA 3WWGA 3GQ7A 3JURA 3N90A 3SUCA 4NK8A 1TYUA 3LJYA 4XKWA 1OFLA 1TYXA 2VFNA 1PXZA 1QRCA 3GQ9A 2NTPA 4EW9A 4OJ6A 1EA0A 2NTQA 3GQAA 1O8FA 5DNSA 1OFMA 1LM1A 2NT6A 1LLZA 2NZMA 2UVEA 4XR6A 4W8TA 4NK6A 1O8HA 1VBLA 2J8KA 1IDJA 1K4ZA 3ZSCA 1IDKA 1O88A 2PYHA 3B8YA 3PSSA 4V02C 1NHCA 2PYGA 2QYUA 4I84A 1IB4A 3EQOA 2O17A 3ZPPA 4URRA 1JRGA 1TSPA 1OFEA 1QA1A 1KCCA 2IOUG 2BM5A 1H80A 4YFOA 2BM4A 3P4GA 4U49A 1L1IA 1LLWA 1OFDA 1O8MA 4Z05A 2VJJA 2YUHA 1CLWA 4XORA 2O6WA 2VBKA
chains in the Genus database with same CATH topology
4MR0A 4XQFA 2VJIA 2O0WA 2X6YA 1HG8A 2O1DA 3FY3A 1O8EA 4OJPA 4XONA 1AIRA 4YEJA 4XM3A 3VSTA 2Z8GA 4YZ0A 1QJVA 5AMVA 2INVA 4OJ5A 4W8SA 1DBGA 4W8QA 2X6XA 3VSVA 4YZAA 3VMWA 1KCDA 1OGMX 1K5CA 2NTBA 4OJLA 1OGOX 4XOPA 1XG2A 1O8IA 1O8JA 3KRGA 3B90A 1BHEA 3VSUA 1O8KA 4XLAA 4W8RA 4XLFA 4MXNA 4PMHA 4OZZA 4Z06A 4XLCA 1O8GA 1IA5A 4XLEA 3B4NA 3GQ8A 3T9GA 2O0VA 2EWEA 4OJOA 3GRHA 4XN3A 2VBMA 4XNFA 4OZYA 3VMVA 1CZFA 2NSPA 1QCXA 1RU4A 2NT9A 1GQ8A 1X0CA 4YZQA 1PE9A 1O8DA 2NSTA 2VBEA 2BSPA 2PECA 1EE6A 4XL9A 2QY1A 5C1EA 2X6WA 4XN0A 2INUA 3UW0A 4Z03A 1OOCA 2QXZA 1WMRA 4HWVA 1RMGA 3EQNA 4XMYA 4YZXA 3LMWA 1O8LA 4XOTA 4AVZA 5C1CA 2QX3A 1PLUA 1RWRA 1KTWA 4XKVA 2O04A 2X3HA 4C2LA 4YELA 1JTAA 1DBOA 2UVFA 2X85A 4XLHA 2ODLA 2IQ7A 1BN8A 4U4BA 3WWGA 3GQ7A 3JURA 3SUCA 4NK8A 4XKWA 1OFLA 4EW9A 1PXZA 3GQ9A 2NTPA 4OJ6A 2NTQA 3GQAA 1O8FA 1OFMA 2NT6A 2NZMA 2UVEA 4XR6A 4W8TA 4NK6A 1O8HA 1VBLA 1IDJA 3ZSCA 1IDKA 1O88A 2PYHA 3B8YA 1NHCA 2PYGA 4I84A 1IB4A 3EQOA 2O17A 3ZPPA 4URRA 1JRGA 1KCCA 1H80A 4U49A 1O8MA 4Z05A 2VJJA 4XORA 2VBKA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4MR0 A;  4XQF A;  2VJI A;  2O0W A;  2X6Y A;  1HG8 A;  2O1D A;  3FY3 A;  1O8E A;  4OJP A;  4XON A;  1AIR A;  4YEJ A;  4XM3 A;  3VST A;  2Z8G A;  4YZ0 A;  1QJV A;  5AMV A;  2INV A;  4OJ5 A;  4W8S A;  1DBG A;  4W8Q A;  2X6X A;  3VSV A;  4YZA A;  3VMW A;  1KCD A;  1OGM X;  1K5C A;  2NTB A;  4OJL A;  1OGO X;  4XOP A;  1XG2 A;  1O8I A;  1O8J A;  3KRG A;  3B90 A;  1BHE A;  3VSU A;  1O8K A;  4XLA A;  4W8R A;  4XLF A;  4MXN A;  4PMH A;  4OZZ A;  4Z06 A;  4XLC A;  1O8G A;  1IA5 A;  4XLE A;  3B4N A;  3GQ8 A;  3T9G A;  2O0V A;  2EWE A;  4OJO A;  3GRH A;  4XN3 A;  2VBM A;  4XNF A;  4OZY A;  3VMV A;  1CZF A;  2NSP A;  1QCX A;  1RU4 A;  2NT9 A;  1GQ8 A;  1X0C A;  4YZQ A;  1PE9 A;  1O8D A;  2NST A;  2VBE A;  2BSP A;  2PEC A;  1EE6 A;  4XL9 A;  2QY1 A;  5C1E A;  2X6W A;  4XN0 A;  2INU A;  3UW0 A;  4Z03 A;  