1K30A

Crystal structure analysis of squash (cucurbita moschata) glycerol-3-phosphate (1)-acyltransferase
Total Genus 133
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
133
sequence length
366
structure length
363
Chain Sequence
SHSRKFLDVRSEEELLSCIKKETEAGKLPPNVAAGMEELYQNYRNAVIESGNPKADEIVLSNMTVALDRILLDVEDPFVFSSHHKAIREPFDYYIFGQNYIRPLIDFGNSFVGNLSLFKDIEEKLQQGHNVVLISNHQTEADPAIISLLLEKTNPYIAENTIFVAGDRVLADPLCKPFSIGRNLICVYSKKHMFDIPELTETKRKANTRSLKEMALLLRGGSQLIWIAPSGGRDRPDPSTGEWYPAPFDASSVDNMRRLIQHSDVPGHLFPLALLCHDIMPPPSQVEIEIRVIAFNGAGLSVAPEISFEEIAATHKNPEEVREAYSKALFDSVAMQYNVLKTAISGKQGLGASTADVSLSQPW
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Analysis of the structure, substrate specificity, and mechanism of squash glycerol-3-phosphate (1)-acyltransferase.
pubmed doi rcsb
source organism Cucurbita moschata
molecule tags Transferase
molecule keywords glycerol-3-phosphate acyltransferase
total genus 133
structure length 363
sequence length 366
ec nomenclature ec 2.3.1.15: Glycerol-3-phosphate 1-O-acyltransferase.
pdb deposition date 2001-10-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01553 Acyltransferase Acyltransferase
A PF14829 GPAT_N Glycerol-3-phosphate acyltransferase N-terminal
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1200.50 Mainly Alpha Orthogonal Bundle Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A 1k30A01
3.40.1130.10 Alpha Beta 3-Layer(aba) Sandwich Glycerol-3-phosphate (1)-acyltransferase Glycerol-3-phosphate (1)-acyltransferase 1k30A02
1K30A 1IUQA
chains in the Genus database with same CATH superfamily
2CQ8A 1L0HA 2ERHA 2QNWA 4M0IA 2MVVA 4IPYA 2ROQA 3HYBA 1AUMA 2M8LA 1UNKA 2K0YA 4U0FA 2EIAA 4F37A 2EG5A 1EMVA 2JU2A 2L4BA 2M8NA 1RNIA 1F80D 1HQBA 2FHSC 2EHSA 1Q82Q 4BPGA 2MD9A 2FQ0A 5DCKA 1FR2A 2JGPA 1VQNP 2LL8A 2L22A 2JYLA 1VQ5P 2X2BA 3E2DA 2N6ZA 2FVEA 3G71P 3CC7P 2L0QA 2EHTA 1YITP 3DS4A 2N5IA 2VLOA 2GDXA 2LIWA 2GZFA 2VLNA 1VQ7P 5F2OA 4XFYA 2K0DX 2KGCA 1K8AQ 2KORA 1E0HA 1L0IA 2LF4A 3G28A 2XZ0D 1JJ2O 1NJIQ 1VQ8P 