1K20A

Inorganic pyrophosphatase (family ii) from streptococcus gordonii at 1.5 a resolution
Total Genus 118
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
118
sequence length
310
structure length
310
Chain Sequence
b'SKILVFGHQNPDSDAIGSSYAFAYLAREAYGLDTEAVALGEPNEETAFVLDYFGVAAPRVITSAKAEGAEQVILTDHNEFQQSVADIAEVEVYGVVDHHRVANFETANPLYMRLEPVGSASSIVYRMFKEHSVAVSKEIAGLMLSGLISDTLLLKSPTTHPTDKAIAPELAELAGVNLEEYGLAMLKAGTNLASKSAEELIDIDAKTFELNGNNVRVAQVNTVDIAEVLERQAEIEAAIEKAIADNGYSDFVLMITDIINSNSEILAIGSNMDKVEAAFNFVLENNHAFLAGAVSRKKQVVPQLTESFNA'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Manganese-dependent inorganic pyrophosphatase
publication title The "open" and "closed" structures of the type-C inorganic pyrophosphatases from Bacillus subtilis and Streptococcus gordonii.
pubmed doi rcsb
source organism Streptococcus gordonii
molecule tags Hydrolase
total genus 118
structure length 310
sequence length 310
chains with identical sequence B
ec nomenclature ec 3.6.1.1: Inorganic diphosphatase.
pdb deposition date 2001-09-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01368 DHH DHH family
A PF02833 DHHA2 DHHA2 domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.310.20 Alpha Beta Roll Diaminopimelate Epimerase; Chain A, domain 1 Diaminopimelate Epimerase; Chain A, domain 1 1k20A02
3.90.1640.10 Alpha Beta Alpha-Beta Complex inorganic pyrophosphatase (n-terminal core) inorganic pyrophosphatase (n-terminal core) 1k20A01
1K23A 4LS9A 2EB0A 1K20A 4RPAA 1WPMA 4PY9A 2QB6A 1WPNA 2QB8A 1I74A 2ENXA 2IW4A 1WPPA 3DEVA 3W5WA 2HAWA 2QB7A
chains in the Genus database with same CATH superfamily
1TM0A 4DUNA 3EDNA 4Q2HA 1XUBA 2PVZA 2ZXPA 4J9WA 3WQZA 1QY9A 2Q9HA 3G7KA 1YM5A 1K20A 3PW9A 2PW0A 5M47A 4LB0A 5GL4A 4K8LA 1U1WA 2YMAA 2GKEA 1T6KA 1W62A 4IJZA 1GQZA 2AZPA 1WPNA 1XUAA 2H9FA 2GKJA 4IK0A 4J9XA 2ZVFA 5H2YA 1U1VA 1SDJA 2MPBA 3EKMA 1WPPA 5GKXA 1U1XA 2LT2A 4DWZA 3G98A 4RPAA 2QB8A 5GL3A 5GL2A 4LS9A 5IWEA 2IW4A 2OTNA 3PTJA 3FVEA 5H2GA 4FC5A 1S7JA 1W61A 4PY9A 2ENXA 4JD7A 1QYAA 1BWZA 4OA3A 4Q60A 2QB6A 1U0KA 2ZXRA 2QB7A 4GL6A 4JCIA 2ZXOA 4K7GB 4LG3A 5HA4A 1I74A 3W5WA 2HAWA 3ICJA 3DEVA 3PVHA 2Q9JA 1IR6A 2KPTA 4K7XA 3EJXA 2EB0A 3IGHX 1WPMA 5ANPA 2KW7A 4JUUA 1K23A 4JBDA
chains in the Genus database with same CATH topology