1OOC A;  2QXZ A;  1WMR A;  4HWV A;  1RMG A;  3EQN A;  4XMY A;  4YZX A;  3LMW A;  1O8L A;  4XOT A;  4AVZ A;  5C1C A;  2QX3 A;  1PLU A;  1RWR A;  1KTW A;  4XKV A;  2O04 A;  2X3H A;  4C2L A;  4YEL A;  1JTA A;  1DBO A;  2UVF A;  2X85 A;  4XLH A;  2ODL A;  2IQ7 A;  1BN8 A;  4U4B A;  3WWG A;  3GQ7 A;  3JUR A;  3SUC A;  4NK8 A;  4XKW A;  1OFL A;  4EW9 A;  1PXZ A;  3GQ9 A;  2NTP A;  4OJ6 A;  2NTQ A;  3GQA A;  1O8F A;  1OFM A;  2NT6 A;  2NZM A;  2UVE A;  4XR6 A;  4W8T A;  4NK6 A;  1O8H A;  1VBL A;  1IDJ A;  3ZSC A;  1IDK A;  1O88 A;  2PYH A;  3B8Y A;  1NHC A;  2PYG A;  4I84 A;  1IB4 A;  3EQO A;  2O17 A;  3ZPP A;  4URR A;  1JRG A;  1KCC A;  1H80 A;  4U49 A;  1O8M A;  4Z05 A;  2VJJ A;  4XOR A;  2VBK A; 
#chains in the Genus database with same CATH topology
 4MR0 A;  4XQF A;  2VJI A;  2O0W A;  2X6Y A;  1HG8 A;  2O1D A;  3FY3 A;  3N6Z A;  1O8E A;  3SY2 A;  4OJP A;  4XON A;  1HF2 A;  1AIR A;  4KH3 A;  4XM3 A;  4YEJ A;  3VST A;  2Z8G A;  4YZ0 A;  1QJV A;  2XTX A;  1K8F A;  5AMV A;  2INV A;  4OJ5 A;  4W8S A;  3SZE A;  2W7Z A;  3DU1 X;  1DBG A;  4W8Q A;  3TH0 A;  2X6X A;  3VSV A;  4YZA A;  3VMW A;  1KCD A;  1OGM X;  1K5C A;  2BX6 A;  2NTB A;  3PET A;  4OJL A;  1OGO X;  1QQ1 A;  4XOP A;  1XG2 A;  2V5I A;  1O8I A;  1O8J A;  3KRG A;  4OM9 A;  3B90 A;  2J8I A;  1KQ5 A;  3SYJ A;  1BHE A;  1TYW A;  3VSU A;  1O8K A;  4XLA A;  4W8R A;  4XLF A;  4MXN A;  5JMC B;  3NAW A;  4PMH A;  4OZZ A;  2BM7 A;  2XTW A;  4XLC A;  4Z06 A;  1O8G A;  1IA5 A;  3JX8 A;  3B4N A;  4XLE A;  3H09 A;  3GQ8 A;  3T9G A;  3BH7 B;  2O0V A;  2EWE A;  4OJO A;  3GRH A;  4YEI A;  4XN3 A;  4OPW A;  2VBM A;  3LYC A;  4XNF A;  4OZY A;  3VMV A;  1CZF A;  4JRA C;  2NSP A;  3SQV A;  1QCX A;  3RIQ A;  1RU4 A;  2NT9 A;  1GQ8 A;  1X0C A;  4YZQ A;  1PE9 A;  3NB2 A;  1O8D A;  2NST A;  2B0R A;  2VBE A;  5JLV C;  2VFM A;  2BSP A;  2PEC A;  1EE6 A;  2VFQ A;  4XL9 A;  2QY1 A;  5C1E A;  2XTY A;  2X6W A;  4XN0 A;  2INU A;  3UW0 A;  4Z03 A;  1OOC A;  3ML3 A;  2QZA A;  2QXZ A;  3BH6 B;  1WMR A;  4HWV A;  1DAB A;  1RMG A;  3EQN A;  2VFP A;  4XMY A;  4YZX A;  2XT2 A;  3LMW A;  1TYV A;  3PSZ A;  1QA3 A;  1O8L A;  4XOT A;  4AVZ A;  5C1C A;  2F3L A;  2QX3 A;  2BM6 A;  2G0Y A;  1PLU A;  1RWR A;  2VFO A;  3AK5 A;  1KTW A;  1QA2 A;  4XKV A;  2XT4 A;  2O04 A;  2X3H A;  4C2L A;  4YEL A;  1JTA A;  1DBO A;  2UVF A;  2X85 A;  2XC1 A;  1QRB A;  4XLH A;  2ODL A;  1WXR A;  4YC5 A;  2IQ7 A;  4YDT A;  1BN8 A;  1EZG