4CA3A 3G1IA 2PEJA 3H47A 2VLQA 2MY5A 4HKGA 2ONTA 2LKIA 2AFDA 5F2KA 5F2NA 5HGOA 1RO0A 2XV6A 3P05A 1IMQA 2BUOA 3G29A 4DG9A 2PEIA 1GPJA 2CWOA 3CCUP 1QRJA 2PENA 2Z44A 3CCLP 3DS1A 5HVCA 1YJWP 3EJEA 2K92A 2WPTA 3LMOA 2LPKA 4IZ6A 2MR8A 2XZ1C 2KGEA 2VSQA 1AYIA 4PWVB 2PNGA 1VQ6P 1RO2A 3H0DA 3RG6C 3G21A 2JU1A 2FQ1A 2GZGA 2M8PA 4GR2A 1M1KQ 1IUQA 2PEKA 4H2XC 4XROA 1MZ8A 1Z6MA 1X3OA 3B5IA 2DGYA 1Q86Q 1VQPP 1UJZA 3GZMA 3EJBA 2MF4A 2KODA 1DNYA 2VLPA 4XFZA 2K2QA 4COPA 1W2BO 3I55P 3CCQP 1CEIA 2K0XA 5CZDB 5HGMA 3CE7A 3CMAP 2N50A 2PEQA 2OARA 2KG6A 2QA4P 1HY8A 1KQSO 1A43A 1ZNVA 2NO8A 1VQOP 4MRTC 3G0VA 3B4QA 1EOQA 3NTEA 1M74A 3MGEA 2KOOA 3CC2P 3H4EA 3CC4P 1S72P 1DV5A 3DS3A 1VQMP 1Q81Q 3CCEP 2KG8A 2Z45A 2KG9A 1KD1Q 2K94A 4QNBA 2KGDA 3DTJA 1YJNP 5BS2A 4NEOA 4H2WC 1BAJA 3CCVP 2PEOA 1YI2P 4BPHA 1K30A 2LTEA 3WBHA 1KC8Q 3GZLA 2PEMA 4U0BA 1K73Q 1YHQP 1ACPA 2GDYA 2P9XA 4H2YC 4QKOA 2GDWA 5KP7B 4R0MA 4COCA 3CCSP 2OTLP 2KOQA 3NY7B 1M6NA 2KGAA 1YIJP 3I56P 2CGQA 5HGNA 3DPHA 3OW2O 1VQLP 5HV8A 4PH1A 3GJNA 4BPFA 2LMLA 4U0CA 2CNRA 1GXHA 5JPAA 2DNWA 3CMEP 1T8KA 2JB0A 4GR6A 2JYGA 4PH0A 2M5RA 2LIUA 4XFXA 1M90Q 5KP8B 1QVGO 1Q7YQ 3G1GA 1VQ9P 1D1DA 2MVUA 1EIAA 3CCMP 2FVAA 4WYMA 4U0AA 2KW2A 3CCJP 2KR5A 2JAZA 2EFJA 2AF8A 1KLPA 2KWLA 2CG5B 1VKUA 1A8OA 2PY8A 4PXHB 2LOLA 1VQ4P 3CD6P 2N98A 1GXGA 2GYKA 3DS2A 3Q20A 2KOPA 2FAEA 2AFEA 7CEIA 2XT1A 2FADA 3CCRP 2MR7A 3DS5A 5EJDA 3EJDA 2JQ4A 5BS1A 2E1MA 4U0EA 2AVAA 1YJ9P 1ZMBA 1BXIA 2Z46A 3M1MA 2JBGA 4XRQA 3G4SP 2N5HA 5EW5E 1VHNA 3HZQA 2XXMA 1VQKP 1IMPA 1N8RQ 3U43A 2BHVA 2OTJP 1NQ4A 3G26A 4U0DA 3GKLC 1AF8A 2KOSA 2FACA 3DS0A 2GZEA 1M6EX 1QVFO 3VRLC 1K9MQ 2N6YA 4UHPB 5KP6B 2L9FA 2QEXP 3CPWO 2GZJA 5HGLA 2K93A 2GZIA 2K5XA 3LRYA 2JO0A 2FQ2A 3CXCO 1E6JP 3RG2A 2L6EA 5I4TG 3G6EP 1OR5A 2FVFA
chains in the Genus database with same CATH topology
