1JXTA

Crambin mixed sequence form at 160 k. protein/water substates
Total Genus 18
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
18
sequence length
46
structure length
46
Chain Sequence
TTCCPSIVARSNFNVCRLPGTPEALCATYTGCIIIPGATCPGDYAN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Plant protein
molecule keywords Crambin
publication title On the nature of a glassy state of matter in a hydrated protein: Relation to protein function.
pubmed doi rcsb
total genus 18
structure length 46
sequence length 46
ec nomenclature
pdb deposition date 2001-09-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00321 Thionin Plant thionin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1350.10 Alpha Beta 2-Layer Sandwich Crambin Thionin-like 1jxtA00
2EYBA 1JXYA 1JXWA 1CCNA 1ED0A 1BHPA 1EJGA 1CXRA 2FD9A 1JXTA 1CRNA 3C8PA 1AB1A 2V9BA 1JMNA 1JXUA 2EYAA 2EYDA 3SZSA 1YVAA 1JXXA 1OKHA 3U7TA 1JMPA 1NBLA 2EYCA 3NIRA 2PLHA 1YV8A 1WUWA 1CNRA 1ORLA 1CBNA 1CCMA 3UE7B 2FD7A 4FC1A
chains in the Genus database with same CATH superfamily
2EYBA 1JNBA 1JXYA 1JXWA 1CCNA 1ED0A 1BHPA 1EJGA 1FOUA 1CXRA 2FD9A 1IJGA 1JXTA 1CRNA 3C8PA 1AB1A 2V9BA 1JMNA 1H5WA 1JXUA 2EYAA 2EYDA 3SZSA 1YVAA 1JXXA 1OKHA 3U7TA 1JMPA 1NBLA 2EYCA 3NIRA 2PLHA 1YV8A 1WUWA 1CNRA 1ORLA 1CBNA 1CCMA 3UE7B 2FD7A 4FC1A
chains in the Genus database with same CATH topology
2EYBA 1JXYA 1JXWA 1CCNA 1ED0A 1BHPA 1EJGA 1CXRA 2FD9A 1JXTA 1CRNA 3C8PA 1AB1A 2V9BA 1JMNA 1JXUA 2EYAA 2EYDA 3SZSA 1YVAA 1JXXA 1OKHA 3U7TA 1JMPA 1NBLA 2EYCA 3NIRA 2PLHA 1YV8A 1WUWA 1CNRA 1ORLA 1CBNA 1CCMA 3UE7B 2FD7A 4FC1A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2EYB A;  1JXY A;  1JXW A;  1CCN A;  1ED0 A;  1BHP A;  1EJG A;  1CXR A;  2FD9 A;  1JXT A;  1CRN A;  3C8P A;  1AB1 A;  2V9B A;  1JMN A;  1JXU A;  2EYA A;  2EYD A;  3SZS A;  1YVA A;  1JXX A;  1OKH A;  3U7T A;  1JMP A;  1NBL A;  2EYC A;  3NIR A;  2PLH A;  1YV8 A;  1WUW A;  1CNR A;  1ORL A;  1CBN A;  1CCM A;  3UE7 B;  2FD7 A;  4FC1 A; 
#chains in the Genus database with same CATH topology
 2EYB A;  1JNB A;  1JXY A;  1JXW A;  1CCN A;  1ED0 A;  1BHP A;  1EJG A;  1FOU A;  1CXR A;  2FD9 A;  1IJG A;  1JXT A;  1CRN A;  3C8P A;  1AB1 A;  2V9B A;  1JMN A;  1H5W A;  1JXU A;  2EYA A;  2EYD A;  3SZS A;  1YVA A;  1JXX A;  1OKH A;  3U7T A;  1JMP A;  1NBL A;  2EYC A;  3NIR A;  2PLH A;  1YV8 A;  1WUW A;  1CNR A;  1ORL A;  1CBN A;  1CCM A;  3UE7 B;  2FD7 A;  4FC1 A; 
#chains in the Genus database with same CATH homology
 2EYB A;  1JXY A;  1JXW A;  1CCN A;  1ED0 A;  1BHP A;  1EJG A;  1CXR A;  2FD9 A;  1JXT A;  1CRN A;  3C8P A;  1AB1 A;  2V9B A;  1JMN A;  1JXU A;  2EYA A;  2EYD A;  3SZS A;  1YVA A;  1JXX A;  1OKH A;  3U7T A;  1JMP A;  1NBL A;  2EYC A;  3NIR A;  2PLH A;  1YV8 A;  1WUW A;  1CNR A;  1ORL A;  1CBN A;  1CCM A;  3UE7 B;  2FD7 A;  4FC1 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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