1K83F

Crystal structure of yeast rna polymerase ii complexed with the inhibitor alpha amanitin
Total Genus 23
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
23
sequence length
84
structure length
84
Chain Sequence
KAIPKDQRATTPYMTKYERARILGTRALQISMNAPVFVDLEGETDPLRIAMKELAEKKIPLVIRRYLPDGSFEDWSVEELIVDL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transcription/toxin
molecule keywords DNA-DIRECTED RNA POLYMERASE II LARGEST SUBUNIT
publication title Structural Basis of Transcription: Alpha-Amanitin-RNA Polymerase II Cocrystal at 2.8 A Resolution.
pubmed doi rcsb
total genus 23
structure length 84
sequence length 84
ec nomenclature
pdb deposition date 2001-10-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
F PF01192 RNA_pol_Rpb6 RNA polymerase Rpb6
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.940.10 Alpha Beta Alpha-Beta Complex Eukaryotic RPB6 RNA polymerase subunit Eukaryotic RPB6 RNA polymerase subunit 1k83F00
2E2HF 3GTGF 3S1MF 4BBRF 4MQ9E 4C3IF 4YFKE 3S16F 4A3GF 5M3MF 1Y1VF 5C4XF 4LLGE 4A93F 2A69E 2R93F 3S1RF 4OINE 4A3FF 5D4DE 2PMZK 4YG2E 3S2DF 4Y7NF 4A3LF 3HOUF 4G7OE 1TWGF 2O5JE 3S2HF 3WODE 2NVYF 4XLPE 1YNNK 4G7ZE 4A3JF 2R7ZF 3S17F 4A3DF 1TWHF 5D4EE 2R92F 3M4OF 1TWAF 4A3BF 4A3KF 2A6EE 3HOZF 2E2IF 5IYDF 1QKLA 4A3CF 5FJ8F 2JA5F 2CW0E 5C4JF 5BYHE 3S15F 5M5YF 2O5IE 2WB1I 1Y1WF 1ZYRE 4OIRE 2B63F 3RZOF 3HOXF 2E2JF 3M3YF 4OIQE 3HOVF 2PPBE 3S14F 4Q4ZE 1TWFF 3RZDF 3I4NF 5IPLE 4YFNE 1WCMF 5TMFE 4LK1E 3PO3F 5IYBF 2NVQF 3I4MF 4BXXF 2VUMF 2WAQK 4BY7F 4KN7E 4LK0E 4A3IF 4C2MF 5D4CE 3S1NF 2YU9F 4BY1F 4BBSF 5E17E 2Y0SI 3HOWF 3DXJE 1SMYE 4KN4E 1SFOF 4MEXE 2A68E 1I6VE 5M5WF 5IP9F 4OIOE 1I3QF 3CQZF 3GTJF 4C3HF 5FLMF 4G7HE 4MEYE 4XSXE 2JA7F 4C3JF 4XSZE 5TMCE 1IW7E 3GTKF 4KMUE 5M3FF 4Y52F 4A3EF 2NVXF 3S1QF 4GZYE 2JA8F 5IYCF 5E18E 5IP7F 3GTOF 3GTQF 3GTLF 1TWCF 4A3MF 2NVTF 4ZH4E 4JK1E 1R9TF 1I6HF 3PO2F 1I50F 3H0GF 3HOYF 2A6HE 5M5XF 2BE5E 3GTPF 4Q5SE 5C44F 1K83F 1HQME 4LJZE 4OIPE 4YFXE 4XLNE 3EQLE 1YNJK 4X6AF 4AYBK 2JA6F 3K7AF 3GTMF 3FKIF 3HKZK 5C3EF 3H3VG
