1K30A

Crystal structure analysis of squash (cucurbita moschata) glycerol-3-phosphate (1)-acyltransferase
Total Genus 133
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
133
sequence length
366
structure length
363
Chain Sequence
SHSRKFLDVRSEEELLSCIKKETEAGKLPPNVAAGMEELYQNYRNAVIESGNPKADEIVLSNMTVALDRILLDVEDPFVFSSHHKAIREPFDYYIFGQNYIRPLIDFGNSFVGNLSLFKDIEEKLQQGHNVVLISNHQTEADPAIISLLLEKTNPYIAENTIFVAGDRVLADPLCKPFSIGRNLICVYSKKHMFDIPELTETKRKANTRSLKEMALLLRGGSQLIWIAPSGGRDRPDPSTGEWYPAPFDASSVDNMRRLIQHSDVPGHLFPLALLCHDIMPPPSQVEIEIRVIAFNGAGLSVAPEISFEEIAATHKNPEEVREAYSKALFDSVAMQYNVLKTAISGKQGLGASTADVSLSQPW
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Analysis of the structure, substrate specificity, and mechanism of squash glycerol-3-phosphate (1)-acyltransferase.
pubmed doi rcsb
source organism Cucurbita moschata
molecule tags Transferase
molecule keywords glycerol-3-phosphate acyltransferase
total genus 133
structure length 363
sequence length 366
ec nomenclature ec 2.3.1.15: Glycerol-3-phosphate 1-O-acyltransferase.
pdb deposition date 2001-10-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01553 Acyltransferase Acyltransferase
A PF14829 GPAT_N Glycerol-3-phosphate acyltransferase N-terminal
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.1200.50 Mainly Alpha Orthogonal Bundle Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A 1k30A01
3.40.1130.10 Alpha Beta 3-Layer(aba) Sandwich Glycerol-3-phosphate (1)-acyltransferase Glycerol-3-phosphate (1)-acyltransferase 1k30A02
1IUQA 1K30A
chains in the Genus database with same CATH superfamily
2VLNA 2CG5B 2PNGA 2FQ1A 2CNRA 2MY5A 2BHVA 3H0DA 2KORA 2QA4P 1EOQA 3I56P 1VHNA 1HY8A 2MVVA 5HVCA 2FHSC 1F80D 2AFEA 5EW5E 3CCMP 2KOPA 3CD6P 1N8RQ 3DS5A 1VKUA 2MD9A 4GR6A 2L0QA 2PEMA 3LRYA 2MR7A 5HV8A 5KP6B 3CPWO 4U0AA 1KD1Q 3G26A 3H4EA 2K2QA 1DNYA 5KP7B 1KQSO 1EIAA 2N5IA 1VQPP 3CCSP 1IUQA 1EMVA 2KOOA 2PEJA 2KGCA 2KG9A 2JB0A 1YITP 5HGMA 3H47A 2EHSA 2P9XA 2LF4A 1M74A 3EJEA 1VQ9P 3G1IA 1VQNP 4QKOA 2M8LA 3G4SP 1VQLP 