1JTGB

Crystal structure of tem-1 beta-lactamase / beta-lactamase inhibitor protein complex
Total Genus 50
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
50
sequence length
165
structure length
165
Chain Sequence
AGVMTGAKFTQIQFGMTRQQVLDIAGAENCETGGSFGDSIHCRGHAAGDYYAYATFGFTSAAADAKVDSKSQEKLLAPSAPTLTLAKFNQVTVGMTRAQVLATVGQGSCTTWSEYYPAYPSTAGVTLSLSCFDVDGYSSTGFYRGSAHLWFTDGVLQGKRQWDLV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords BETA-LACTAMASE TEM
publication title Crystal structure and kinetic analysis of beta-lactamase inhibitor protein-II in complex with TEM-1 beta-lactamase.
pubmed doi rcsb
source organism Escherichia coli
molecule tags Hydrolase
total genus 50
structure length 165
sequence length 165
chains with identical sequence D
ec nomenclature
pdb deposition date 2001-08-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF07467 BLIP Beta-lactamase inhibitor (BLIP)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1450.10 Alpha Beta 2-Layer Sandwich Beta-lactamase Inhibitory Protein; Chain:B, domain 1 Beta-lactamase Inhibitory Protein; Chain:B, domain 1 1jtgB02
3.30.1450.10 Alpha Beta 2-Layer Sandwich Beta-lactamase Inhibitory Protein; Chain:B, domain 1 Beta-lactamase Inhibitory Protein; Chain:B, domain 1 1jtgB01
3C4OB 2G2WB 2YH9A 2B5RC 2G2UB 5D0OE 1JTGB 3N4IB 3E2KC 1S0WC 1XXMC 2KM7A 3C7VB 2KXXA 5EKQE 2PXGA 5AYWE 3E2LC 3C7UB 5D0QE 3C4PB 4DM5A 3GMUB 3D4EA
chains in the Genus database with same CATH superfamily
3NW8A 3C4OB 4HSIA 2G2WB 2YH9A 2B5RC 2G2UB 3NWDA 4L1RA 5D0OE 1JTGB 3N4IB 3E2KC 1S0WC 1XXMC 2KM7A 3FVCA 2GUMA 3NWFA 3C7VB 2KXXA 5EKQE 2PXGA 5AYWE 3E2LC 3C7UB 5D0QE 3NWAA 3C4PB 4DM5A 3GMUB 3D4EA
chains in the Genus database with same CATH topology
3NW8A 3C4OB 4HSIA 2G2WB 2YH9A 2B5RC 2G2UB 3NWDA 4L1RA 5D0OE 1JTGB 3N4IB 3E2KC 1S0WC 1XXMC 2KM7A 3FVCA 2GUMA 3NWFA 3C7VB 2KXXA 5EKQE 2PXGA 5AYWE 3E2LC 3C7UB 5D0QE 3NWAA 3C4PB 4DM5A 3GMUB 3D4EA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3C4O B;  2G2W B;  2YH9 A;  2B5R C;  2G2U B;  5D0O E;  1JTG B;  3N4I B;  3E2K C;  1S0W C;  1XXM C;  2KM7 A;  3C7V B;  2KXX A;  5EKQ E;  2PXG A;  5AYW E;  3E2L C;  3C7U B;  5D0Q E;  3C4P B;  4DM5 A;  3GMU B;  3D4E A; 
#chains in the Genus database with same CATH topology
 3NW8 A;  3C4O B;  4HSI A;  2G2W B;  2YH9 A;  2B5R C;  2G2U B;  3NWD A;  4L1R A;  5D0O E;  1JTG B;  3N4I B;  3E2K C;  1S0W C;  1XXM C;  2KM7 A;  3FVC A;  2GUM A;  3NWF A;  3C7V B;  2KXX A;  5EKQ E;  2PXG A;  5AYW E;  3E2L C;  3C7U B;  5D0Q E;  3NWA A;  3C4P B;  4DM5 A;  3GMU B;  3D4E A; 
#chains in the Genus database with same CATH homology
 3NW8 A;  3C4O B;  4HSI A;  2G2W B;  2YH9 A;  2B5R C;  2G2U B;  3NWD A;  4L1R A;  5D0O E;  1JTG B;  3N4I B;  3E2K C;  1S0W C;  1XXM C;  2KM7 A;  3FVC A;  2GUM A;  3NWF A;  3C7V B;  2KXX A;  5EKQ E;  2PXG A;  5AYW E;  3E2L C;  3C7U B;  5D0Q E;  3NWA A;  3C4P B;  4DM5 A;  3GMU B;  3D4E A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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