3CCJP 2BUOA 3G0VA 3G29A 4M0IA 1EOQA 2EFJA 2PEIA 3NTEA 1M74A 3MGEA 3CC2P 2CWOA 3H4EA 4IPYA 3CCUP 3CC4P 1QRJA 1S72P 3HYBA 1AUMA 2PENA 2Z44A 1A8OA 2M8LA 4U0FA 2PY8A 3DS3A 3CCLP 2EIAA 1VQMP 1Q81Q 3CCEP 2EG5A 3DS1A 1VQ4P 3CD6P 2Z45A 1KD1Q 2M8NA 1RNIA 3DS2A 1YJWP 3Q20A 4QNBA 1Q82Q 3DTJA 5DCKA 2XT1A 1YJNP 3CCRP 5BS2A 1VQNP 3DS5A 1BAJA 3CCVP 2JYLA 2PEOA 1VQ5P 5BS1A 1YI2P 3E2DA 2E1MA 4U0EA 1K30A 3G71P 3WBHA 1YJ9P 1KC8Q 3CC7P 1YITP 2PEMA 1VQ6P 1RO2A 1ZMBA 4U0BA 3H0DA 2Z46A 3DS4A 3M1MA 4XRQA 1K73Q 1YHQP 2P9XA 3G4SP 3RG6C 3G21A 3HZQA 2XXMA 4COCA 1VQKP 2M8PA 3CCSP 2OTLP 1VQ7P 4GR2A 1M1KQ 1IUQA 5F2OA 2PEKA 4XFYA 1M6NA 4XROA 1YIJP 1N8RQ 3I56P 2BHVA 3DPHA 5HGNA 3OW2O 3B5IA 1VQLP 2DGYA 4PH1A 2OTJP 3G26A 1K8AQ 4U0DA 1Q86Q 3DS0A 2LF4A 1VQPP 4U0CA 1M6EX 1QVFO 3G28A 3VRLC 2KODA 5JPAA 1K9MQ 4XFZA 3CMEP 1JJ2O 4COPA 1NJIQ 1VQ8P 2QEXP 3I55P 3CPWO 3CCQP 3G1IA 5HGLA 1W2BO 4GR6A 2JYGA 2PEJA 3H47A 5HGMA 3CMAP 4PH0A 3LRYA 2PEQA 4XFXA 2OARA 2ONTA 2JO0A 1M90Q 2QA4P 3CXCO 1E6JP 1QVGO 5F2KA 1Q7YQ 3G1GA 1A43A 5F2NA 1KQSO 1VQ9P 1D1DA 1EIAA 2L6EA 5HGOA 5I4TG 1RO0A 3CCMP 4WYMA 2XV6A 3G6EP 3P05A 4U0AA 1VQOP
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1K30 A;  1IUQ A; 
#chains in the Genus database with same CATH topology
 2CQ8 A;  1L0H A;  2ERH A;  2QNW A;  4M0I A;  2MVV A;  4IPY A;  2ROQ A;  3HYB A;  1AUM A;  2M8L A;  1UNK A;  2K0Y A;  4U0F A;  2EIA A;  4F37 A;  2EG5 A;  1EMV A;  2JU2 A;  2L4B A;  2M8N A;  1RNI A;  1F80 D;  1HQB A;  2FHS C;  2EHS A;  1Q82 Q;  4BPG A;  2MD9 A;  2FQ0 A;  5DCK A;  1FR2 A;  2JGP A;  1VQN P;  2LL8 A;  2L22 A;  2JYL A;  1VQ5 P;  2X2B A;  3E2D A;  2N6Z A;  2FVE A;  3G71 P;  3CC7 P;  2L0Q A;  2EHT A;  1YIT P;  3DS4 A;  2N5I A;  2VLO A;  2GDX A;  2LIW A;  2GZF A;  2VLN A;  1VQ7 P;  5F2O A;  4XFY A;  2K0D X;  2KGC A;  1K8A Q;  2KOR A;  1E0H A;  1L0I A;  2LF4 A;  3G28 A;  2XZ0 D;  1JJ2 O;  1NJI Q;  1VQ8 P;  4CA3 A;  3G1I A;  2PEJ A;  3H47 A;  2VLQ A;  2MY5 A;  4HKG A;  2ONT A;  2LKI A;  2AFD A;  5F2K A;  5F2N A;  5HGO A;  1RO0 A;  2XV6 A;  3P05 A;  1IMQ A;  2BUO A;  3G29 A;  4DG9 A;  2PEI A;  1GPJ A;  2CWO A;  3CCU P;  1QRJ A;  2PEN A;  2Z44 A;  3CCL P;  3DS1 A;  5HVC A;  1YJW P;  3EJE A;  2K92 A;  2WPT A;  3LMO A;  2LPK A;  4IZ6 A;  2MR8 A;  2XZ1 C;  2KGE A;  2VSQ A;  1AYI A;  