1K73G

Co-crystal structure of anisomycin bound to the 50s ribosomal subunit
Total Genus 37
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
37
sequence length
172
structure length
172
Chain Sequence
PRVELEIPEDVDAEQDHLDITVEGDNGSVTRRLWYPDIDVSVDGDTVVIESDEDNAKTMSTIGTFQSHIENMFHGVTEGWEYGMEVFYSHFPMQVNVEGDEVVIENFLGEKAPRRTTIHGDTDVEIDGEELTVSGPDIEAVGQTAADIEQLTRINDKDVRVFQDGVYITRKP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structures of Five Antibiotics Bound at the Peptidyl Transferase Center of the Large Ribosomal Subunit
pubmed doi rcsb
molecule tags Ribosome
molecule keywords 23S RRNA
total genus 37
structure length 172
sequence length 172
ec nomenclature
pdb deposition date 2001-10-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
G PF00347 Ribosomal_L6 Ribosomal protein L6
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.930.12 Alpha Beta Alpha-Beta Complex Outer Surface Protein A; domain 3 Ribosomal protein L6, alpha-beta domain 1k73G01
3.90.930.12 Alpha Beta Alpha-Beta Complex Outer Surface Protein A; domain 3 Ribosomal protein L6, alpha-beta domain 1k73G02
1Q7YG 1KC8G 1VQOE 1K8AG 3CPWE 4WFNE 1W2BE 3G71E 3DLLE 5MLCH 3CMEE 1M90G 1VQ4E 3CC7E 2ZJPE 4IOAE 2CQLA 1YI2E 2ZJRE 1Q82G 3CCME 4IOCE 1VQ8E 3CC4E 1Q86G 1S72E 2QEXE 3G6EE 1VQPE 4U67E 4WFAE 1YJNE 3CCRE 1M1KG 3CCQE 3PIPE 4UY8G 1VQ6E 3CF5E 5GAEG 1YIJE 1VQ7E 5H1SI 5DM6E 1NJIG 1YHQE 5GAHG 5DM7E 1VQNE 3PIOE 3CD6E 3OW2E 1QVFE 5GAGG 3I55E 3I56E 1YJ9E 3CCUE 5GADG 1VQKE 4WF9E 5HL7E 4IO9E 1RL6A 3J7ZG 1Q81G 3CXCE 3CCEE 1VQLE 2ZJQE 4WCEE 2QA4E 1K9MG 4WFBE 5JVGE 1VQ5E 3CCLE 1KD1G 3CCVE 5AN9B 1N8RG 1JJ2E 1K73G 1YITE 3G4SE 1VQME 1QVGE 3CCSE 3CC2E 2OTLE 5JVHE 1KQSE 3CCJE 1VQ9E 3CMAE 2OTJE 1YJWE
chains in the Genus database with same CATH superfamily
1Q7YG 3CKFA 1KC8G 1VQOE 1K8AG 3CPWE 4WFNE 1W2BE 2OL6O 3G71E 3DLLE 5MLCH 3CMEE 1M90G 1VQ4E 3CC7E 2ZJPE 4IOAE 2CQLA 3CKGA 2FKJA 1YI2E 2ZJRE 1Q82G 3CCME 4IOCE 2OL7A 1VQ8E 3IG9A 3CC4E 5B10O 1Q86G 1S72E 2QEXE 3G6EE 1VQPE 2I5VO 4U67E 4WFAE 1YJNE 3CCRE 1M1KG 3CCQE 2G8CO 3PIPE 4UY8G 1VQ6E 3CF5E 5GAEG 1YIJE 1VQ7E 5H1SI 5DM6E 1NJIG 1YHQE 1RJLC 2OY5O 5GAHG 5DM7E 1VQNE 