1TM0A 4DUNA 3EDNA 4Q2HA 1XUBA 2PVZA 2ZXPA 4J9WA 3WQZA 1QY9A 2Q9HA 3G7KA 1YM5A 1K20A 3PW9A 2PW0A 5M47A 4LB0A 5GL4A 4K8LA 1U1WA 2YMAA 2GKEA 1T6KA 1W62A 4IJZA 1GQZA 2AZPA 1WPNA 1XUAA 2H9FA 2GKJA 4IK0A 4J9XA 2ZVFA 5H2YA 1U1VA 1SDJA 2MPBA 3EKMA 1WPPA 5GKXA 1U1XA 2LT2A 4DWZA 3G98A 4RPAA 2QB8A 5GL3A 5GL2A 4LS9A 5IWEA 2IW4A 2OTNA 3PTJA 3FVEA 5H2GA 4FC5A 1S7JA 1W61A 4PY9A 2ENXA 4JD7A 1QYAA 1BWZA 4OA3A 4Q60A 2QB6A 1U0KA 2ZXRA 2QB7A 4GL6A 4JCIA 2ZXOA 4K7GB 4LG3A 5HA4A 1I74A 3W5WA 2HAWA 3ICJA 3DEVA 3PVHA 2Q9JA 1IR6A 2KPTA 4K7XA 3EJXA 2EB0A 3IGHX 1WPMA 5ANPA 2KW7A 4JUUA 1K23A 4JBDA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1K23 A;  4LS9 A;  2EB0 A;  1K20 A;  4RPA A;  1WPM A;  4PY9 A;  2QB6 A;  1WPN A;  2QB8 A;  1I74 A;  2ENX A;  2IW4 A;  1WPP A;  3DEV A;  3W5W A;  2HAW A;  2QB7 A; 
#chains in the Genus database with same CATH topology
 1TM0 A;  4DUN A;  3EDN A;  4Q2H A;  1XUB A;  2PVZ A;  2ZXP A;  4J9W A;  3WQZ A;  1QY9 A;  2Q9H A;  3G7K A;  1YM5 A;  1K20 A;  3PW9 A;  2PW0 A;  5M47 A;  4LB0 A;  5GL4 A;  4K8L A;  1U1W A;  2YMA A;  2GKE A;  1T6K A;  1W62 A;  4IJZ A;  1GQZ A;  2AZP A;  1WPN A;  1XUA A;  2H9F A;  2GKJ A;  4IK0 A;  4J9X A;  2ZVF A;  5H2Y A;  1U1V A;  1SDJ A;  2MPB A;  3EKM A;  1WPP A;  5GKX A;  1U1X A;  2LT2 A;  4DWZ A;  3G98 A;  4RPA A;  2QB8 A;  5GL3 A;  5GL2 A;  4LS9 A;  5IWE A;  2IW4 A;  2OTN A;  3PTJ A;  3FVE A;  5H2G A;  4FC5 A;  1S7J A;  1W61 A;  4PY9 A;  2ENX A;  4JD7 A;  1QYA A;  1BWZ A;  4OA3 A;  4Q60 A;  2QB6 A;  1U0K A;  2ZXR A;  2QB7 A;  4GL6 A;  4JCI A;  2ZXO A;  4K7G B;  4LG3 A;  5HA4 A;  1I74 A;  3W5W A;  2HAW A;  3ICJ A;  3DEV A;  3PVH A;  2Q9J A;  1IR6 A;  2KPT A;  4K7X A;  3EJX A;  2EB0 A;  3IGH X;  1WPM A;  5ANP A;  2KW7 A;  4JUU A;  1K23 A;  4JBD A; 
#chains in the Genus database with same CATH homology
 1TM0 A;  4DUN A;  3EDN A;  4Q2H A;  1XUB A;  2PVZ A;  2ZXP A;  4J9W A;  3WQZ A;  1QY9 A;  2Q9H A;  3G7K A;  1YM5 A;  1K20 A;  3PW9 A;  2PW0 A;  5M47 A;  4LB0 A;  5GL4 A;  4K8L A;  1U1W A;  2YMA A;  2GKE A;  1T6K A;  1W62 A;  4IJZ A;  1GQZ A;  2AZP A;  1WPN A;  1XUA A;  2H9F A;  2GKJ A;  4IK0 A;  4J9X A;  2ZVF A;  5H2Y A;  1U1V A;  1SDJ A;  2MPB A;  3EKM A;  1WPP A;  5GKX A;  1U1X A;  2LT2 A;  4DWZ A;  3G98 A;  4RPA A;  2QB8 A;  5GL3 A;  5GL2 A;  4LS9 A;  5IWE A;  2IW4 A;  2OTN A;  3PTJ A;  3FVE A;  5H2G A;  4FC5 A;  1S7J A;  1W61 A;  4PY9 A;  2ENX A;  4JD7 A;  1QYA A;  1BWZ A;  4OA3 A;  4Q60 A;  2QB6 A;  1U0K A;  2ZXR A;  2QB7 A;  4GL6 A;  4JCI A;  2ZXO A;  4K7G B;  4LG3 A;  5HA4 A;  1I74 A;  3W5W A;  2HAW A;  3ICJ A;  3DEV A;  3PVH A;  2Q9J A;  1IR6 A;  2KPT A;  4K7X A;  3EJX A;  2EB0 A;  3IGH X;  1WPM A;  5ANP A;  2KW7 A;  4JUU A;  1K23 A;  4JBD A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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