1K7TA

Crystal structure analysis of crosslinked-wga3/glcnacbeta1,6gal complex
Total Genus 40
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
40
sequence length
171
structure length
171
Chain Sequence
ERCGEQGSGMECPNNLCCSQYGYCGMGGDYCGKGCQNGACWTSKRCGSQAGGKTCPNNHCCSQYGHCGFGAEYCGAGCQGGPCRADIKCGSQAGGKLCPNNLCCSQWGYCGLGSEFCGEGCQNGACSTDKPCGKDAGGRVCTNNYCCSKWGSCGIGPGYCGAGCQSGGCDG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Sugar binding protein
molecule keywords agglutinin isolectin 3
publication title Interactions of wheat-germ agglutinin with GlcNAc beta 1,6Gal sequence
pubmed doi rcsb
total genus 40
structure length 171
sequence length 171
chains with identical sequence B
ec nomenclature
pdb deposition date 2001-10-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00187 Chitin_bind_1 Chitin recognition protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.60.10 Alpha Beta 2-Layer Sandwich Wheat Germ Agglutinin (Isolectin 2); domain 1 Endochitinase-like 1k7tA02
3.30.60.10 Alpha Beta 2-Layer Sandwich Wheat Germ Agglutinin (Isolectin 2); domain 1 Endochitinase-like 1k7tA03
3.30.60.10 Alpha Beta 2-Layer Sandwich Wheat Germ Agglutinin (Isolectin 2); domain 1 Endochitinase-like 1k7tA01
3.30.60.10 Alpha Beta 2-Layer Sandwich Wheat Germ Agglutinin (Isolectin 2); domain 1 Endochitinase-like 1k7tA04
2LB7A 4AMLA 1WGCA 4MPIA 2X52A 2CWGA 1WKXA 1K7UA 1K7TA 1ULMA 1P9GA 2X3TA 1K7VA 2UVOA 1UHAA 4WP4A 1ULNA 1HEVA 1ULKA 9WGAA 1WGTA 2DKVA 1Q9BA 2WGCA 7WGAA 1P9ZA
chains in the Genus database with same CATH superfamily
2LEOA 1KBFA 1TGSI 1CE3A 2OVOA 3PDNA 1DS3I 1TUSA 2GVIA 4MPIA 1M8BA 1M8CA 1TIHA 1UVGA 1WKXA 2QQEA 1NXUA 2NU4I 5E3PA 4UXIA 3UFFA 2DIPA 1P9GA 2BUSA 5EX3A 2KCXA 3E59A 2P6AC 2CJSC 1R0RI 2ORWA 2N52A 1TBQR 4UXJA 4L9MA 1SGEI 4A24A 5J8FA 1AN1I 2QQ0A 2DB6A 3TO7A 3OXGA 1TBNA 2VRWB 3KY9A 1TOTA 1HEVA 2GKTI 2KMQA 3TOBA 2E73A 1DS2I 2V53A 4E1RA 3VE5A 5E3RA 2CWHA 2KMOA 7WGAA 3TJQA 2ODDA 1BUSA 2LB7A 1IY5A 1XBTA 3UEJA 1WGCA 3TO6A 1MJ9A 2RIJA 3OL0A 2JYYA 3D00A 1SGRI 3MEKA 1HPTA 1V1HA 2UZ3A 1K7UA 4FKDA 3FSYA 1LR7A 2B0UC 1SGPI 1VDDA 1TURA 1UVFA 2OD1A 2K9HA 3OVOA 1CHOI 2ROWA 2NU1I 1SGQI 2ELIA 2N1AB 3R5CA 1CT4I 3SGBI 4E1PA 3VDUA 5FUYA 2L7XA 3HH2C 4SGBI 1IY6A 1N13A 2J87A 1UHAA 4GI3C 1FYBA 4WP4A 