1JRGA

Crystal structure of the r3 form of pectate lyase a, erwinia chrysanthemi
Total Genus 128
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
128
sequence length
361
structure length
354
Chain Sequence
b'AELVSDKALESAPTVGWASQNGFTTGGAAATSDNIYIVTNISEFTSALSAGAEAKIIQIKGTIDISGGTPYTDFADQKARSQINIPANTTVIGLGTDAKFINGSLIIDGTDGTNNVIIRNVYIQTPIDVEPHYEKGDGWNAEWDAMNITNGAHHVWIDHVTISDGNFTDDMYTTKDGETYVQHDGALDIKRGSDYVTISNSLIDQHDKTMLIGHDKGKLHVTLFNNVFNRVTERAPRVRYGSIHSFNNVFKGDAKDPVYRYQYSFGIGTSGSVLSEGNSFTIANLSASKACKVVKKFNGSIFSDNGSVLNGSAVDLSGCGFSAYTSKIPYIYDVQPMTTELAQSITDNAGSGKL'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords Pectate lyase
publication title Structure of pectate lyase A: comparison to other isoforms.
pubmed doi rcsb
source organism Erwinia chrysanthemi
molecule tags Lyase
total genus 128
structure length 354
sequence length 361
chains with identical sequence B
ec nomenclature ec 4.2.2.2: Pectate lyase.
pdb deposition date 2001-08-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00544 Pec_lyase_C Pectate lyase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.10 Mainly Beta 3 Solenoid Pectate Lyase C-like Single-stranded right-handed beta-helix, Pectin lyase-like 1jrgA00
2O1DA 1O88A 4YZAA 4XONA 5AMVA 4U49A 4XORA 1BHEA 1O8DA 2UVEA 4MR0A 2NT9A 5C1CA 1RU4A 1KCDA 4NK8A 4W8SA 2Z8GA 1OGMX 4XOTA 1WMRA 3GQ8A 1OGOX 2NTQA 3B90A 4XN0A 1AIRA 3VMWA 2PYGA 1IA5A 4EW9A 1OOCA 2IQ7A 2QXZA 4OZZA 3VSUA 3T9GA 3KRGA 2INVA 1XG2A 4XMYA 1OFMA 1PLUA 4I84A 4U4BA 3ZSCA 1KCCA 2X6XA 1O8HA 3WWGA 1NHCA 3SUCA 4OJ5A 1O8MA 4YELA 4Z06A 4OZYA 1HG8A 4C2LA 4YZQA 1K5CA 2BSPA 2INUA 2X85A 1O8EA 2NSPA 2ODLA 4XQFA 1QCXA 3GRHA 2X6YA 2VBEA 4OJLA 1KTWA 1JRGA 2NT6A 2NZMA 4XL9A 4XLHA 1DBOA 3EQOA 4XKWA 1H80A 1PXZA 3GQ9A 3FY3A 1QJVA 3GQ7A 3VMVA 3B8YA 3VSVA 4HWVA 1PE9A 1X0CA 1IDKA 1O8FA 2X6WA 3GQAA 3LMWA 2PYHA 2O04A 1O8LA 4XM3A 4AVZA 1IDJA 1GQ8A 1VBLA 4MXNA 2VJJA 1O8IA 2EWEA 4PMHA 2PECA 4OJOA 2O17A 2O0VA 2UVFA 4URRA 4XR6A 4XLAA 1O8JA 1CZFA 2QX3A 4XNFA 4XN3A 1RMGA 2X3HA 4Z03A 4Z05A 2NTBA 2VJIA 4XLEA 1RWRA 3VSTA 2NSTA 3B4NA 4YEJA 2VBKA 4W8QA 2QY1A 4OJPA 4YZ0A 1O8KA 1EE6A 3ZPPA 3EQNA 4XLCA 1IB4A 3UW0A 2VBMA 4W8TA 1O8GA 5C1EA 4XKVA 4NK6A 1OFLA 4OJ6A 4XLFA 2NTPA 4YZXA 1DBGA 1BN8A 3JURA 2O0WA 4W8RA 4XOPA 1JTAA
