1K20A

Inorganic pyrophosphatase (family ii) from streptococcus gordonii at 1.5 a resolution
Total Genus 118
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
118
sequence length
310
structure length
310
Chain Sequence
SKILVFGHQNPDSDAIGSSYAFAYLAREAYGLDTEAVALGEPNEETAFVLDYFGVAAPRVITSAKAEGAEQVILTDHNEFQQSVADIAEVEVYGVVDHHRVANFETANPLYMRLEPVGSASSIVYRMFKEHSVAVSKEIAGLMLSGLISDTLLLKSPTTHPTDKAIAPELAELAGVNLEEYGLAMLKAGTNLASKSAEELIDIDAKTFELNGNNVRVAQVNTVDIAEVLERQAEIEAAIEKAIADNGYSDFVLMITDIINSNSEILAIGSNMDKVEAAFNFVLENNHAFLAGAVSRKKQVVPQLTESFNA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title The "open" and "closed" structures of the type-C inorganic pyrophosphatases from Bacillus subtilis and Streptococcus gordonii.
pubmed doi rcsb
source organism Streptococcus gordonii
molecule tags Hydrolase
molecule keywords Manganese-dependent inorganic pyrophosphatase
total genus 118
structure length 310
sequence length 310
chains with identical sequence B
ec nomenclature ec 3.6.1.1: Inorganic diphosphatase.
pdb deposition date 2001-09-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01368 DHH DHH family
A PF02833 DHHA2 DHHA2 domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.310.20 Alpha Beta Roll Diaminopimelate Epimerase; Chain A, domain 1 Diaminopimelate Epimerase; Chain A, domain 1 1k20A02
3.90.1640.10 Alpha Beta Alpha-Beta Complex inorganic pyrophosphatase (n-terminal core) inorganic pyrophosphatase (n-terminal core) 1k20A01
1K23A 2EB0A 1WPNA 2QB6A 1WPPA 1WPMA 2QB7A 3DEVA 3W5WA 1I74A 2HAWA 4RPAA 2ENXA 4LS9A 2IW4A 4PY9A 1K20A 2QB8A
chains in the Genus database with same CATH superfamily
5GKXA 1XUAA 4DWZA 1WPMA 1U0KA 4LS9A 1K23A 2QB7A 5ANPA 1IR6A 2GKJA 1K20A 2EB0A 1QYAA 3W5WA 4OA3A 4DUNA 1U1VA 4K7XA 3G98A 4IJZA 4LG3A 2Q9HA 3IGHX 2AZPA 2HAWA 3PW9A 1U1WA 2QB8A 1W61A 2ZVFA 1BWZA 5M47A 4FC5A 2ENXA 3PVHA 1WPNA 4J9XA 5H2GA 2ZXPA 5IWEA 2PVZA 3PTJA 2KW7A 1S7JA 4K8LA 2YMAA 5GL3A 1T6KA 4IK0A 3EJXA 2MPBA 5GL4A 3DEVA 4GL6A 2LT2A 2OTNA 4JCIA 4K7GB 1SDJA 4JBDA 2ZXRA 2H9FA 3ICJA 3WQZA 1QY9A 1GQZA 3EDNA 4J9WA 3G7KA 2Q9JA 1XUBA 5HA4A 5GL2A 2KPTA 1U1XA 1YM5A 2QB6A 2ZXOA 4JD7A 1W62A 2IW4A 5H2YA 4PY9A 4LB0A 1WPPA 2GKEA 2PW0A 4RPAA 3EKMA 3FVEA 1TM0A 4Q2HA 1I74A 4JUUA 4Q60A
chains in the Genus database with same CATH topology
