The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
82
|
sequence length |
291
|
structure length |
261
|
Chain Sequence |
GFYIRALFDYDKTKDCGFLSQALSFRFGDVLHVIDAGDEEWWQARRVIGFIPSKRRVERREWSRLKAKDWGVLSYETVTQMEVHYARPIIILGPTKDRANDDLLSEFPDKFGSCVPHTTRRDYHFVSSREKMEKDIQAHKFIEAGQSHLYGTSVQSVREVAEQGKHCILDVSANAVRRLQAAHLHPIAIFIRPRSLENVLEINKRITEEQARKAFDRATKLEQEFTECFSAIVEGDSFEEIYHKVKRVIEDLSGPYIWVPA
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Structural characterization of the intramolecular interaction between the SH3 and guanylate kinase domains of PSD-95.
pubmed doi rcsb |
| molecule keywords |
postsynaptic density protein
|
| source organism |
Rattus norvegicus
|
| molecule tags |
Structural protein
|
| total genus |
82
|
| structure length |
261
|
| sequence length |
291
|
| chains with identical sequence |
B
|
| ec nomenclature | |
| pdb deposition date | 2001-09-07 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF00018 | SH3_1 | SH3 domain |
| A | PF00625 | Guanylate_kin | Guanylate kinase |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Beta | Roll | SH3 type barrels. | SH3 Domains | ||
| Alpha Beta | 2-Layer Sandwich | Guanylate Kinase phosphate binding domain | Guanylate Kinase phosphate binding domain | ||
| Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | P-loop containing nucleotide triphosphate hydrolases |