5I4TG 3CE7A 2FAEA 1VQ8P 1K8AQ 2X2BA 1BXIA 2JYLA 1E0HA 1S72P 5HGLA 1YJ9P 3B5IA 1DV5A 3CCRP 2XV6A 2KOQA 2XXMA 3GZMA 1JJ2O 4BPGA 4H2XC 3HZQA 1OR5A 3LMOA 5HGOA 2Z45A 1GXHA 3VRLC 1HQBA 2FVAA 4U0FA 3G28A 2GYKA 2WPTA 3Q20A 1YHQP 4COCA 2KGEA 4XFXA 3WBHA 2MF4A 2LIWA 1K9MQ 2K92A 1W2BO 2JU2A 2LIUA 2LOLA 3G1GA 5F2OA 2GZIA 4XFZA 1A8OA 1VQOP 2N98A 1IMQA 1VQ4P 5HGNA 1QRJA 2K0XA 2KGDA 4PH0A 2LMLA 3I55P 3DTJA 2FVEA 3G6EP 2L9FA 2VLOA 4U0BA 3CCQP 2GDXA 2N50A 4R0MA 2L4BA 3CCLP 3NTEA 3DS0A 2GZGA 2XZ0D 2PEKA 3CMAP 4MRTC 2CQ8A 1A43A 4HKGA 1RNIA 4PWVB 2OTLP 2K94A 2K93A 1IMPA 2JO0A 1NJIQ 1UJZA 2LL8A 4XRQA 1L0IA 2M5RA 2CWOA 2XT1A 3GZLA 3EJDA 3P05A 3G29A 4UHPB 3G21A 1GXGA 1VQ6P 1UNKA 4U0EA 2KG8A 2KR5A 1FR2A 4WYMA 1VQ7P 2VLPA 1QVFO 3GKLC 2PEIA 1KC8Q 1ZMBA 2FADA 2ONTA 4XROA 3G71P 1AUMA 3G0VA 3GJNA 1M1KQ 1AF8A 1KLPA 1MZ8A 3CMEP 1ZNVA 1Q81Q 3CCVP 5KP8B 3OW2O 2KWLA 2FQ2A 2XZ1C 5EJDA 1VQKP 2VLQA 3CC4P 2GZFA 4PH1A 5BS1A 1YI2P 2M8NA 1YJWP 2FQ0A 3RG2A 3CCUP 2FVFA 1E6JP 3DS4A 2M8PA 1Z6MA 2OTJP 2NO8A 1X3OA 4H2YC 3CXCO 1Q82Q 3DPHA 3NY7B 2N6YA 2N5HA 4PXHB 2LKIA 4DG9A 2Z44A 2GDWA 2MVUA 5DCKA 1T8KA 1K73Q 2LTEA 2K0DX 2GDYA 3DS2A 1VQMP 1GPJA 5JPAA 4GR2A 2Z46A 2KGAA 2PEOA 1CEIA 2KW2A 2JYGA 4M0IA 2KOSA 2K0YA 4BPHA 2CGQA 2OARA 2AVAA 2AFDA 3E2DA 1D1DA 4NEOA 2BUOA 5BS2A 4CA3A 2KODA 1L0HA 4F37A 2EFJA 3U43A 3CC2P 4XFYA 3DS3A 2KG6A 2VSQA 4U0DA 3CCJP 4BPFA 4H2WC 2ROQA 1Q7YQ 5F2NA 5CZDB 2FACA 2JQ4A 2E1MA 1M6EX 1YJNP 5F2KA 2QNWA 2K5XA 2ERHA 1M90Q 2GZJA 1M6NA 2DGYA 2N6ZA 3DS1A 2EG5A 2DNWA 2LPKA 1ACPA 2JBGA 2L22A 1QVGO 3MGEA 4IZ6A 1K30A 4COPA 4QNBA 1RO0A 1VQ5P 2L6EA 1RO2A 1Q86Q 3M1MA 2EIAA 2GZEA 3CC7P 3RG6C 1BAJA 2EHTA 2PY8A 3EJBA 3HYBA 1YIJP 4IPYA 2PENA 2JU1A 2AF8A 3CCEP 4U0CA 1AYIA 2QEXP 1NQ4A 3B4QA 2MR8A 2JAZA 2JGPA 2PEQA 7CEIA
chains in the Genus database with same CATH topology
