1JRGA

Crystal structure of the r3 form of pectate lyase a, erwinia chrysanthemi
Total Genus 128
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
128
sequence length
361
structure length
354
Chain Sequence
AELVSDKALESAPTVGWASQNGFTTGGAAATSDNIYIVTNISEFTSALSAGAEAKIIQIKGTIDISGGTPYTDFADQKARSQINIPANTTVIGLGTDAKFINGSLIIDGTDGTNNVIIRNVYIQTPIDVEPHYEKGDGWNAEWDAMNITNGAHHVWIDHVTISDGNFTDDMYTTKDGETYVQHDGALDIKRGSDYVTISNSLIDQHDKTMLIGHDKGKLHVTLFNNVFNRVTERAPRVRYGSIHSFNNVFKGDAKDPVYRYQYSFGIGTSGSVLSEGNSFTIANLSASKACKVVKKFNGSIFSDNGSVLNGSAVDLSGCGFSAYTSKIPYIYDVQPMTTELAQSITDNAGSGKL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords Pectate lyase
publication title Structure of pectate lyase A: comparison to other isoforms.
pubmed doi rcsb
source organism Erwinia chrysanthemi
molecule tags Lyase
total genus 128
structure length 354
sequence length 361
chains with identical sequence B
ec nomenclature ec 4.2.2.2: Pectate lyase.
pdb deposition date 2001-08-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00544 Pec_lyase_C Pectate lyase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.10 Mainly Beta 3 Solenoid Pectate Lyase C-like Single-stranded right-handed beta-helix, Pectin lyase-like 1jrgA00
4XMYA 4Z03A 4XKVA 4I84A 4XORA 4XLFA 1IA5A 3B8YA 4XOTA 2NTBA 4YZXA 4MR0A 1XG2A 2ODLA 3EQNA 1BN8A 4XLCA 4XOPA 5C1EA 1O8DA 3SUCA 1NHCA 1PXZA 2VJIA 5C1CA 1O8KA 3GRHA 1OFLA 4HWVA 2BSPA 4Z05A 4XLEA 4AVZA 2X85A 1EE6A 1PLUA 3GQ8A 4XQFA 1PE9A 4Z06A 2EWEA 1RU4A 4URRA 4XONA 2PYHA 1O8GA 4XR6A 2VBKA 1AIRA 2NSTA 2INVA 1O8HA 4YZ0A 2O04A 3B4NA 1QJVA 2VBMA 2X6XA 1WMRA 1IDJA 1BHEA 4XLHA 4U4BA 2PYGA 1HG8A 2O0VA 2NSPA 4OZYA 3WWGA 1JRGA 4YEJA 2NTPA 4XM3A 3VMVA 1RMGA 4NK6A 2QXZA 2O1DA 1CZFA 3VSVA 4EW9A 2X3HA 2X6YA 4U49A 1O8IA 1DBOA 3LMWA 4XKWA 4XN0A 4YELA 3VSTA 4W8SA 2NZMA 2QY1A 1O88A 3T9GA 4XLAA 2O0WA 1JTAA 4OJOA 2VJJA 4OZZA 1O8MA 3ZPPA 3EQOA 1O8LA 2NT6A 2UVEA 4OJPA 1K5CA 2UVFA 4XN3A 1KTWA 4NK8A 3B90A 1VBLA 4PMHA 1O8EA 1O8FA 3KRGA 2O17A 5AMVA 1RWRA 1DBGA 2QX3A 3GQ9A 1O8JA 2IQ7A 4W8TA 3GQ7A 4MXNA 4XNFA 2NT9A 3ZSCA 3VSUA 3FY3A 1KCCA 1OFMA 2PECA 2VBEA 4XL9A 3UW0A 2X6WA 1QCXA 2NTQA 3VMWA 1OGMX 4OJ5A 2Z8GA 3JURA 4YZAA 1OGOX 1IB4A 4C2LA 1IDKA 4W8RA 1KCDA 1H80A 1GQ8A 4OJLA 1OOCA 4W8QA 4YZQA 3GQAA 4OJ6A 2INUA 1X0CA
