1K7TA

Crystal structure analysis of crosslinked-wga3/glcnacbeta1,6gal complex
Total Genus 40
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
40
sequence length
171
structure length
171
Chain Sequence
ERCGEQGSGMECPNNLCCSQYGYCGMGGDYCGKGCQNGACWTSKRCGSQAGGKTCPNNHCCSQYGHCGFGAEYCGAGCQGGPCRADIKCGSQAGGKLCPNNLCCSQWGYCGLGSEFCGEGCQNGACSTDKPCGKDAGGRVCTNNYCCSKWGSCGIGPGYCGAGCQSGGCDG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Sugar binding protein
molecule keywords agglutinin isolectin 3
publication title Interactions of wheat-germ agglutinin with GlcNAc beta 1,6Gal sequence
pubmed doi rcsb
total genus 40
structure length 171
sequence length 171
chains with identical sequence B
ec nomenclature
pdb deposition date 2001-10-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00187 Chitin_bind_1 Chitin recognition protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.60.10 Alpha Beta 2-Layer Sandwich Wheat Germ Agglutinin (Isolectin 2); domain 1 Endochitinase-like 1k7tA02
3.30.60.10 Alpha Beta 2-Layer Sandwich Wheat Germ Agglutinin (Isolectin 2); domain 1 Endochitinase-like 1k7tA03
3.30.60.10 Alpha Beta 2-Layer Sandwich Wheat Germ Agglutinin (Isolectin 2); domain 1 Endochitinase-like 1k7tA01
3.30.60.10 Alpha Beta 2-Layer Sandwich Wheat Germ Agglutinin (Isolectin 2); domain 1 Endochitinase-like 1k7tA04
2X52A 1WGTA 4AMLA 1UHAA 9WGAA 2WGCA 2CWGA 1ULNA 4WP4A 1WGCA 2X3TA 1ULMA 2UVOA 1K7UA 1P9ZA 1K7VA 1WKXA 1ULKA 2LB7A 7WGAA 1HEVA 4MPIA 2DKVA 1Q9BA 1K7TA 1P9GA
chains in the Genus database with same CATH superfamily
5CCMA 1SGDI 2LEOA 2VRWB 3FSXA 4AMLA 2ERWA 2GIVA 5J8FA 1CT0I 1UHAA 2W0TA 4GI3C 2OU2A 1BUSA 1TBQR 1UVFA 1FAQA 2CWGA 2CWFA 2GVIA 4A24A 1UVGA 1MJ9A 2K9HA 2NU1I 1IY6A 2RC4A 4E1RA 2CWHA 2OD1A 1VDDA 1NUBA 4OVOA 2NU2I 1IW4A 1IY5A 3OVOA 5FUWA 2N52A 2DB6A 4SGBI 3E2IA 3UEYA 1WKXA 5J8CA 1LR8A 2JXDA 1CE3A 4DNCA 4HGUA 2QQDA 1WTJA 3VE5A 1X74A 2ARPF 1KMAA 1OMUA 1PJUA 2DKVA 1OVOA 2ELIA 1Q9BA 3HH2C 3TOAA 2N1AB 1TBNA 5E3PA 2KMRA 1R79A 1CT4I 2CJSC 1PCEA 2J87A 3R5BA 2B0UC 3BJIA 5EX3A 2NU0I 2J9RA 3TOBA 2V1CA 1YU6C 1SGPI 1Y1BA 3FSYA 1TUSA 2SGQI 3CXLA 2WVJA 4WP4A 5FUVA 5DAEA 2X3TA 4UXIA 3E59A 4UXHA 2RIJA 1MJAA 1ULMA 2A20A 5E3RA 1Y8FA 2FNFX 1UUCA 2F3CI 1XA6A 2UVOA 3UGIA 3OXLA 1Z7KB 1RFHA 1V1HA 