2JYLA 5JPAA 4GR2A 1S72P 5HGLA 2Z46A 2CWOA 1YJ9P 2XT1A 2PEOA 3B5IA 3CCRP 2JYGA 4M0IA 3P05A 3G29A 2XV6A 2XXMA 2OARA 3G21A 1JJ2O 1VQ6P 4U0EA 1VQ7P 4WYMA 3E2DA 1D1DA 3HZQA 5HGOA 2BHVA 3H0DA 2Z45A 2BUOA 3VRLC 1QVFO 5BS2A 2QA4P 4U0FA 3G28A 3Q20A 2PEIA 1KC8Q 1EOQA 1ZMBA 2KODA 1YHQP 3I56P 2ONTA 2EFJA 4COCA 4XFXA 4XROA 3WBHA 3G71P 1AUMA 3CC2P 4XFYA 3G0VA 1M1KQ 1K9MQ 3DS3A 3CCMP 3CMEP 1Q81Q 3CCVP 1W2BO 3CD6P 4U0DA 3CCJP 3OW2O 1N8RQ 3DS5A 3G1GA 1VQKP 4GR6A 1Q7YQ 3CC4P 5F2NA 2PEMA 5F2OA 2E1MA 3LRYA 1M6EX 4XFZA 4PH1A 1YJNP 1A8OA 5F2KA 3CPWO 4U0AA 5BS1A 1VQOP 1KD1Q 3G26A 3H4EA 1YI2P 2M8NA 1M90Q 1YJWP 5HGNA 1QRJA 1VQ4P 1M6NA 2DGYA 1KQSO 1EIAA 3DS1A 2EG5A 4PH0A 3I55P 3DTJA 3CCUP 1E6JP 3G6EP 3DS4A 2M8PA 4U0BA 3CCQP 1QVGO 3MGEA 1VQPP 2OTJP 3CCSP 1IUQA 1K30A 4COPA 4QNBA 1RO0A 1VQ5P 2L6EA 2PEJA 1RO2A 1Q86Q 3CCLP 3NTEA 3CXCO 1Q82Q 3DS0A 3M1MA 2EIAA 1YITP 2PEKA 3DPHA 5HGMA 3CC7P 3CMAP 3H47A 3RG6C 1BAJA 2P9XA 2LF4A 1A43A 2PY8A 1M74A 3HYBA 1YIJP 4IPYA 2Z44A 1RNIA 5DCKA 2PENA 1VQ9P 3G1IA 1VQNP 3CCEP 4U0CA 2OTLP 2M8LA 3G4SP 1K73Q 1VQLP 2QEXP 5I4TG 2JO0A 1NJIQ 1VQ8P 1K8AQ 3DS2A 4XRQA 2PEQA 1VQMP
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1IUQ A;  1K30 A; 
#chains in the Genus database with same CATH topology
 2VLN A;  2CG5 B;  2PNG A;  2FQ1 A;  2CNR A;  2MY5 A;  2BHV A;  3H0D A;  2KOR A;  2QA4 P;  1EOQ A;  3I56 P;  1VHN A;  1HY8 A;  2MVV A;  5HVC A;  2FHS C;  1F80 D;  2AFE A;  5EW5 E;  3CCM P;  2KOP A;  3CD6 P;  1N8R Q;  3DS5 A;  1VKU A;  2MD9 A;  4GR6 A;  2L0Q A;  2PEM A;  3LRY A;  2MR7 A;  5HV8 A;  5KP6 B;  3CPW O;  4U0A A;  1KD1 Q;  3G26 A;  3H4E A;  2K2Q A;  1DNY A;  5KP7 B;  1KQS O;  1EIA A;  2N5I A;  1VQP P;  3CCS P;  1IUQ A;  1EMV A;  2KOO A;  2PEJ A;  2KGC A;  2KG9 A;  2JB0 A;  1YIT P;  5HGM A;  3H47 A;  2EHS A;  2P9X A;  2LF4 A;  1M74 A;  3EJE A;  1VQ9 P;  3G1I A;  1VQN P;  4QKO A;  2M8L A;  3G4S P;  1VQL P;  5I4T G;  3CE7 A;  2FAE A;  1VQ8 P;  1K8A Q;  2X2B A;  1BXI A;  2JYL A;  1E0H A;  1S72 P;  5HGL A;  1YJ9 P;  3B5I A;  1DV5 A;  3CCR P;  2XV6 A;  2KOQ A;  2XXM A;  3GZM A;  1JJ2 O;  4BPG A;  4H2X C;  3HZQ A;  1OR5 A;  3LMO A;  5HGO A;  2Z45 A;  1GXH A;  3VRL C;  1HQB A;  2FVA A;  4U0F A;  3G28 A;  2GYK A;  2WPT A;  3Q20 A;  1YHQ P;  4COC A;  2KGE A;  4XFX A;  3WBH A;  2MF4 