4PWV B;  2PNG A;  1VQ6 P;  1RO2 A;  3H0D A;  3RG6 C;  3G21 A;  2JU1 A;  2FQ1 A;  2GZG A;  2M8P A;  4GR2 A;  1M1K Q;  1IUQ A;  2PEK A;  4H2X C;  4XRO A;  1MZ8 A;  1Z6M A;  1X3O A;  3B5I A;  2DGY A;  1Q86 Q;  1VQP P;  1UJZ A;  3GZM A;  3EJB A;  2MF4 A;  2KOD A;  1DNY A;  2VLP A;  4XFZ A;  2K2Q A;  4COP A;  1W2B O;  3I55 P;  3CCQ P;  1CEI A;  2K0X A;  5CZD B;  5HGM A;  3CE7 A;  3CMA P;  2N50 A;  2PEQ A;  2OAR A;  2KG6 A;  2QA4 P;  1HY8 A;  1KQS O;  1A43 A;  1ZNV A;  2NO8 A;  1VQO P;  4MRT C;  3G0V A;  3B4Q A;  1EOQ A;  3NTE A;  1M74 A;  3MGE A;  2KOO A;  3CC2 P;  3H4E A;  3CC4 P;  1S72 P;  1DV5 A;  3DS3 A;  1VQM P;  1Q81 Q;  3CCE P;  2KG8 A;  2Z45 A;  2KG9 A;  1KD1 Q;  2K94 A;  4QNB A;  2KGD A;  3DTJ A;  1YJN P;  5BS2 A;  4NEO A;  4H2W C;  1BAJ A;  3CCV P;  2PEO A;  1YI2 P;  4BPH A;  1K30 A;  2LTE A;  3WBH A;  1KC8 Q;  3GZL A;  2PEM A;  4U0B A;  1K73 Q;  1YHQ P;  1ACP A;  2GDY A;  2P9X A;  4H2Y C;  4QKO A;  2GDW A;  5KP7 B;  4R0M A;  4COC A;  3CCS P;  2OTL P;  2KOQ A;  3NY7 B;  1M6N A;  2KGA A;  1YIJ P;  3I56 P;  2CGQ A;  5HGN A;  3DPH A;  3OW2 O;  1VQL P;  5HV8 A;  4PH1 A;  3GJN A;  4BPF A;  2LML A;  4U0C A;  2CNR A;  1GXH A;  5JPA A;  2DNW A;  3CME P;  1T8K A;  2JB0 A;  4GR6 A;  2JYG A;  4PH0 A;  2M5R A;  2LIU A;  4XFX A;  1M90 Q;  5KP8 B;  1QVG O;  1Q7Y Q;  3G1G A;  1VQ9 P;  1D1D A;  2MVU A;  1EIA A;  3CCM P;  2FVA A;  4WYM A;  4U0A A;  2KW2 A;  3CCJ P;  2KR5 A;  2JAZ A;  2EFJ A;  2AF8 A;  1KLP A;  2KWL A;  2CG5 B;  1VKU A;  1A8O A;  2PY8 A;  4PXH B;  2LOL A;  1VQ4 P;  3CD6 P;  2N98 A;  1GXG A;  2GYK A;  3DS2 A;  3Q20 A;  2KOP A;  2FAE A;  2AFE A;  7CEI A;  2XT1 A;  2FAD A;  3CCR P;  2MR7 A;  3DS5 A;  5EJD A;  3EJD A;  2JQ4 A;  5BS1 A;  2E1M A;  4U0E A;  2AVA A;  1YJ9 P;  1ZMB A;  1BXI A;  2Z46 A;  3M1M A;  2JBG A;  4XRQ A;  3G4S P;  2N5H A;  5EW5 E;  1VHN A;  3HZQ A;  2XXM A;  1VQK P;  1IMP A;  1N8R Q;  3U43 A;  2BHV A;  2OTJ P;  1NQ4 A;  3G26 A;  4U0D A;  3GKL C;  1AF8 A;  2KOS A;  2FAC A;  3DS0 A;  2GZE A;  1M6E X;  1QVF O;  3VRL C;  1K9M Q;  2N6Y A;  4UHP B;  5KP6 B;  2L9F A;  2QEX P;  3CPW O;  2GZJ A;  5HGL A;  2K93 A;  2GZI A;  2K5X A;  3LRY A;  2JO0 A;  2FQ2 A;  3CXC O;  1E6J P;  3RG2 A;  2L6E A;  5I4T G;  3G6E P;  1OR5 A;  2FVF A; 