chains in the Genus database with same CATH superfamily
3NAWA 4XMYA 2VFQA 2J8KA 3SQVA 3SY2A 1TYVA 4Z03A 4XKVA 4V02C 4I84A 4XORA 4XLFA 1IA5A 2VFMA 3B8YA 1QRCA 2NTBA 4XOTA 2BM4A 4MR0A 3LJYA 4YZXA 1XG2A 2ODLA 3EQNA 1BN8A 1OFDA 4XLCA 2BM7A 1O8DA 4XOPA 5C1EA 3SUCA 3SZEA 1NHCA 1WXRA 1EA0A 1PXZA 2VJIA 2G0YA 5C1CA 1O8KA 3GRHA 1TYWA 1OFLA 4HWVA 2BSPA 3JX8A 3PSSA 4Z05A 3N90A 4XLEA 4AVZA 2X85A 2VFNA 1EE6A 1PLUA 3GQ8A 4XQFA 1LM1A 1PE9A 4YFOA 4Z06A 1DABA 2EWEA 1RU4A 4URRA 4XONA 2PYHA 2XT4A 1O8GA 4OPWA 4XR6A 2VBKA 1AIRA 2NSTA 2QZAA 2INVA 4XLHA 1QQ1A 1O8HA 4YZ0A 3P4GA 2O04A 3B4NA 1QJVA 5JMCB 2VBMA 2W7ZA 2X6XA 1TYXA 1IDJA 1BHEA 1WMRA 3DU1X 3H09A 2PYGA 4U4BA 1HG8A 5DNSA 2O0VA 2NSPA 4OZYA 4YC5A 3LYCA 1KQ5A 3WWGA 1JRGA 1TSPA 2F3LA 4YEJA 1L1IA 2NTPA 2BM5A 2IOUG 4XM3A 3VMVA 2XTYA 1RMGA 2BX6A 4NK6A 3ML3A 2O1DA 1CZFA 2QXZA 2XC1A 2YUHA 4KH3A 2XT2A 3VSVA 1QA2A 4EW9A 4OM9A 2J8IA 2X3HA 2X6YA 4U49A 2VFPA 1O8IA 1DBOA 3LMWA 4XKWA 3PSZA 4XN0A 4YELA 3NB2A 2NZMA 2QY1A 3BH7B 4W8SA 3VSTA 1O88A 3T9GA 4XLAA 2O0WA 1JTAA 1HF2A 4OJOA 2XTWA 2VJJA 1EZGA 4OZZA 1O8MA 1CLWA 3ZPPA 5JLVC 2O6WA 1O8LA 2NT6A 2UVEA 2XTXA 3EQOA 4OJPA 1K5CA 1TYUA 2UVFA 4XN3A 1KTWA 4NK8A 3B90A 1VBLA 4PMHA 1O8EA 1O8FA 3KRGA 1QRBA 2O17A 5AMVA 1RWRA 3BH6B 1DBGA 1QA3A 2QX3A 3GQ9A 1O8JA 2IQ7A 4W8TA 3GQ7A 4YDTA 4MXNA 1QA1A 4XNFA 2NT9A 3ZSCA 3VSUA 3FY3A 1KCCA 2BM6A 1OFMA 1K8FA 2PECA 2VBEA 3PETA 4XL9A 4YCQA 3UW0A 4YEIA 3TH0A 2X6WA 3SYJA 1QCXA 2NTQA 3VMWA 1OGMX 4OJ5A 2B0RA 2VFOA 2Z8GA 3JURA 4YZAA 1OGOX 1IB4A 1LLWA 4C2LA 1IDKA 3RIQA 4W8RA 1KCDA 1H80A 1GQ8A 3AK5A 1OFEA 1K4ZA 1OOCA 4OJLA 4W8QA 4YZQA 3N6ZA 2QYUA 3GQAA 4OJ6A 2V5IA 2INUA 4JRAC 1X0CA 1LLZA
chains in the Genus database with same CATH topology
4XMYA 4Z03A 4XKVA 4I84A 4XORA 4XLFA 1IA5A 3B8YA 4XOTA 2NTBA 4YZXA 4MR0A 1XG2A 2ODLA 3EQNA 1BN8A 4XLCA 4XOPA 5C1EA 1O8DA 3SUCA 1NHCA 1PXZA 2VJIA 5C1CA 1O8KA 3GRHA 1OFLA 4HWVA 2BSPA 4Z05A 4XLEA 4AVZA 2X85A 1EE6A 1PLUA 3GQ8A 4XQFA 1PE9A 4Z06A 2EWEA 1RU4A 4URRA 4XONA 2PYHA 1O8GA 4XR6A 2VBKA 1AIRA 2NSTA 2INVA 1O8HA 4YZ0A 2O04A 