3E2IA 3UGLA 3B4VC 1PTRA 1MT1A 3TO9A 1ULKA 2JZMA 2N71A 1V1IA 1Q9BA 2YUUA 3SEKC 2WCYA 1CT0I 1XA6A 3UOEA 1LR8A 3R5DA 1HDLA 4JCVE 1XX6A 1Z2IA 2KMRA 3QAHA 5FUWA 5FUXA 5HI7A 1CGJI 5JHWC 2QPOA 2SGFI 1Z7KB 2X52A 2CWGA 1TBRR 1S20A 3SGQI 1OVOA 1UUCA 2JW6A 2XRCA 2NU3I 3BJIA 3R5BA 5FUVA 5CCLA 1OMTA 1K7VA 1CGII 2ORVA 4B6DA 2M5XA 3RU0A 1X4SA 2B8TA 2Y0MA 1MJAA 1FY7A 2SGQI 5DAEA 2UVOA 2SGDI 3VDPA 1FAQA 1Y1BA 4OVOA 1OYVI 3FC3A 2OZUA 1SGNI 2V1CA 2GKRI 1ULNA 2E5RA 3CXLA 5CCMA 2NU2I 1Y1CA 2ERWA 2FNFX 1WTJA 1KBEA 1CT2I 1WGTA 1SGDI 2SGEI 3QTLD 3QWPA 2RC4A 3UEYA 3UGIA 4DNCA 2V1CC 1BMOA 2SGPI 2WGCA 2ARPF 2OU2A 2PQ8A 1FARA 4AMLA 2N17A 1CSOI 2A20A 3TOAA 1HJAI 2GIVA 1U5KA 4UXHA 5J8CA 1IW4A 2ENZA 3R5AA 2GKVA 2CWFA 1PTQA 1KMAA 3FSXA 2W0TA 1Y8FA 1K7TA 2JA1A 2L8EA 1YTPA 1NUBA 1ULMA 2X3TA 3OXFA 1LR9A 2NU0I 2YQPA 1TBOA 1OMUA 1PPFI 2LUYA 1H0ZA 3UGDA 1X74A 2J9RA 2QQCA 4HGUA 5E3QA 3GOXA 1MJBA 1RFHA 2JXDA 2QQDA 5HQ8A 2ENNA 2KMPA 5EX0A 1SGYI 9WGAA 1W3SA 2WVJA 1PCEA 1YU6C 2DKVA 1W4RA 1R79A 2F3CI 1P9ZA 1PJUA 3OXLA
chains in the Genus database with same CATH topology
2LB7A 4AMLA 1WGCA 4MPIA 2X52A 2CWGA 1WKXA 1K7UA 1K7TA 1ULMA 1P9GA 2X3TA 1K7VA 2UVOA 1UHAA 4WP4A 1ULNA 1HEVA 1ULKA 9WGAA 1WGTA 2DKVA 1Q9BA 2WGCA 7WGAA 1P9ZA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2LB7 A;  4AML A;  1WGC A;  4MPI A;  2X52 A;  2CWG A;  1WKX A;  1K7U A;  1K7T A;  1ULM A;  1P9G A;  2X3T A;  1K7V A;  2UVO A;  1UHA A;  4WP4 A;  1ULN A;  1HEV A;  1ULK A;  9WGA A;  1WGT A;  2DKV A;  1Q9B A;  2WGC A;  7WGA A;  1P9Z A; 
#chains in the Genus database with same CATH topology
 2LEO A;  1KBF A;  1TGS I;  1CE3 A;  2OVO A;  3PDN A;  1DS3 I;  1TUS A;  2GVI A;  4MPI A;  1M8B A;  1M8C A;  1TIH A;  1UVG A;  1WKX A;  2QQE A;  1NXU A;  2NU4 I;  5E3P A;  4UXI A;  3UFF A;  2DIP A;  1P9G A;  2BUS A;  5EX3 A;  2KCX A;  3E59 A;  2P6A C;  2CJS C;  1R0R I;  2ORW A;  2N52 A;  1TBQ R;  4UXJ A;  4L9M A;  1SGE I;  4A24 A;  5J8F A;  1AN1 I;  2QQ0 A;  2DB6 A;  3TO7 A;  3OXG A;  1TBN A;  2VRW B;  3KY9 A;  1TOT A;  1HEV A;  2GKT I;  2KMQ A;  3TOB A;  2E73 A;  1DS2 I;  2V53 A;  4E1R A;  3VE5 A;  5E3R A;  2CWH A;  2KMO A;  7WGA A;  3TJQ A;  2ODD A;  1BUS A;  2LB7 A;  1IY5 A;  1XBT A;  3UEJ A;  1WGC A;  3TO6 A;  1MJ9 A;  2RIJ A;  3OL0 A;  2JYY A;  3D00 A;  1SGR I;  3MEK