1K20A

Inorganic pyrophosphatase (family ii) from streptococcus gordonii at 1.5 a resolution
Total Genus 118
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
118
sequence length
310
structure length
310
Chain Sequence
SKILVFGHQNPDSDAIGSSYAFAYLAREAYGLDTEAVALGEPNEETAFVLDYFGVAAPRVITSAKAEGAEQVILTDHNEFQQSVADIAEVEVYGVVDHHRVANFETANPLYMRLEPVGSASSIVYRMFKEHSVAVSKEIAGLMLSGLISDTLLLKSPTTHPTDKAIAPELAELAGVNLEEYGLAMLKAGTNLASKSAEELIDIDAKTFELNGNNVRVAQVNTVDIAEVLERQAEIEAAIEKAIADNGYSDFVLMITDIINSNSEILAIGSNMDKVEAAFNFVLENNHAFLAGAVSRKKQVVPQLTESFNA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title The "open" and "closed" structures of the type-C inorganic pyrophosphatases from Bacillus subtilis and Streptococcus gordonii.
pubmed doi rcsb
source organism Streptococcus gordonii
molecule tags Hydrolase
molecule keywords Manganese-dependent inorganic pyrophosphatase
total genus 118
structure length 310
sequence length 310
chains with identical sequence B
ec nomenclature ec 3.6.1.1: Inorganic diphosphatase.
pdb deposition date 2001-09-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01368 DHH DHH family
A PF02833 DHHA2 DHHA2 domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.310.20 Alpha Beta Roll Diaminopimelate Epimerase; Chain A, domain 1 Diaminopimelate Epimerase; Chain A, domain 1 1k20A02
3.90.1640.10 Alpha Beta Alpha-Beta Complex inorganic pyrophosphatase (n-terminal core) inorganic pyrophosphatase (n-terminal core) 1k20A01
1WPMA 4PY9A 2ENXA 2HAWA 2QB6A 2QB8A 1WPNA 2EB0A 4LS9A 2IW4A 1K20A 2QB7A 3W5WA 3DEVA 1K23A 4RPAA 1I74A 1WPPA
chains in the Genus database with same CATH superfamily
2ENXA 4J9WA 5H2YA 2EB0A 2KPTA 4GL6A 2MPBA 5ANPA 2ZXPA 4K8LA 2ZVFA 4IJZA 1T6KA 1U1XA 2GKJA 4LG3A 2YMAA 4JBDA 5H2GA 3PVHA 1U1VA 1IR6A 4J9XA 2ZXOA 4Q2HA 3EDNA 3EJXA 2QB7A 1U0KA 1W62A 2Q9JA 1TM0A 2LT2A 1W61A 3PW9A 1S7JA 1WPMA 4PY9A 4K7GB 2H9FA 5HA4A 3W5WA 3G7KA 1QY9A 3PTJA 4DUNA 2HAWA 4JUUA 2AZPA 5GKXA 3DEVA 4DWZA 4IK0A 4K7XA 1WPNA 4LS9A 5IWEA 4OA3A 4LB0A 2Q9HA 4Q60A 2ZXRA 1K20A 5GL4A 4JD7A 1BWZA 3IGHX 1I74A 1U1WA 1YM5A 2QB8A 4FC5A 1XUBA 2PW0A 1WPPA 5GL2A 2QB6A 1GQZA 3G98A 3EKMA 3ICJA 3FVEA 5M47A 2PVZA 1K23A 3WQZA 4JCIA 1QYAA 2OTNA 2GKEA 1SDJA 2IW4A 5GL3A 1XUAA 4RPAA 2KW7A
chains in the Genus database with same CATH topology