5GKXA 1XUAA 4DWZA 1WPMA 1U0KA 4LS9A 1K23A 2QB7A 5ANPA 1IR6A 2GKJA 1K20A 2EB0A 1QYAA 3W5WA 4OA3A 4DUNA 1U1VA 4K7XA 3G98A 4IJZA 4LG3A 2Q9HA 3IGHX 2AZPA 2HAWA 3PW9A 1U1WA 2QB8A 1W61A 2ZVFA 1BWZA 5M47A 4FC5A 2ENXA 3PVHA 1WPNA 4J9XA 5H2GA 2ZXPA 5IWEA 2PVZA 3PTJA 2KW7A 1S7JA 4K8LA 2YMAA 5GL3A 1T6KA 4IK0A 3EJXA 2MPBA 5GL4A 3DEVA 4GL6A 2LT2A 2OTNA 4JCIA 4K7GB 1SDJA 4JBDA 2ZXRA 2H9FA 3ICJA 3WQZA 1QY9A 1GQZA 3EDNA 4J9WA 3G7KA 2Q9JA 1XUBA 5HA4A 5GL2A 2KPTA 1U1XA 1YM5A 2QB6A 2ZXOA 4JD7A 1W62A 2IW4A 5H2YA 4PY9A 4LB0A 1WPPA 2GKEA 2PW0A 4RPAA 3EKMA 3FVEA 1TM0A 4Q2HA 1I74A 4JUUA 4Q60A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1K23 A;  2EB0 A;  1WPN A;  2QB6 A;  1WPP A;  1WPM A;  2QB7 A;  3DEV A;  3W5W A;  1I74 A;  2HAW A;  4RPA A;  2ENX A;  4LS9 A;  2IW4 A;  4PY9 A;  1K20 A;  2QB8 A; 
#chains in the Genus database with same CATH topology
 5GKX A;  1XUA A;  4DWZ A;  1WPM A;  1U0K A;  4LS9 A;  1K23 A;  2QB7 A;  5ANP A;  1IR6 A;  2GKJ A;  1K20 A;  2EB0 A;  1QYA A;  3W5W A;  4OA3 A;  4DUN A;  1U1V A;  4K7X A;  3G98 A;  4IJZ A;  4LG3 A;  2Q9H A;  3IGH X;  2AZP A;  2HAW A;  3PW9 A;  1U1W A;  2QB8 A;  1W61 A;  2ZVF A;  1BWZ A;  5M47 A;  4FC5 A;  2ENX A;  3PVH A;  1WPN A;  4J9X A;  5H2G A;  2ZXP A;  5IWE A;  2PVZ A;  3PTJ A;  2KW7 A;  1S7J A;  4K8L A;  2YMA A;  5GL3 A;  1T6K A;  4IK0 A;  3EJX A;  2MPB A;  5GL4 A;  3DEV A;  4GL6 A;  2LT2 A;  2OTN A;  4JCI A;  4K7G B;  1SDJ A;  4JBD A;  2ZXR A;  2H9F A;  3ICJ A;  3WQZ A;  1QY9 A;  1GQZ A;  3EDN A;  4J9W A;  3G7K A;  2Q9J A;  1XUB A;  5HA4 A;  5GL2 A;  2KPT A;  1U1X A;  1YM5 A;  2QB6 A;  2ZXO A;  4JD7 A;  1W62 A;  2IW4 A;  5H2Y A;  4PY9 A;  4LB0 A;  1WPP A;  2GKE A;  2PW0 A;  4RPA A;  3EKM A;  3FVE A;  1TM0 A;  4Q2H A;  1I74 A;  4JUU A;  4Q60 A; 
#chains in the Genus database with same CATH homology
 5GKX A;  1XUA A;  4DWZ A;  1WPM A;  1U0K A;  4LS9 A;  1K23 A;  2QB7 A;  5ANP A;  1IR6 A;  2GKJ A;  1K20 A;  2EB0 A;  1QYA A;  3W5W A;  4OA3 A;  4DUN A;  1U1V A;  4K7X A;  3G98 A;  4IJZ A;  4LG3 A;  2Q9H A;  3IGH X;  2AZP A;  2HAW A;  3PW9 A;  1U1W A;  2QB8 A;  1W61 A;  2ZVF A;  1BWZ A;  5M47 A;  4FC5 A;  2ENX A;  3PVH A;  1WPN A;  4J9X A;  5H2G A;  2ZXP A;  5IWE A;  2PVZ A;  3PTJ A;  2KW7 A;  1S7J A;  4K8L A;  2YMA A;  5GL3 A;  1T6K A;  4IK0 A;  3EJX A;  2MPB A;  5GL4 A;  3DEV A;  4GL6 A;  2LT2 A;  2OTN A;  4JCI A;  4K7G B;  1SDJ A;  4JBD A;  2ZXR A;  2H9F A;  3ICJ A;  3WQZ A;  1QY9 A;  1GQZ A;  3EDN A;  4J9W A;  3G7K A;  2Q9J A;  1XUB A;  5HA4 A;  5GL2 A;  2KPT A;  1U1X A;  1YM5 A;  2QB6 A;  2ZXO A;  4JD7 A;  1W62 A;  2IW4 A;  5H2Y A;  4PY9 A;  4LB0 A;  1WPP A;  2GKE A;  2PW0 A;  4RPA A;  3EKM A;  3FVE A;  1TM0 A;  4Q2H A;  1I74 A;  4JUU A;  4Q60 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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