3OXGA 1K7VA 1Y1CA 1AN1I 5E3QA 2E73A 1SGYI 2JYYA 3TO7A 1MJBA 1W4RA 2XRCA 1ULKA 1H0ZA 2ODDA 1Z2IA 3RU0A 5HQ8A 2GKTI 3SEKC 5JHWC 2GKRI 1XBTA 1NXUA 2L8EA 2WCYA 1PTQA 1LR7A 2DIPA 2ORWA 1TGSI 1CT2I 1CSOI 1OMTA 1HJAI 3SGQI 3GOXA 1CGJI 1SGEI 1FY7A 3KY9A 1HDLA 5FUXA 2E5RA 1TBOA 2X52A 1WGTA 3UGLA 2JA1A 2V1CC 2SGEI 2YUUA 3VDUA 3SGBI 3UGDA 1PTRA 1TURA 9WGAA 4B6DA 3TO6A 2B8TA 2QQCA 1M8CA 2WGCA 3QTLD 3TO9A 2QQEA 2L7XA 4E1PA 1PPFI 1WGCA 3OXFA 2JZMA 1SGQI 1FARA 2QPOA 3TJQA 3UFFA 3B4VC 1DS2I 1K7UA 3R5CA 3UOEA 1TOTA 5EX0A 1KBFA 1SGRI 1XX6A 2KMPA 2M5XA 2SGDI 7WGAA 5CCLA 2YQPA 5HI7A 1HEVA 2ENNA 3UEJA 4MPIA 1U5KA 4FKDA 1M8BA 2SGPI 1TIHA 2P6AC 1K7TA 2OVOA 1P9GA 3OL0A 2N71A 1TBRR 2NU4I 2GKVA 2SGFI 1FYBA 2KCXA 2Y0MA 1BMOA 3MEKA 1R0RI 1V1IA 1YTPA 2UZ3A 1ULNA 3R5DA 2JW6A 2ROWA 2V53A 3D00A 2QQ0A 4L9MA 1KBEA 1W3SA 3QWPA 4JCVE 1HPTA 2LUYA 2N17A 5FUYA 1N13A 1DS3I 1OYVI 1P9ZA 2ENZA 2KMOA 2OZUA 3QAHA 1CGII 1CHOI 2ORVA 3FC3A 4UXJA 2LB7A 2NU3I 3R5AA 1LR9A 2KMQA 3PDNA 1X4SA 1S20A 1SGNI 1MT1A 3VDPA 2PQ8A 2BUSA
chains in the Genus database with same CATH topology
2X52A 1WGTA 4AMLA 1UHAA 9WGAA 2WGCA 2CWGA 1ULNA 4WP4A 1WGCA 2X3TA 1ULMA 2UVOA 1K7UA 1P9ZA 1K7VA 1WKXA 1ULKA 2LB7A 7WGAA 1HEVA 4MPIA 2DKVA 1Q9BA 1K7TA 1P9GA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2X52 A;  1WGT A;  4AML A;  1UHA A;  9WGA A;  2WGC A;  2CWG A;  1ULN A;  4WP4 A;  1WGC A;  2X3T A;  1ULM A;  2UVO A;  1K7U A;  1P9Z A;  1K7V A;  1WKX A;  1ULK A;  2LB7 A;  7WGA A;  1HEV A;  4MPI A;  2DKV A;  1Q9B A;  1K7T A;  1P9G A; 
#chains in the Genus database with same CATH topology
 5CCM A;  1SGD I;  2LEO A;  2VRW B;  3FSX A;  4AML A;  2ERW A;  2GIV A;  5J8F A;  1CT0 I;  1UHA A;  2W0T A;  4GI3 C;  2OU2 A;  1BUS A;  1TBQ R;  1UVF A;  1FAQ A;  2CWG A;  2CWF A;  2GVI A;  4A24 A;  1UVG A;  1MJ9 A;  2K9H A;  2NU1 I;  1IY6 A;  2RC4 A;  4E1R A;  2CWH A;  2OD1 A;  1VDD A;  1NUB A;  4OVO A;  2NU2 I;  1IW4 A;  1IY5 A;  3OVO A;  5FUW A;  2N52 A;  2DB6 A;  4SGB I;  3E2I A;  3UEY A;  1WKX A;  5J8C A;  1LR8 A;  2JXD A;  1CE3 A;  4DNC A;  4HGU A;  2QQD A;  1WTJ A;  3VE5 A;  1X74 A;  2ARP F;  1KMA A;  1OMU A;  1PJU A;  2DKV A;  1OVO A;  2ELI A;  1Q9B A;  3HH2 C;  3TOA A;  2N1A B;  1TBN A;  5E3P A;  2KMR A;  1R79 A;  1CT4 I;  2CJS C;  1PCE A;  2J87 A;  3R5B A;  2B0U C;  3BJI A;  5EX3 A;  2NU0 I;  2J9R A;  3TOB A;  2V1C A;  1YU6 C;  1SGP I;  1Y1B A;  3FSY A;  1TUS A;  2SGQ I;  3CXL A;  2WVJ A;  4WP4 A;  5FUV A;  5DAE A;  2X3T A;  4UXI A;  3E59 A;  4UXH A;  2RIJ A;  1MJA A;  1ULM A;  2A20 A;  5E3R A;  1Y8F A;  2FNF X;  1UUC A;  2F3C I;  1XA6 A;  2UVO A;  3UGI A;  3OXL A;  1Z7K B;  1RFH A;  1V1H A;  3OXG A;  1K7V A;  1Y1C A;  1AN1 I;  5E3Q A;  2E73 A;  1SGY I;  2JYY A;  3TO7 A;  1MJB A;  1W4R A;  2XRC A;  1ULK A;  1H0Z A;  2ODD A;  1Z2I A;  3RU0 A;  5HQ8 A;  2GKT I;  3SEK C;  5JHW C;  2GKR I;  1XBT A;  1NXU A;  2L8E A;  2WCY A;  1PTQ A;  1LR7 A;  2DIP A;  2ORW A;  1TGS I;  1CT2 I;  1CSO I;  1OMT A;  1HJA I;  3SGQ I;  3GOX A;  1CGJ I;  1SGE I;  1FY7 A;  3KY9 A;  1HDL A;  5FUX A;  2E5R A;  1TBO A;  2X52 A;  1WGT A;  3UGL A;  2JA1 A;  2V1C C;  2SGE I;  2YUU A;  3VDU A;  3SGB I;  3UGD A;  1PTR A;  1TUR A;  9WGA A;  4B6D A;  3TO6 A;  2B8T A;  2QQC A;  1M8C A;  2WGC A;  3QTL D;  3TO9 A;  2QQE A;  2L7X A;  4E1P A;  1PPF I;  1WGC A;  3OXF A;  2JZM A;  1SGQ I;  1FAR A;  2QPO A;  3TJQ A;  3UFF A;  3B4V C;  1DS2 I;  1K7U A;  3R5C A;  3UOE A;  1TOT A;  5EX0 A;  1KBF A;  1SGR I;  1XX6 A;  2KMP A;  2M5X A;  2SGD I;  7WGA A;  5CCL A;  2YQP A;  5HI7 A;  1HEV A;  2ENN A;  3UEJ A;  4MPI A;  1U5K A;  4FKD A;  1M8B A;  2SGP I;  1TIH A;  2P6A C;  1K7T A;  2OVO A;  1P9G A;  3OL0 A;  2N71 A;  1TBR R;  2NU4 I;  2GKV A;  2SGF I;  1FYB A;  2KCX A;  2Y0M A;  1BMO A;  3MEK A;  1R0R I;  1V1I A;  1YTP A;  2UZ3 A;  1ULN A;  3R5D A;  2JW6 A;  2ROW A;  2V53 A;  3D00 A;  2QQ0 A;  4L9M A;  1KBE A;  1W3S A;  3QWP A;  4JCV E;  1HPT A;  2LUY A;  2N17 A;  5FUY A;  1N13 A;  1DS3 I;  1OYV I;  1P9Z A;  2ENZ A;  2KMO A;  2OZU A;  3QAH A;  1CGI I;  1CHO I;  2ORV A;  3FC3 A;  4UXJ A;  2LB7 A;  2NU3 I;  3R5A A;  1LR9 A;  2KMQ A;  3PDN A;  1X4S A;  1S20 A;  1SGN I;  1MT1 A;  3VDP A;  2PQ8 A;  2BUS A; 
#chains in the Genus database with same CATH homology
 2X52 A;  1WGT A;  4AML A;  1UHA A;  9WGA A;  2WGC A;  2CWG A;  1ULN A;  4WP4 A;  1WGC A;  2X3T A;  1ULM A;  2UVO A;  1K7U A;  1P9Z A;  1K7V A;  1WKX A;  1ULK A;  2LB7 A;  7WGA A;  1HEV A;  4MPI A;  2DKV A;  1Q9B A;  1K7T A;  1P9G A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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