2ENXA 4J9WA 5H2YA 2EB0A 2KPTA 4GL6A 2MPBA 5ANPA 2ZXPA 4K8LA 2ZVFA 4IJZA 1T6KA 1U1XA 2GKJA 4LG3A 2YMAA 4JBDA 5H2GA 3PVHA 1U1VA 1IR6A 4J9XA 2ZXOA 4Q2HA 3EDNA 3EJXA 2QB7A 1U0KA 1W62A 2Q9JA 1TM0A 2LT2A 1W61A 3PW9A 1S7JA 1WPMA 4PY9A 4K7GB 2H9FA 5HA4A 3W5WA 3G7KA 1QY9A 3PTJA 4DUNA 2HAWA 4JUUA 2AZPA 5GKXA 3DEVA 4DWZA 4IK0A 4K7XA 1WPNA 4LS9A 5IWEA 4OA3A 4LB0A 2Q9HA 4Q60A 2ZXRA 1K20A 5GL4A 4JD7A 1BWZA 3IGHX 1I74A 1U1WA 1YM5A 2QB8A 4FC5A 1XUBA 2PW0A 1WPPA 5GL2A 2QB6A 1GQZA 3G98A 3EKMA 3ICJA 3FVEA 5M47A 2PVZA 1K23A 3WQZA 4JCIA 1QYAA 2OTNA 2GKEA 1SDJA 2IW4A 5GL3A 1XUAA 4RPAA 2KW7A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1WPM A;  4PY9 A;  2ENX A;  2HAW A;  2QB6 A;  2QB8 A;  1WPN A;  2EB0 A;  4LS9 A;  2IW4 A;  1K20 A;  2QB7 A;  3W5W A;  3DEV A;  1K23 A;  4RPA A;  1I74 A;  1WPP A; 
#chains in the Genus database with same CATH topology
 2ENX A;  4J9W A;  5H2Y A;  2EB0 A;  2KPT A;  4GL6 A;  2MPB A;  5ANP A;  2ZXP A;  4K8L A;  2ZVF A;  4IJZ A;  1T6K A;  1U1X A;  2GKJ A;  4LG3 A;  2YMA A;  4JBD A;  5H2G A;  3PVH A;  1U1V A;  1IR6 A;  4J9X A;  2ZXO A;  4Q2H A;  3EDN A;  3EJX A;  2QB7 A;  1U0K A;  1W62 A;  2Q9J A;  1TM0 A;  2LT2 A;  1W61 A;  3PW9 A;  1S7J A;  1WPM A;  4PY9 A;  4K7G B;  2H9F A;  5HA4 A;  3W5W A;  3G7K A;  1QY9 A;  3PTJ A;  4DUN A;  2HAW A;  4JUU A;  2AZP A;  5GKX A;  3DEV A;  4DWZ A;  4IK0 A;  4K7X A;  1WPN A;  4LS9 A;  5IWE A;  4OA3 A;  4LB0 A;  2Q9H A;  4Q60 A;  2ZXR A;  1K20 A;  5GL4 A;  4JD7 A;  1BWZ A;  3IGH X;  1I74 A;  1U1W A;  1YM5 A;  2QB8 A;  4FC5 A;  1XUB A;  2PW0 A;  1WPP A;  5GL2 A;  2QB6 A;  1GQZ A;  3G98 A;  3EKM A;  3ICJ A;  3FVE A;  5M47 A;  2PVZ A;  1K23 A;  3WQZ A;  4JCI A;  1QYA A;  2OTN A;  2GKE A;  1SDJ A;  2IW4 A;  5GL3 A;  1XUA A;  4RPA A;  2KW7 A; 
#chains in the Genus database with same CATH homology
 2ENX A;  4J9W A;  5H2Y A;  2EB0 A;  2KPT A;  4GL6 A;  2MPB A;  5ANP A;  2ZXP A;  4K8L A;  2ZVF A;  4IJZ A;  1T6K A;  1U1X A;  2GKJ A;  4LG3 A;  2YMA A;  4JBD A;  5H2G A;  3PVH A;  1U1V A;  1IR6 A;  4J9X A;  2ZXO A;  4Q2H A;  3EDN A;  3EJX A;  2QB7 A;  1U0K A;  1W62 A;  2Q9J A;  1TM0 A;  2LT2 A;  1W61 A;  3PW9 A;  1S7J A;  1WPM A;  4PY9 A;  4K7G B;  2H9F A;  5HA4 A;  3W5W A;  3G7K A;  1QY9 A;  3PTJ A;  4DUN A;  2HAW A;  4JUU A;  2AZP A;  5GKX A;  3DEV A;  4DWZ A;  4IK0 A;  4K7X A;  1WPN A;  4LS9 A;  5IWE A;  4OA3 A;  4LB0 A;  2Q9H A;  4Q60 A;  2ZXR A;  1K20 A;  5GL4 A;  4JD7 A;  1BWZ A;  3IGH X;  1I74 A;  1U1W A;  1YM5 A;  2QB8 A;  4FC5 A;  1XUB A;  2PW0 A;  1WPP A;  5GL2 A;  2QB6 A;  1GQZ A;  3G98 A;  3EKM A;  3ICJ A;  3FVE A;  5M47 A;  2PVZ A;  1K23 A;  3WQZ A;  4JCI A;  1QYA A;  2OTN A;  2GKE A;  1SDJ A;  2IW4 A;  5GL3 A;  1XUA A;  4RPA A;  2KW7 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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