1K6DA

Crystal structure of acetate coa-transferase alpha subunit
Total Genus 66
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
66
sequence length
219
structure length
217
Chain Sequence
MKTKLMTLQDATGFFRDGMTIMVGGFMGIGTPSRLVEALLESGVRDLTLIANDTAFVDTGIGPLIVNGRVRKVIASHIGTNPETGRRMISGEMDVVLVPQGTLIEQIRCGGAGLGGFLTPTGVGTVEGKQTLTLDGKTWLLERPLRADLALIRAHRCDTLGNLTYQLSARNFNPLIALAADITLVEPDELVETGELQPDHIVTPGAVIDHIIVSQES
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords ACETATE COA-TRANSFERASE ALPHA SUBUNIT
publication title Autotracing of Escherichia coli acetate CoA-transferase alpha-subunit structure using 3.4 A MAD and 1.9 A native data.
pubmed doi rcsb
source organism Escherichia coli
molecule tags Transferase
total genus 66
structure length 217
sequence length 219
chains with identical sequence B
ec nomenclature ec 2.8.3.8: Acetate CoA-transferase.
pdb deposition date 2001-10-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01144 CoA_trans Coenzyme A transferase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.1080.10 Alpha Beta 3-Layer(aba) Sandwich Glutaconate Coenzyme A-transferase Glutaconate Coenzyme A-transferase 1k6dA00
2OASA 1K6DA 1OOYA 2NRCA 3K6MA 3QDQA 3RRLB 3D3UA 3EH7A 3RRLA 1OOZA 3OXOA 3CDKA 1M3EA 2AHVA 3CDKB 5DBNB 2AHWA 5DBNA 1POIB 1POIA 2AHUA 3GK7A 2NRBA 3DLXA 2HJ0A 4KGBA 1O9LA 1OPEA 1XR4A
chains in the Genus database with same CATH superfamily
2OASA 1K6DA 1OOYA 2NRCA 3K6MA 3QDQA 3RRLB 3D3UA 3EH7A 3RRLA 1OOZA 3OXOA 3CDKA 1M3EA 2AHVA 3CDKB 5DBNB 2AHWA 5DBNA 1POIB 1POIA 2AHUA 3GK7A 2NRBA 3DLXA 2HJ0A 4KGBA 1O9LA 1OPEA 1XR4A
chains in the Genus database with same CATH topology
2OASA 1K6DA 1OOYA 2NRCA 3K6MA 3QDQA 3RRLB 3D3UA 3EH7A 3RRLA 1OOZA 3OXOA 3CDKA 1M3EA 2AHVA 3CDKB 5DBNB 2AHWA 5DBNA 1POIB 1POIA 2AHUA 3GK7A 2NRBA 3DLXA 2HJ0A 4KGBA 1O9LA 1OPEA 1XR4A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2OAS A;  1K6D A;  1OOY A;  2NRC A;  3K6M A;  3QDQ A;  3RRL B;  3D3U A;  3EH7 A;  3RRL A;  1OOZ A;  3OXO A;  3CDK A;  1M3E A;  2AHV A;  3CDK B;  5DBN B;  2AHW A;  5DBN A;  1POI B;  1POI A;  2AHU A;  3GK7 A;  2NRB A;  3DLX A;  2HJ0 A;  4KGB A;  1O9L A;  1OPE A;  1XR4 A; 
#chains in the Genus database with same CATH topology
 2OAS A;  1K6D A;  1OOY A;  2NRC A;  3K6M A;  3QDQ A;  3RRL B;  3D3U A;  3EH7 A;  3RRL A;  1OOZ A;  3OXO A;  3CDK A;  1M3E A;  2AHV A;  3CDK B;  5DBN B;  2AHW A;  5DBN A;  1POI B;  1POI A;  2AHU A;  3GK7 A;  2NRB A;  3DLX A;  2HJ0 A;  4KGB A;  1O9L A;  1OPE A;  1XR4 A; 
#chains in the Genus database with same CATH homology
 2OAS A;  1K6D A;  1OOY A;  2NRC A;  3K6M A;  3QDQ A;  3RRL B;  3D3U A;  3EH7 A;  3RRL A;  1OOZ A;  3OXO A;  3CDK A;  1M3E A;  2AHV A;  3CDK B;  5DBN B;  2AHW A;  5DBN A;  1POI B;  1POI A;  2AHU A;  3GK7 A;  2NRB A;  3DLX A;  2HJ0 A;  4KGB A;  1O9L A;  1OPE A;  1XR4 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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