#chains in the Genus database with same CATH homology
 3CCJ P;  2BUO A;  3G0V A;  3G29 A;  4M0I A;  1EOQ A;  2EFJ A;  2PEI A;  3NTE A;  1M74 A;  3MGE A;  3CC2 P;  2CWO A;  3H4E A;  4IPY A;  3CCU P;  3CC4 P;  1QRJ A;  1S72 P;  3HYB A;  1AUM A;  2PEN A;  2Z44 A;  1A8O A;  2M8L A;  4U0F A;  2PY8 A;  3DS3 A;  3CCL P;  2EIA A;  1VQM P;  1Q81 Q;  3CCE P;  2EG5 A;  3DS1 A;  1VQ4 P;  3CD6 P;  2Z45 A;  1KD1 Q;  2M8N A;  1RNI A;  3DS2 A;  1YJW P;  3Q20 A;  4QNB A;  1Q82 Q;  3DTJ A;  5DCK A;  2XT1 A;  1YJN P;  3CCR P;  5BS2 A;  1VQN P;  3DS5 A;  1BAJ A;  3CCV P;  2JYL A;  2PEO A;  1VQ5 P;  5BS1 A;  1YI2 P;  3E2D A;  2E1M A;  4U0E A;  1K30 A;  3G71 P;  3WBH A;  1YJ9 P;  1KC8 Q;  3CC7 P;  1YIT P;  2PEM A;  1VQ6 P;  1RO2 A;  1ZMB A;  4U0B A;  3H0D A;  2Z46 A;  3DS4 A;  3M1M A;  4XRQ A;  1K73 Q;  1YHQ P;  2P9X A;  3G4S P;  3RG6 C;  3G21 A;  3HZQ A;  2XXM A;  4COC A;  1VQK P;  2M8P A;  3CCS P;  2OTL P;  1VQ7 P;  4GR2 A;  1M1K Q;  1IUQ A;  5F2O A;  2PEK A;  4XFY A;  1M6N A;  4XRO A;  1YIJ P;  1N8R Q;  3I56 P;  2BHV A;  3DPH A;  5HGN A;  3OW2 O;  3B5I A;  1VQL P;  2DGY A;  4PH1 A;  2OTJ P;  3G26 A;  1K8A Q;  4U0D A;  1Q86 Q;  3DS0 A;  2LF4 A;  1VQP P;  4U0C A;  1M6E X;  1QVF O;  3G28 A;  3VRL C;  2KOD A;  5JPA A;  1K9M Q;  4XFZ A;  3CME P;  1JJ2 O;  4COP A;  1NJI Q;  1VQ8 P;  2QEX P;  3I55 P;  3CPW O;  3CCQ P;  3G1I A;  5HGL A;  1W2B O;  4GR6 A;  2JYG A;  2PEJ A;  3H47 A;  5HGM A;  3CMA P;  4PH0 A;  3LRY A;  2PEQ A;  4XFX A;  2OAR A;  2ONT A;  2JO0 A;  1M90 Q;  2QA4 P;  3CXC O;  1E6J P;  1QVG O;  5F2K A;  1Q7Y Q;  3G1G A;  1A43 A;  5F2N A;  1KQS O;  1VQ9 P;  1D1D A;  1EIA A;  2L6E A;  5HGO A;  5I4T G;  1RO0 A;  3CCM P;  4WYM A;  2XV6 A;  3G6E P;  3P05 A;  4U0A A;  1VQO P; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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