3B4NA 1QJVA 2VBMA 2X6XA 1WMRA 1IDJA 1BHEA 4XLHA 4U4BA 2PYGA 1HG8A 2O0VA 2NSPA 4OZYA 3WWGA 1JRGA 4YEJA 2NTPA 4XM3A 3VMVA 1RMGA 4NK6A 2QXZA 2O1DA 1CZFA 3VSVA 4EW9A 2X3HA 2X6YA 4U49A 1O8IA 1DBOA 3LMWA 4XKWA 4XN0A 4YELA 3VSTA 4W8SA 2NZMA 2QY1A 1O88A 3T9GA 4XLAA 2O0WA 1JTAA 4OJOA 2VJJA 4OZZA 1O8MA 3ZPPA 3EQOA 1O8LA 2NT6A 2UVEA 4OJPA 1K5CA 2UVFA 4XN3A 1KTWA 4NK8A 3B90A 1VBLA 4PMHA 1O8EA 1O8FA 3KRGA 2O17A 5AMVA 1RWRA 1DBGA 2QX3A 3GQ9A 1O8JA 2IQ7A 4W8TA 3GQ7A 4MXNA 4XNFA 2NT9A 3ZSCA 3VSUA 3FY3A 1KCCA 1OFMA 2PECA 2VBEA 4XL9A 3UW0A 2X6WA 1QCXA 2NTQA 3VMWA 1OGMX 4OJ5A 2Z8GA 3JURA 4YZAA 1OGOX 1IB4A 4C2LA 1IDKA 4W8RA 1KCDA 1H80A 1GQ8A 4OJLA 1OOCA 4W8QA 4YZQA 3GQAA 4OJ6A 2INUA 1X0CA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4XMY A;  4Z03 A;  4XKV A;  4I84 A;  4XOR A;  4XLF A;  1IA5 A;  3B8Y A;  4XOT A;  2NTB A;  4YZX A;  4MR0 A;  1XG2 A;  2ODL A;  3EQN A;  1BN8 A;  4XLC A;  4XOP A;  5C1E A;  1O8D A;  3SUC A;  1NHC A;  1PXZ A;  2VJI A;  5C1C A;  1O8K A;  3GRH A;  1OFL A;  4HWV A;  2BSP A;  4Z05 A;  4XLE A;  4AVZ A;  2X85 A;  1EE6 A;  1PLU A;  3GQ8 A;  4XQF A;  1PE9 A;  4Z06 A;  2EWE A;  1RU4 A;  4URR A;  4XON A;  2PYH A;  1O8G A;  4XR6 A;  2VBK A;  1AIR A;  2NST A;  2INV A;  1O8H A;  4YZ0 A;  2O04 A;  3B4N A;  1QJV A;  2VBM A;  2X6X A;  1WMR A;  1IDJ A;  1BHE A;  4XLH A;  4U4B A;  2PYG A;  1HG8 A;  2O0V A;  2NSP A;  4OZY A;  3WWG A;  1JRG A;  4YEJ A;  2NTP A;  4XM3 A;  3VMV A;  1RMG A;  4NK6 A;  2QXZ A;  2O1D A;  1CZF A;  3VSV A;  4EW9 A;  2X3H A;  2X6Y A;  4U49 A;  1O8I A;  1DBO A;  3LMW A;  4XKW A;  4XN0 A;  4YEL A;  3VST A;  4W8S A;  2NZM A;  2QY1 A;  1O88 A;  3T9G A;  4XLA A;  2O0W A;  1JTA A;  4OJO A;  2VJJ A;  4OZZ A;  1O8M A;  3ZPP A;  3EQO A;  1O8L A;  2NT6 A;  2UVE A;  4OJP A;  1K5C A;  2UVF A;  4XN3 A;  1KTW A;  4NK8 A;  3B90 A;  1VBL A;  4PMH A;  1O8E A;  1O8F A;  3KRG A;  2O17 A;  5AMV A;  1RWR A;  1DBG A;  2QX3 A;  3GQ9 A;  1O8J A;  2IQ7 A;  4W8T A;  3GQ7 A;  4MXN A;  4XNF A;  2NT9 A;  3ZSC A;  3VSU A;  3FY3 A;  1KCC A;  1OFM A;  2PEC A;  2VBE A;  4XL9 A;  3UW0 A;  2X6W A;  1QCX A;  2NTQ A;  3VMW A;  1OGM X;  4OJ5 A;  2Z8G A;  3JUR A;  4YZA A;  1OGO X;  1IB4 A;  4C2L A;  1IDK A;  4W8R A;  1KCD A;  1H80 A;  1GQ8 A;  4OJL A;  1OOC A;  4W8Q A;  4YZQ A;  3GQA A;  4OJ6 A;  2INU A;  1X0C A; 