chains in the Genus database with same CATH superfamily
1L1IA 2O1DA 1DABA 1O88A 4YZAA 4XONA 1TYXA 2J8KA 5AMVA 4U49A 2VFNA 4XORA 2VFQA 3H09A 1BHEA 1K8FA 1O8DA 2VFOA 2UVEA 3JX8A 4MR0A 2B0RA 2NT9A 3AK5A 5C1CA 1RU4A 1KCDA 4NK8A 4W8SA 2QYUA 2Z8GA 2XTWA 1OGMX 4XOTA 1WMRA 2O6WA 3GQ8A 1OGOX 1TYVA 3SZEA 2W7ZA 2NTQA 2V5IA 3B90A 5DNSA 4XN0A 1QA1A 1AIRA 2XT4A 3VMWA 1KQ5A 2PYGA 1HF2A 4EW9A 1OOCA 2IQ7A 1IA5A 2QXZA 4OZZA 3VSUA 3T9GA 1WXRA 3KRGA 2BM7A 3PSSA 2INVA 1XG2A 4XMYA 1OFMA 1PLUA 4I84A 4U4BA 3ZSCA 1KCCA 3LYCA 2X6XA 1O8HA 3WWGA 1NHCA 3SUCA 4JRAC 4OJ5A 1O8MA 4V02C 4YELA 2BX6A 4Z06A 4OZYA 1HG8A 4KH3A 1CLWA 4C2LA 1TYUA 4YZQA 1K5CA 2BSPA 2INUA 2X85A 1O8EA 2NSPA 2ODLA 4XQFA 1QCXA 3GRHA 4YEIA 2X6YA 2VBEA 4OJLA 1KTWA 3NAWA 1JRGA 2NT6A 2NZMA 3BH6B 1QA2A 4YDTA 4XL9A 3SY2A 4XLHA 5JMCB 1DBOA 1EZGA 3EQOA 3SQVA 4XKWA 4Z05A 3LJYA 2BM4A 1H80A 1PXZA 3GQ9A 3VSTA 3FY3A 1OFDA 1QJVA 1QRCA 3GQ7A 3VMVA 3B8YA 3VSVA 3RIQA 3SYJA 4HWVA 3TH0A 3PSZA 2YUHA 1EA0A 1PE9A 1X0CA 1IDKA 1O8FA 2X6WA 3GQAA 3LMWA 4YFOA 2PYHA 2O04A 1O8LA 3BH7B 4XM3A 4AVZA 1IDJA 1GQ8A 1VBLA 2VFPA 4MXNA 2VJJA 5JLVC 1QRBA 1O8IA 2EWEA 4PMHA 2PECA 4OJOA 1QQ1A 3N6ZA 2O17A 2O0VA 3P4GA 2UVFA 4URRA 4XR6A 4XLAA 2XC1A 4YC5A 2F3LA 1O8JA 1CZFA 2QX3A 4XNFA 4XN3A 1RMGA 2X3HA 1OFEA 4Z03A 2NTBA 2VJIA 1LLZA 1RWRA 2BM5A 2XTYA 2VFMA 2XT2A 4XLEA 4YCQA 1QA3A 2NSTA 3B4NA 2J8IA 4YEJA 1TSPA 3NB2A 2VBKA 4W8QA 1TYWA 2QY1A 1K4ZA 4OJPA 1O8KA 4YZ0A 1EE6A 3DU1X 3N90A 4OPWA 3ZPPA 2QZAA 1LM1A 2BM6A 3EQNA 4XLCA 1LLWA 1IB4A 3UW0A 2VBMA 4W8TA 1O8GA 5C1EA 4XKVA 2G0YA 4NK6A 4OM9A 1OFLA 2XTXA 2IOUG 4OJ6A 4XLFA 2NTPA 4YZXA 1BN8A 1DBGA 3PETA 3JURA 2O0WA 3ML3A 4W8RA 4XOPA 1JTAA
chains in the Genus database with same CATH topology
2O1DA 1O88A 4YZAA 4XONA 5AMVA 4U49A 4XORA 1BHEA 1O8DA 2UVEA 4MR0A 2NT9A 5C1CA 1RU4A 1KCDA 4NK8A 4W8SA 2Z8GA 1OGMX 4XOTA 1WMRA 3GQ8A 1OGOX 2NTQA 3B90A 4XN0A 1AIRA 3VMWA 2PYGA 1IA5A 4EW9A 1OOCA 2IQ7A 2QXZA 4OZZA 3VSUA 3T9GA 3KRGA 2INVA 1XG2A 4XMYA 1OFMA 1PLUA 4I84A 4U4BA 3ZSCA 1KCCA 2X6XA 1O8HA 3WWGA 1NHCA 3SUCA 4OJ5A 