A;  2LIW A;  1K9M Q;  2K92 A;  1W2B O;  2JU2 A;  2LIU A;  2LOL A;  3G1G A;  5F2O A;  2GZI A;  4XFZ A;  1A8O A;  1VQO P;  2N98 A;  1IMQ A;  1VQ4 P;  5HGN A;  1QRJ A;  2K0X A;  2KGD A;  4PH0 A;  2LML A;  3I55 P;  3DTJ A;  2FVE A;  3G6E P;  2L9F A;  2VLO A;  4U0B A;  3CCQ P;  2GDX A;  2N50 A;  4R0M A;  2L4B A;  3CCL P;  3NTE A;  3DS0 A;  2GZG A;  2XZ0 D;  2PEK A;  3CMA P;  4MRT C;  2CQ8 A;  1A43 A;  4HKG A;  1RNI A;  4PWV B;  2OTL P;  2K94 A;  2K93 A;  1IMP A;  2JO0 A;  1NJI Q;  1UJZ A;  2LL8 A;  4XRQ A;  1L0I A;  2M5R A;  2CWO A;  2XT1 A;  3GZL A;  3EJD A;  3P05 A;  3G29 A;  4UHP B;  3G21 A;  1GXG A;  1VQ6 P;  1UNK A;  4U0E A;  2KG8 A;  2KR5 A;  1FR2 A;  4WYM A;  1VQ7 P;  2VLP A;  1QVF O;  3GKL C;  2PEI A;  1KC8 Q;  1ZMB A;  2FAD A;  2ONT A;  4XRO A;  3G71 P;  1AUM A;  3G0V A;  3GJN A;  1M1K Q;  1AF8 A;  1KLP A;  1MZ8 A;  3CME P;  1ZNV A;  1Q81 Q;  3CCV P;  5KP8 B;  3OW2 O;  2KWL A;  2FQ2 A;  2XZ1 C;  5EJD A;  1VQK P;  2VLQ A;  3CC4 P;  2GZF A;  4PH1 A;  5BS1 A;  1YI2 P;  2M8N A;  1YJW P;  2FQ0 A;  3RG2 A;  3CCU P;  2FVF A;  1E6J P;  3DS4 A;  2M8P A;  1Z6M A;  2OTJ P;  2NO8 A;  1X3O A;  4H2Y C;  3CXC O;  1Q82 Q;  3DPH A;  3NY7 B;  2N6Y A;  2N5H A;  4PXH B;  2LKI A;  4DG9 A;  2Z44 A;  2GDW A;  2MVU A;  5DCK A;  1T8K A;  1K73 Q;  2LTE A;  2K0D X;  2GDY A;  3DS2 A;  1VQM P;  1GPJ A;  5JPA A;  4GR2 A;  2Z46 A;  2KGA A;  2PEO A;  1CEI A;  2KW2 A;  2JYG A;  4M0I A;  2KOS A;  2K0Y A;  4BPH A;  2CGQ A;  2OAR A;  2AVA A;  2AFD A;  3E2D A;  1D1D A;  4NEO A;  2BUO A;  5BS2 A;  4CA3 A;  2KOD A;  1L0H A;  4F37 A;  2EFJ A;  3U43 A;  3CC2 P;  4XFY A;  3DS3 A;  2KG6 A;  2VSQ A;  4U0D A;  3CCJ P;  4BPF A;  4H2W C;  2ROQ A;  1Q7Y Q;  5F2N A;  5CZD B;  2FAC A;  2JQ4 A;  2E1M A;  1M6E X;  1YJN P;  5F2K A;  2QNW A;  2K5X A;  2ERH A;  1M90 Q;  2GZJ A;  1M6N A;  2DGY A;  2N6Z A;  3DS1 A;  2EG5 A;  2DNW A;  2LPK A;  1ACP A;  2JBG A;  2L22 A;  1QVG O;  3MGE A;  4IZ6 A;  1K30 A;  4COP A;  4QNB A;  1RO0 A;  1VQ5 P;  2L6E A;  1RO2 A;  1Q86 Q;  3M1M A;  2EIA A;  2GZE A;  3CC7 P;  3RG6 C;  1BAJ A;  2EHT A;  2PY8 A;  3EJB A;  3HYB A;  1YIJ P;  4IPY A;  2PEN A;  2JU1 A;  2AF8 A;  3CCE P;  4U0C A;  1AYI A;  2QEX P;  1NQ4 A;  3B4Q A;  2MR8 A;  2JAZ A;  2JGP A;  2PEQ A;  7CEI A; 