#chains in the Genus database with same CATH topology
 3NAW A;  4XMY A;  2VFQ A;  2J8K A;  3SQV A;  3SY2 A;  1TYV A;  4Z03 A;  4XKV A;  4V02 C;  4I84 A;  4XOR A;  4XLF A;  1IA5 A;  2VFM A;  3B8Y A;  1QRC A;  2NTB A;  4XOT A;  2BM4 A;  4MR0 A;  3LJY A;  4YZX A;  1XG2 A;  2ODL A;  3EQN A;  1BN8 A;  1OFD A;  4XLC A;  2BM7 A;  1O8D A;  4XOP A;  5C1E A;  3SUC A;  3SZE A;  1NHC A;  1WXR A;  1EA0 A;  1PXZ A;  2VJI A;  2G0Y A;  5C1C A;  1O8K A;  3GRH A;  1TYW A;  1OFL A;  4HWV A;  2BSP A;  3JX8 A;  3PSS A;  4Z05 A;  3N90 A;  4XLE A;  4AVZ A;  2X85 A;  2VFN A;  1EE6 A;  1PLU A;  3GQ8 A;  4XQF A;  1LM1 A;  1PE9 A;  4YFO A;  4Z06 A;  1DAB A;  2EWE A;  1RU4 A;  4URR A;  4XON A;  2PYH A;  2XT4 A;  1O8G A;  4OPW A;  4XR6 A;  2VBK A;  1AIR A;  2NST A;  2QZA A;  2INV A;  4XLH A;  1QQ1 A;  1O8H A;  4YZ0 A;  3P4G A;  2O04 A;  3B4N A;  1QJV A;  5JMC B;  2VBM A;  2W7Z A;  2X6X A;  1TYX A;  1IDJ A;  1BHE A;  1WMR A;  3DU1 X;  3H09 A;  2PYG A;  4U4B A;  1HG8 A;  5DNS A;  2O0V A;  2NSP A;  4OZY A;  4YC5 A;  3LYC A;  1KQ5 A;  3WWG A;  1JRG A;  1TSP A;  2F3L A;  4YEJ A;  1L1I A;  2NTP A;  2BM5 A;  2IOU G;  4XM3 A;  3VMV A;  2XTY A;  1RMG A;  2BX6 A;  4NK6 A;  3ML3 A;  2O1D A;  1CZF A;  2QXZ A;  2XC1 A;  2YUH A;  4KH3 A;  2XT2 A;  3VSV A;  1QA2 A;  4EW9 A;  4OM9 A;  2J8I A;  2X3H A;  2X6Y A;  4U49 A;  2VFP A;  1O8I A;  1DBO A;  3LMW A;  4XKW A;  3PSZ A;  4XN0 A;  4YEL A;  3NB2 A;  2NZM A;  2QY1 A;  3BH7 B;  4W8S A;  3VST A;  1O88 A;  3T9G A;  4XLA A;  2O0W A;  1JTA A;  1HF2 A;  4OJO A;  2XTW A;  2VJJ A;  1EZG A;  4OZZ A;  1O8M A;  1CLW A;  3ZPP A;  5JLV C;  2O6W A;  1O8L A;  2NT6 A;  2UVE A;  2XTX A;  3EQO A;  4OJP A;  1K5C A;  1TYU A;  2UVF A;  4XN3 A;  1KTW A;  4NK8 A;  3B90 A;  1VBL A;  4PMH A;  1O8E A;  1O8F A;  3KRG A;  1QRB A;  2O17 A;  5AMV A;  1RWR A;  3BH6 B;  1DBG A;  1QA3 A;  2QX3 A;  3GQ9 A;  1O8J A;  2IQ7 A;  4W8T A;  3GQ7 A;  4YDT A;  4MXN A;  1QA1 A;  4XNF A;  2NT9 A;  3ZSC A;  3VSU A;  3FY3 A;  1KCC A;  2BM6 A;  1OFM