3PIOE 3CD6E 3OW2E 5B2AO 1QVFE 2HKDA 1FJ1E 5GAGG 3I55E 3I56E 5B11O 1YJ9E 2OY1O 3IGEA 3CCUE 2OL8O 5GADG 1VQKE 4WF9E 2OY8A 2PI3O 2OY7A 5HL7E 4IO9E 3EC5A 2AF5A 1RL6A 3J7ZG 1Q81G 3CXCE 3CCEE 1VQLE 2ZJQE 4WCEE 2QA4E 3AUMO 1K9MG 4WFBE 5JVGE 1VQ5E 3CCLE 1KD1G 2OYBO 3CCVE 5AN9B 1N8RG 2I5ZO 1JJ2E 1K73G 1YITE 3G4SE 1VQME 1QVGE 1OSPO 3CCSE 3CC2E 2OTLE 5B3MO 1P4PA 5JVHE 1KQSE 3CCJE 1VQ9E 3CMAE 2FKGA 2OTJE 1YJWE
chains in the Genus database with same CATH topology
1Q7YG 1KC8G 1VQOE 1K8AG 3CPWE 4WFNE 1W2BE 3G71E 3DLLE 5MLCH 3CMEE 1M90G 1VQ4E 3CC7E 2ZJPE 4IOAE 2CQLA 1YI2E 2ZJRE 1Q82G 3CCME 4IOCE 1VQ8E 3CC4E 1Q86G 1S72E 2QEXE 3G6EE 1VQPE 4U67E 4WFAE 1YJNE 3CCRE 1M1KG 3CCQE 3PIPE 4UY8G 1VQ6E 3CF5E 5GAEG 1YIJE 1VQ7E 5H1SI 5DM6E 1NJIG 1YHQE 5GAHG 5DM7E 1VQNE 3PIOE 3CD6E 3OW2E 1QVFE 5GAGG 3I55E 3I56E 1YJ9E 3CCUE 5GADG 1VQKE 4WF9E 5HL7E 4IO9E 1RL6A 3J7ZG 1Q81G 3CXCE 3CCEE 1VQLE 2ZJQE 4WCEE 2QA4E 1K9MG 4WFBE 5JVGE 1VQ5E 3CCLE 1KD1G 3CCVE 5AN9B 1N8RG 1JJ2E 1K73G 1YITE 3G4SE 1VQME 1QVGE 3CCSE 3CC2E 2OTLE 5JVHE 1KQSE 3CCJE 1VQ9E 3CMAE 2OTJE 1YJWE
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1Q7Y G;  1KC8 G;  1VQO E;  1K8A G;  3CPW E;  4WFN E;  1W2B E;  3G71 E;  3DLL E;  5MLC H;  3CME E;  1M90 G;  1VQ4 E;  3CC7 E;  2ZJP E;  4IOA E;  2CQL A;  1YI2 E;  2ZJR E;  1Q82 G;  3CCM E;  4IOC E;  1VQ8 E;  3CC4 E;  1Q86 G;  1S72 E;  2QEX E;  3G6E E;  1VQP E;  4U67 E;  4WFA E;  1YJN E;  3CCR E;  1M1K G;  3CCQ E;  3PIP E;  4UY8 G;  1VQ6 E;  3CF5 E;  5GAE G;  1YIJ E;  1VQ7 E;  5H1S I;  5DM6 E;  1NJI G;  1YHQ E;  5GAH G;  5DM7 E;  1VQN E;  3PIO E;  3CD6 E;  3OW2 E;  1QVF E;  5GAG G;  3I55 E;  3I56 E;  1YJ9 E;  3CCU E;  5GAD G;  1VQK E;  4WF9 E;  5HL7 E;  4IO9 E;  1RL6 A;  3J7Z G;  1Q81 G;  3CXC E;  3CCE E;  1VQL E;  2ZJQ E;  4WCE E;  2QA4 E;  1K9M G;  4WFB E;  5JVG E;  1VQ5 E;  3CCL E;  1KD1 G;  3CCV E;  5AN9 B;  1N8R G;  1JJ2 E;  1K73 G;  1YIT E;  3G4S E;  1VQM E;  1QVG E;  3CCS E;  3CC2 E;  2OTL E;  5JVH E;  1KQS E;  3CCJ E;  1VQ9 E;  3CMA E;  2OTJ E;  1YJW E; 
#chains in the Genus database with same CATH topology