#chains in the Genus database with same CATH homology
 2JYL A;  5JPA A;  4GR2 A;  1S72 P;  5HGL A;  2Z46 A;  2CWO A;  1YJ9 P;  2XT1 A;  2PEO A;  3B5I A;  3CCR P;  2JYG A;  4M0I A;  3P05 A;  3G29 A;  2XV6 A;  2XXM A;  2OAR A;  3G21 A;  1JJ2 O;  1VQ6 P;  4U0E A;  1VQ7 P;  4WYM A;  3E2D A;  1D1D A;  3HZQ A;  5HGO A;  2BHV A;  3H0D A;  2Z45 A;  2BUO A;  3VRL C;  1QVF O;  5BS2 A;  2QA4 P;  4U0F A;  3G28 A;  3Q20 A;  2PEI A;  1KC8 Q;  1EOQ A;  1ZMB A;  2KOD A;  1YHQ P;  3I56 P;  2ONT A;  2EFJ A;  4COC A;  4XFX A;  4XRO A;  3WBH A;  3G71 P;  1AUM A;  3CC2 P;  4XFY A;  3G0V A;  1M1K Q;  1K9M Q;  3DS3 A;  3CCM P;  3CME P;  1Q81 Q;  3CCV P;  1W2B O;  3CD6 P;  4U0D A;  3CCJ P;  3OW2 O;  1N8R Q;  3DS5 A;  3G1G A;  1VQK P;  4GR6 A;  1Q7Y Q;  3CC4 P;  5F2N A;  2PEM A;  5F2O A;  2E1M A;  3LRY A;  1M6E X;  4XFZ A;  4PH1 A;  1YJN P;  1A8O A;  5F2K A;  3CPW O;  4U0A A;  5BS1 A;  1VQO P;  1KD1 Q;  3G26 A;  3H4E A;  1YI2 P;  2M8N A;  1M90 Q;  1YJW P;  5HGN A;  1QRJ A;  1VQ4 P;  1M6N A;  2DGY A;  1KQS O;  1EIA A;  3DS1 A;  2EG5 A;  4PH0 A;  3I55 P;  3DTJ A;  3CCU P;  1E6J P;  3G6E P;  3DS4 A;  2M8P A;  4U0B A;  3CCQ P;  1QVG O;  3MGE A;  1VQP P;  2OTJ P;  3CCS P;  1IUQ A;  1K30 A;  4COP A;  4QNB A;  1RO0 A;  1VQ5 P;  2L6E A;  2PEJ A;  1RO2 A;  1Q86 Q;  3CCL P;  3NTE A;  3CXC O;  1Q82 Q;  3DS0 A;  3M1M A;  2EIA A;  1YIT P;  2PEK A;  3DPH A;  5HGM A;  3CC7 P;  3CMA P;  3H47 A;  3RG6 C;  1BAJ A;  2P9X A;  2LF4 A;  1A43 A;  2PY8 A;  1M74 A;  3HYB A;  1YIJ P;  4IPY A;  2Z44 A;  1RNI A;  5DCK A;  2PEN A;  1VQ9 P;  3G1I A;  1VQN P;  3CCE P;  4U0C A;  2OTL P;  2M8L A;  3G4S P;  1K73 Q;  1VQL P;  2QEX P;  5I4T G;  2JO0 A;  1NJI Q;  1VQ8 P;  1K8A Q;  3DS2 A;  4XRQ A;  2PEQ A;  1VQM P; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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