A;  1K8F A;  2PEC A;  2VBE A;  3PET A;  4XL9 A;  4YCQ A;  3UW0 A;  4YEI A;  3TH0 A;  2X6W A;  3SYJ A;  1QCX A;  2NTQ A;  3VMW A;  1OGM X;  4OJ5 A;  2B0R A;  2VFO A;  2Z8G A;  3JUR A;  4YZA A;  1OGO X;  1IB4 A;  1LLW A;  4C2L A;  1IDK A;  3RIQ A;  4W8R A;  1KCD A;  1H80 A;  1GQ8 A;  3AK5 A;  1OFE A;  1K4Z A;  1OOC A;  4OJL A;  4W8Q A;  4YZQ A;  3N6Z A;  2QYU A;  3GQA A;  4OJ6 A;  2V5I A;  2INU A;  4JRA C;  1X0C A;  1LLZ A; 
#chains in the Genus database with same CATH homology
 4XMY A;  4Z03 A;  4XKV A;  4I84 A;  4XOR A;  4XLF A;  1IA5 A;  3B8Y A;  4XOT A;  2NTB A;  4YZX A;  4MR0 A;  1XG2 A;  2ODL A;  3EQN A;  1BN8 A;  4XLC A;  4XOP A;  5C1E A;  1O8D A;  3SUC A;  1NHC A;  1PXZ A;  2VJI A;  5C1C A;  1O8K A;  3GRH A;  1OFL A;  4HWV A;  2BSP A;  4Z05 A;  4XLE A;  4AVZ A;  2X85 A;  1EE6 A;  1PLU A;  3GQ8 A;  4XQF A;  1PE9 A;  4Z06 A;  2EWE A;  1RU4 A;  4URR A;  4XON A;  2PYH A;  1O8G A;  4XR6 A;  2VBK A;  1AIR A;  2NST A;  2INV A;  1O8H A;  4YZ0 A;  2O04 A;  3B4N A;  1QJV A;  2VBM A;  2X6X A;  1WMR A;  1IDJ A;  1BHE A;  4XLH A;  4U4B A;  2PYG A;  1HG8 A;  2O0V A;  2NSP A;  4OZY A;  3WWG A;  1JRG A;  4YEJ A;  2NTP A;  4XM3 A;  3VMV A;  1RMG A;  4NK6 A;  2QXZ A;  2O1D A;  1CZF A;  3VSV A;  4EW9 A;  2X3H A;  2X6Y A;  4U49 A;  1O8I A;  1DBO A;  3LMW A;  4XKW A;  4XN0 A;  4YEL A;  3VST A;  4W8S A;  2NZM A;  2QY1 A;  1O88 A;  3T9G A;  4XLA A;  2O0W A;  1JTA A;  4OJO A;  2VJJ A;  4OZZ A;  1O8M A;  3ZPP A;  3EQO A;  1O8L A;  2NT6 A;  2UVE A;  4OJP A;  1K5C A;  2UVF A;  4XN3 A;  1KTW A;  4NK8 A;  3B90 A;  1VBL A;  4PMH A;  1O8E A;  1O8F A;  3KRG A;  2O17 A;  5AMV A;  1RWR A;  1DBG A;  2QX3 A;  3GQ9 A;  1O8J A;  2IQ7 A;  4W8T A;  3GQ7 A;  4MXN A;  4XNF A;  2NT9 A;  3ZSC A;  3VSU A;  3FY3 A;  1KCC A;  1OFM A;  2PEC A;  2VBE A;  4XL9 A;  3UW0 A;  2X6W A;  1QCX A;  2NTQ A;  3VMW A;  1OGM X;  4OJ5 A;  2Z8G A;  3JUR A;  4YZA A;  1OGO X;  1IB4 A;  4C2L A;  1IDK A;  4W8R A;  1KCD A;  1H80 A;  1GQ8 A;  4OJL A;  1OOC A;  4W8Q A;  4YZQ A;  3GQA A;  4OJ6 A;  2INU A;  1X0C A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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