1O8MA 4YELA 4Z06A 4OZYA 1HG8A 4C2LA 4YZQA 1K5CA 2BSPA 2INUA 2X85A 1O8EA 2NSPA 2ODLA 4XQFA 1QCXA 3GRHA 2X6YA 2VBEA 4OJLA 1KTWA 1JRGA 2NT6A 2NZMA 4XL9A 4XLHA 1DBOA 3EQOA 4XKWA 1H80A 1PXZA 3GQ9A 3FY3A 1QJVA 3GQ7A 3VMVA 3B8YA 3VSVA 4HWVA 1PE9A 1X0CA 1IDKA 1O8FA 2X6WA 3GQAA 3LMWA 2PYHA 2O04A 1O8LA 4XM3A 4AVZA 1IDJA 1GQ8A 1VBLA 4MXNA 2VJJA 1O8IA 2EWEA 4PMHA 2PECA 4OJOA 2O17A 2O0VA 2UVFA 4URRA 4XR6A 4XLAA 1O8JA 1CZFA 2QX3A 4XNFA 4XN3A 1RMGA 2X3HA 4Z03A 4Z05A 2NTBA 2VJIA 4XLEA 1RWRA 3VSTA 2NSTA 3B4NA 4YEJA 2VBKA 4W8QA 2QY1A 4OJPA 4YZ0A 1O8KA 1EE6A 3ZPPA 3EQNA 4XLCA 1IB4A 3UW0A 2VBMA 4W8TA 1O8GA 5C1EA 4XKVA 4NK6A 1OFLA 4OJ6A 4XLFA 2NTPA 4YZXA 1DBGA 1BN8A 3JURA 2O0WA 4W8RA 4XOPA 1JTAA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2O1D A;  1O88 A;  4YZA A;  4XON A;  5AMV A;  4U49 A;  4XOR A;  1BHE A;  1O8D A;  2UVE A;  4MR0 A;  2NT9 A;  5C1C A;  1RU4 A;  1KCD A;  4NK8 A;  4W8S A;  2Z8G A;  1OGM X;  4XOT A;  1WMR A;  3GQ8 A;  1OGO X;  2NTQ A;  3B90 A;  4XN0 A;  1AIR A;  3VMW A;  2PYG A;  1IA5 A;  4EW9 A;  1OOC A;  2IQ7 A;  2QXZ A;  4OZZ A;  3VSU A;  3T9G A;  3KRG A;  2INV A;  1XG2 A;  4XMY A;  1OFM A;  1PLU A;  4I84 A;  4U4B A;  3ZSC A;  1KCC A;  2X6X A;  1O8H A;  3WWG A;  1NHC A;  3SUC A;  4OJ5 A;  1O8M A;  4YEL A;  4Z06 A;  4OZY A;  1HG8 A;  4C2L A;  4YZQ A;  1K5C A;  2BSP A;  2INU A;  2X85 A;  1O8E A;  2NSP A;  2ODL A;  4XQF A;  1QCX A;  3GRH A;  2X6Y A;  2VBE A;  4OJL A;  1KTW A;  1JRG A;  2NT6 A;  2NZM A;  4XL9 A;  4XLH A;  1DBO A;  3EQO A;  4XKW A;  1H80 A;  1PXZ A;  3GQ9 A;  3FY3 A;  1QJV A;  3GQ7 A;  3VMV A;  3B8Y A;  3VSV A;  4HWV A;  1PE9 A;  1X0C A;  1IDK A;  1O8F A;  2X6W A;  3GQA A;  3LMW A;  2PYH A;  2O04 A;  1O8L A;  4XM3 A;  4AVZ A;  1IDJ A;  1GQ8 A;  1VBL A;  4MXN A;  2VJJ A;  1O8I A;  2EWE A;  4PMH A;  2PEC A;  4OJO A;  2O17 A;  2O0V A;  2UVF A;  4URR A;  4XR6 A;  4XLA A;  1O8J A;  1CZF A;  2QX3 A;  4XNF A;  4XN3 A;  1RMG A;  2X3H A;  4Z03 A;  4Z05 A;  2NTB A;  2VJI A;  4XLE A;  1RWR A;  3VST A;  2NST A;  3B4N A;  4YEJ A;  2VBK A;  4W8Q A;  2QY1 A;  4OJP A;  4YZ0 A;  1O8K A;  1EE6 A;  3ZPP A;  3EQN A;  4XLC A;  1IB4 A;  3UW0 A;  2VBM A;  4W8T A;  1O8G A;  5C1E A;  4XKV A;  4NK6 A;  1OFL A;  4OJ6 A;  4XLF A;  2NTP A;  4YZX A;  1DBG A;  1BN8 A;  3JUR A;  2O0W A;  4W8R A;  4XOP A;  1JTA A; 