A;  1HPT A;  1V1H A;  2UZ3 A;  1K7U A;  4FKD A;  3FSY A;  1LR7 A;  2B0U C;  1SGP I;  1VDD A;  1TUR A;  1UVF A;  2OD1 A;  2K9H A;  3OVO A;  1CHO I;  2ROW A;  2NU1 I;  1SGQ I;  2ELI A;  2N1A B;  3R5C A;  1CT4 I;  3SGB I;  4E1P A;  3VDU A;  5FUY A;  2L7X A;  3HH2 C;  4SGB I;  1IY6 A;  1N13 A;  2J87 A;  1UHA A;  4GI3 C;  1FYB A;  4WP4 A;  3E2I A;  3UGL A;  3B4V C;  1PTR A;  1MT1 A;  3TO9 A;  1ULK A;  2JZM A;  2N71 A;  1V1I A;  1Q9B A;  2YUU A;  3SEK C;  2WCY A;  1CT0 I;  1XA6 A;  3UOE A;  1LR8 A;  3R5D A;  1HDL A;  4JCV E;  1XX6 A;  1Z2I A;  2KMR A;  3QAH A;  5FUW A;  5FUX A;  5HI7 A;  1CGJ I;  5JHW C;  2QPO A;  2SGF I;  1Z7K B;  2X52 A;  2CWG A;  1TBR R;  1S20 A;  3SGQ I;  1OVO A;  1UUC A;  2JW6 A;  2XRC A;  2NU3 I;  3BJI A;  3R5B A;  5FUV A;  5CCL A;  1OMT A;  1K7V A;  1CGI I;  2ORV A;  4B6D A;  2M5X A;  3RU0 A;  1X4S A;  2B8T A;  2Y0M A;  1MJA A;  1FY7 A;  2SGQ I;  5DAE A;  2UVO A;  2SGD I;  3VDP A;  1FAQ A;  1Y1B A;  4OVO A;  1OYV I;  3FC3 A;  2OZU A;  1SGN I;  2V1C A;  2GKR I;  1ULN A;  2E5R A;  3CXL A;  5CCM A;  2NU2 I;  1Y1C A;  2ERW A;  2FNF X;  1WTJ A;  1KBE A;  1CT2 I;  1WGT A;  1SGD I;  2SGE I;  3QTL D;  3QWP A;  2RC4 A;  3UEY A;  3UGI A;  4DNC A;  2V1C C;  1BMO A;  2SGP I;  2WGC A;  2ARP F;  2OU2 A;  2PQ8 A;  1FAR A;  4AML A;  2N17 A;  1CSO I;  2A20 A;  3TOA A;  1HJA I;  2GIV A;  1U5K A;  4UXH A;  5J8C A;  1IW4 A;  2ENZ A;  3R5A A;  2GKV A;  2CWF A;  1PTQ A;  1KMA A;  3FSX A;  2W0T A;  1Y8F A;  1K7T A;  2JA1 A;  2L8E A;  1YTP A;  1NUB A;  1ULM A;  2X3T A;  3OXF A;  1LR9 A;  2NU0 I;  2YQP A;  1TBO A;  1OMU A;  1PPF I;  2LUY A;  1H0Z A;  3UGD A;  1X74 A;  2J9R A;  2QQC A;  4HGU A;  5E3Q A;  3GOX A;  1MJB A;  1RFH A;  2JXD A;  2QQD A;  5HQ8 A;  2ENN A;  2KMP A;  5EX0 A;  1SGY I;  9WGA A;  1W3S A;  2WVJ A;  1PCE A;  1YU6 C;  2DKV A;  1W4R A;  1R79 A;  2F3C I;  1P9Z A;  1PJU A;  3OXL A; 
#chains in the Genus database with same CATH homology
 2LB7 A;  4AML A;  1WGC A;  4MPI A;  2X52 A;  2CWG A;  1WKX A;  1K7U A;  1K7T A;  1ULM A;  1P9G A;  2X3T A;  1K7V A;  2UVO A;  1UHA A;  4WP4 A;  1ULN A;  1HEV A;  1ULK A;  9WGA A;  1WGT A;  2DKV A;  1Q9B A;  2WGC A;  7WGA A;  1P9Z A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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