 1Q7Y G;  3CKF A;  1KC8 G;  1VQO E;  1K8A G;  3CPW E;  4WFN E;  1W2B E;  2OL6 O;  3G71 E;  3DLL E;  5MLC H;  3CME E;  1M90 G;  1VQ4 E;  3CC7 E;  2ZJP E;  4IOA E;  2CQL A;  3CKG A;  2FKJ A;  1YI2 E;  2ZJR E;  1Q82 G;  3CCM E;  4IOC E;  2OL7 A;  1VQ8 E;  3IG9 A;  3CC4 E;  5B10 O;  1Q86 G;  1S72 E;  2QEX E;  3G6E E;  1VQP E;  2I5V O;  4U67 E;  4WFA E;  1YJN E;  3CCR E;  1M1K G;  3CCQ E;  2G8C O;  3PIP E;  4UY8 G;  1VQ6 E;  3CF5 E;  5GAE G;  1YIJ E;  1VQ7 E;  5H1S I;  5DM6 E;  1NJI G;  1YHQ E;  1RJL C;  2OY5 O;  5GAH G;  5DM7 E;  1VQN E;  3PIO E;  3CD6 E;  3OW2 E;  5B2A O;  1QVF E;  2HKD A;  1FJ1 E;  5GAG G;  3I55 E;  3I56 E;  5B11 O;  1YJ9 E;  2OY1 O;  3IGE A;  3CCU E;  2OL8 O;  5GAD G;  1VQK E;  4WF9 E;  2OY8 A;  2PI3 O;  2OY7 A;  5HL7 E;  4IO9 E;  3EC5 A;  2AF5 A;  1RL6 A;  3J7Z G;  1Q81 G;  3CXC E;  3CCE E;  1VQL E;  2ZJQ E;  4WCE E;  2QA4 E;  3AUM O;  1K9M G;  4WFB E;  5JVG E;  1VQ5 E;  3CCL E;  1KD1 G;  2OYB O;  3CCV E;  5AN9 B;  1N8R G;  2I5Z O;  1JJ2 E;  1K73 G;  1YIT E;  3G4S E;  1VQM E;  1QVG E;  1OSP O;  3CCS E;  3CC2 E;  2OTL E;  5B3M O;  1P4P A;  5JVH E;  1KQS E;  3CCJ E;  1VQ9 E;  3CMA E;  2FKG A;  2OTJ E;  1YJW E; 
#chains in the Genus database with same CATH homology
 1Q7Y G;  1KC8 G;  1VQO E;  1K8A G;  3CPW E;  4WFN E;  1W2B E;  3G71 E;  3DLL E;  5MLC H;  3CME E;  1M90 G;  1VQ4 E;  3CC7 E;  2ZJP E;  4IOA E;  2CQL A;  1YI2 E;  2ZJR E;  1Q82 G;  3CCM E;  4IOC E;  1VQ8 E;  3CC4 E;  1Q86 G;  1S72 E;  2QEX E;  3G6E E;  1VQP E;  4U67 E;  4WFA E;  1YJN E;  3CCR E;  1M1K G;  3CCQ E;  3PIP E;  4UY8 G;  1VQ6 E;  3CF5 E;  5GAE G;  1YIJ E;  1VQ7 E;  5H1S I;  5DM6 E;  1NJI G;  1YHQ E;  5GAH G;  5DM7 E;  1VQN E;  3PIO E;  3CD6 E;  3OW2 E;  1QVF E;  5GAG G;  3I55 E;  3I56 E;  1YJ9 E;  3CCU E;  5GAD G;  1VQK E;  4WF9 E;  5HL7 E;  4IO9 E;  1RL6 A;  3J7Z G;  1Q81 G;  3CXC E;  3CCE E;  1VQL E;  2ZJQ E;  4WCE E;  2QA4 E;  1K9M G;  4WFB E;  5JVG E;  1VQ5 E;  3CCL E;  1KD1 G;  3CCV E;  5AN9 B;  1N8R G;  1JJ2 E;  1K73 G;  1YIT E;  3G4S E;  1VQM E;  1QVG E;  3CCS E;  3CC2 E;  2OTL E;  5JVH E;  1KQS E;  3CCJ E;  1VQ9 E;  3CMA E;  2OTJ E;  1YJW E; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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