#chains in the Genus database with same CATH topology
 1L1I A;  2O1D A;  1DAB A;  1O88 A;  4YZA A;  4XON A;  1TYX A;  2J8K A;  5AMV A;  4U49 A;  2VFN A;  4XOR A;  2VFQ A;  3H09 A;  1BHE A;  1K8F A;  1O8D A;  2VFO A;  2UVE A;  3JX8 A;  4MR0 A;  2B0R A;  2NT9 A;  3AK5 A;  5C1C A;  1RU4 A;  1KCD A;  4NK8 A;  4W8S A;  2QYU A;  2Z8G A;  2XTW A;  1OGM X;  4XOT A;  1WMR A;  2O6W A;  3GQ8 A;  1OGO X;  1TYV A;  3SZE A;  2W7Z A;  2NTQ A;  2V5I A;  3B90 A;  5DNS A;  4XN0 A;  1QA1 A;  1AIR A;  2XT4 A;  3VMW A;  1KQ5 A;  2PYG A;  1HF2 A;  4EW9 A;  1OOC A;  2IQ7 A;  1IA5 A;  2QXZ A;  4OZZ A;  3VSU A;  3T9G A;  1WXR A;  3KRG A;  2BM7 A;  3PSS A;  2INV A;  1XG2 A;  4XMY A;  1OFM A;  1PLU A;  4I84 A;  4U4B A;  3ZSC A;  1KCC A;  3LYC A;  2X6X A;  1O8H A;  3WWG A;  1NHC A;  3SUC A;  4JRA C;  4OJ5 A;  1O8M A;  4V02 C;  4YEL A;  2BX6 A;  4Z06 A;  4OZY A;  1HG8 A;  4KH3 A;  1CLW A;  4C2L A;  1TYU A;  4YZQ A;  1K5C A;  2BSP A;  2INU A;  2X85 A;  1O8E A;  2NSP A;  2ODL A;  4XQF A;  1QCX A;  3GRH A;  4YEI A;  2X6Y A;  2VBE A;  4OJL A;  1KTW A;  3NAW A;  1JRG A;  2NT6 A;  2NZM A;  3BH6 B;  1QA2 A;  4YDT A;  4XL9 A;  3SY2 A;  4XLH A;  5JMC B;  1DBO A;  1EZG A;  3EQO A;  3SQV A;  4XKW A;  4Z05 A;  3LJY A;  2BM4 A;  1H80 A;  1PXZ A;  3GQ9 A;  3VST A;  3FY3 A;  1OFD A;  1QJV A;  1QRC A;  3GQ7 A;  3VMV A;  3B8Y A;  3VSV A;  3RIQ A;  3SYJ A;  4HWV A;  3TH0 A;  3PSZ A;  2YUH A;  1EA0 A;  1PE9 A;  1X0C A;  1IDK A;  1O8F A;  2X6W A;  3GQA A;  3LMW A;  4YFO A;  2PYH A;  2O04 A;  1O8L A;  3BH7 B;  4XM3 A;  4AVZ A;  1IDJ A;  1GQ8 A;  1VBL A;  2VFP A;  4MXN A;  2VJJ A;  5JLV C;  1QRB A;  1O8I A;  2EWE A;  4PMH A;  2PEC A;  4OJO A;  1QQ1 A;  3N6Z A;  2O17 A;  2O0V A;  3P4G A;  2UVF A;  4URR A;  4XR6 A;  4XLA A;  2XC1 A;  4YC5 A;  2F3L A;  1O8J A;  1CZF A;  2QX3 A;  4XNF A;  4XN3 A;  1RMG A;  2X3H A;  1OFE A;  4Z03 A;  2NTB A;  2VJI A;  1LLZ A;  1RWR A;  2BM5 A;  2XTY A;  2VFM A;  2XT2 A;  4XLE A;  4YCQ A;  1QA3 A;  2NST A;  3B4N A;  2J8I A;  4YEJ A;  1TSP A;  3NB2 A;  2VBK A;  4W8Q A;  1TYW A;  2QY1 A;  1K4Z A;  4OJP A;  1O8K A;  4YZ0 A;  1EE6 A;  3DU1 X;  3N90 A;  4OPW A;  3ZPP A;  2QZA A;  1LM1 A;  2BM6 A;  3EQN A;  4XLC A;  1LLW A;  1IB4 A;  3UW0 A;  2VBM A;  4W8T A;  1O8G A;  5C1E A;  4XKV A;  2G0Y A;  4NK6 A;  4OM9 A;  1OFL A;  2XTX A;  2IOU G;  4OJ6 A;  4XLF A;  2NTP A;  4YZX A;  1BN8 A;  1DBG A;  3PET A;  3JUR A;  2O0W A;  3ML3 A;  4W8R A;  4XOP A;  1JTA A; 
#chains in the Genus database with same CATH homology
 2O1D A;  1O88 A;  4YZA A;  4XON A;  5AMV A;  4U49 A;  4XOR A;  1BHE A;  1O8D A;  2UVE A;  4MR0 A;  2NT9 A;  5C1C A;  1RU4 A;  1KCD A;  4NK8 A;  4W8S A;  2Z8G A;  1OGM X;  4XOT A;  1WMR A;  3GQ8 A;  1OGO X;  2NTQ A;  3B90 A;  4XN0 A;  1AIR A;  3VMW A;  2PYG A;  1IA5 A;  4EW9 A;  1OOC A;  2IQ7 A;  2QXZ A;  4OZZ A;  3VSU A;  3T9G A;  3KRG A;  2INV A;  1XG2 A;  4XMY A;  1OFM A;  1PLU A;  4I84 A;  4U4B A;  3ZSC A;  1KCC A;  2X6X A;  1O8H A;  3WWG A;  1NHC A;  3SUC A;  4OJ5 A;  1O8M A;  4YEL A;  4Z06 A;  4OZY A;  1HG8 A;  4C2L A;  4YZQ A;  1K5C A;  2BSP A;  2INU A;  2X85 A;  1O8E A;  2NSP A;  2ODL A;  4XQF A;  1QCX A;  3GRH A;  2X6Y A;  2VBE A;  4OJL A;  1KTW A;  1JRG A;  2NT6 A;  2NZM A;  4XL9 A;  4XLH A;  1DBO A;  3EQO A;  4XKW A;  1H80 A;  1PXZ A;  3GQ9 A;  3FY3 A;  1QJV A;  3GQ7 A;  3VMV A;  3B8Y A;  3VSV A;  4HWV A;  1PE9 A;  1X0C A;  1IDK A;  1O8F A;  2X6W A;  3GQA A;  3LMW A;  2PYH A;  2O04 A;  1O8L A;  4XM3 A;  4AVZ A;  1IDJ A;  1GQ8 A;  1VBL A;  4MXN A;  2VJJ A;  1O8I A;  2EWE A;  4PMH A;  2PEC A;  4OJO A;  2O17 A;  2O0V A;  2UVF A;  4URR A;  4XR6 A;  4XLA A;  1O8J A;  1CZF A;  2QX3 A;  4XNF A;  4XN3 A;  1RMG A;  2X3H A;  4Z03 A;  4Z05 A;  2NTB A;  2VJI A;  4XLE A;  1RWR A;  3VST A;  2NST A;  3B4N A;  4YEJ A;  2VBK A;  4W8Q A;  2QY1 A;  4OJP A;  4YZ0 A;  1O8K A;  1EE6 A;  3ZPP A;  3EQN A;  4XLC A;  1IB4 A;  3UW0 A;  2VBM A;  4W8T A;  1O8G A;  5C1E A;  4XKV A;  4NK6 A;  1OFL A;  4OJ6 A;  4XLF A;  2NTP A;  4YZX A;  1DBG A;  1BN8 A;  3JUR A;  2O0W A;  4W8R A;  4XOP A;  1JTA A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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