A;  4U4B A;  4YCQ A;  3WWG A;  3GQ7 A;  3JUR A;  3N90 A;  3SUC A;  4NK8 A;  1TYU A;  3LJY A;  4XKW A;  1OFL A;  1TYX A;  2VFN A;  1PXZ A;  1QRC A;  3GQ9 A;  2NTP A;  4EW9 A;  4OJ6 A;  1EA0 A;  2NTQ A;  3GQA A;  1O8F A;  5DNS A;  1OFM A;  1LM1 A;  2NT6 A;  1LLZ A;  2NZM A;  2UVE A;  4XR6 A;  4W8T A;  4NK6 A;  1O8H A;  1VBL A;  2J8K A;  1IDJ A;  1K4Z A;  3ZSC A;  1IDK A;  1O88 A;  2PYH A;  3B8Y A;  3PSS A;  4V02 C;  1NHC A;  2PYG A;  2QYU A;  4I84 A;  1IB4 A;  3EQO A;  2O17 A;  3ZPP A;  4URR A;  1JRG A;  1TSP A;  1OFE A;  1QA1 A;  1KCC A;  2IOU G;  2BM5 A;  1H80 A;  4YFO A;  2BM4 A;  3P4G A;  4U49 A;  1L1I A;  1LLW A;  1OFD A;  1O8M A;  4Z05 A;  2VJJ A;  2YUH A;  1CLW A;  4XOR A;  2O6W A;  2VBK A; 
#chains in the Genus database with same CATH homology
 4MR0 A;  4XQF A;  2VJI A;  2O0W A;  2X6Y A;  1HG8 A;  2O1D A;  3FY3 A;  1O8E A;  4OJP A;  4XON A;  1AIR A;  4YEJ A;  4XM3 A;  3VST A;  2Z8G A;  4YZ0 A;  1QJV A;  5AMV A;  2INV A;  4OJ5 A;  4W8S A;  1DBG A;  4W8Q A;  2X6X A;  3VSV A;  4YZA A;  3VMW A;  1KCD A;  1OGM X;  1K5C A;  2NTB A;  4OJL A;  1OGO X;  4XOP A;  1XG2 A;  1O8I A;  1O8J A;  3KRG A;  3B90 A;  1BHE A;  3VSU A;  1O8K A;  4XLA A;  4W8R A;  4XLF A;  4MXN A;  4PMH A;  4OZZ A;  4Z06 A;  4XLC A;  1O8G A;  1IA5 A;  4XLE A;  3B4N A;  3GQ8 A;  3T9G A;  2O0V A;  2EWE A;  4OJO A;  3GRH A;  4XN3 A;  2VBM A;  4XNF A;  4OZY A;  3VMV A;  1CZF A;  2NSP A;  1QCX A;  1RU4 A;  2NT9 A;  1GQ8 A;  1X0C A;  4YZQ A;  1PE9 A;  1O8D A;  2NST A;  2VBE A;  2BSP A;  2PEC A;  1EE6 A;  4XL9 A;  2QY1 A;  5C1E A;  2X6W A;  4XN0 A;  2INU A;  3UW0 A;  4Z03 A;  1OOC A;  2QXZ A;  1WMR A;  4HWV A;  1RMG A;  3EQN A;  4XMY A;  4YZX A;  3LMW A;  1O8L A;  4XOT A;  4AVZ A;  5C1C A;  2QX3 A;  1PLU A;  1RWR A;  1KTW A;  4XKV A;  2O04 A;  2X3H A;  4C2L A;  4YEL A;  1JTA A;  1DBO A;  2UVF A;  2X85 A;  4XLH A;  2ODL A;  2IQ7 A;  1BN8 A;  4U4B A;  3WWG A;  3GQ7 A;  3JUR A;  3SUC A;  4NK8 A;  4XKW A;  1OFL A;  4EW9 A;  1PXZ A;  3GQ9 A;  2NTP A;  4OJ6 A;  2NTQ A;  3GQA A;  1O8F A;  1OFM A;  2NT6 A;  2NZM A;  2UVE A;  4XR6 A;  4W8T A;  4NK6 A;  1O8H A;  1VBL A;  1IDJ A;  3ZSC A;  1IDK A;  1O88 A;  2PYH A;  3B8Y A;  1NHC A;  2PYG A;  4I84 A;  1IB4 A;  3EQO A;  2O17 A;  3ZPP A;  4URR A;  1JRG A;  1KCC A;  1H80 A;  4U49 A;  1O8M A;  4Z05 A;  2VJJ A;  4XOR A;  2VBK A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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