chains in the Genus database with same CATH superfamily
5C3EE 2E2HF 3GTGF 3S1MF 4Y52E 4BBRF 4MQ9E 4C3IF 2NVXE 4YFKE 3S16F 2JA8E 5IYCE 2E2HE 3GTGE 5IP7E 3GTOE 3S1ME 4A3GF 3GTQE 3S16E 3GTLE 3HKZH 1TWCE 5M3MF 1Y1VF 4A3GE 2NVTE 1I6HE 5C4XF 1DZFA 1I50E 4LLGE 2KRXA 4A93F 3HOYE 2A69E 5C4XE 2R93F 3S1RF 4OINE 4A93E 4A3FF 5D4DE 2PMZK 4YG2E 3S2DF 4Y7NF 4A3LF 3HOUF 4G7OE 4X6AE 1TWGF 3S2DE 4Y7NE 2O5JE 3S2HF 2NVYF 3WODE 4XLPE 2PMZH 1YNNK 4G7ZE 4A3JF 2R7ZF 3S17F 4A3DF 1TWGE 1TWHF 5D4EE 2R92F 3M4OF 1TWAF 2R7ZE 3S17E 3FKIE 4A3DE 2Y0SH 4A3BF 3M4OE 4A3KF 4BBRE 2A6EE 4QIWH 4C3IE 2E2IF 3HOZF 5IYDF 4A3BE 1QKLA 2WB1H 5FJ8F 4A3CF 2JA5F 4A3KE 2CW0E 5C4JF 5BYHE 3S15F 5M3ME 1Y1VE 2WAQH 5M5YF 5C4JE 2O5IE 3S15E 2WB1I 1Y1WF 1ZYRE 4OIRE 5M5YE 2B63F 3RZOF 3S1RE 1Y1WE 2R93E 3HOXF 4A3FE 2E2JF 3M3YF 4OIQE 3HOVF 3HOXE 2PPBE 3S14F 1TWFF 4Q4ZE 3RZDF 4QIWK 3HOUE 3HOVE 4YFNE 3I4NF 1WCMF 5TMFE 4A3LE 5IPLE 4LK1E 1TWFE 3PO3F 3I4NE 5IYBF 2NVQF 2NVYE 3I4MF 4A3JE 1WCME 3S2HE 4BXXF 2VUMF 2WAQK 1TWHE 4KN7E 4LK0E 4BY7F 1TWAE 4A3IF 2NVQE 3PO3E 4BXXE 2R92E 4C2MF 5D4CE 3S1NF 2YU9F 4BY1F 4BBSF 5E17E 2Y0SI 3HOWF 4C2ME 3DXJE 3S1NE 3HOZE 1SMYE 2E2IE 4KN4E 5IYDE 1SFOF 4MEXE 4A3CE 2A68E 5FJ8E 2JA5E 1I6VE 5M5WF 5IP9F 4OIOE 1I3QF 3CQZF 3GTJF 4C3HF 5FLMF 4G7HE 4MEYE 5M5WE 1I3QE 4XSXE 2JA7F 4C3JF 5FLME 4XSZE 5TMCE 1IW7E 3GTKF 2B63E 4KMUE 5M3FF 3RZOE 4Y52F 4A3EF 1EIKA 4C3JE 2E2JE 2NVXF 3M3YE 3S1QF 4GZYE 2JA8F 3GTKE 4AYBH 5IYCF 5E18E 5IP7F 5M3FE 4A3EE 3GTOF 3S1QE 3GTQF 3GTLF 3S14E 1TWCF 3RZDE 4A3MF 2NVTF 4ZH4E 4JK1E 1R9TF 1I6HF 3PO2F 1I50F 3H0GF 3HOYF 5IYBE 2A6HE 4A3ME 1R9TE 5M5XF 3I4ME 3PO2E 2BE5E 3H0GE 4Q5SE 2VUME 3GTPF 4BY7E 5C44F 1K83F 4A3IE 1HQME 4LJZE 4OIPE 5M5XE 3GTPE 4YFXE 4XLNE 5C44E 1K83E 2YU9E 4BY1E 3EQLE 4BBSE 1YNJK 3HOWE 1SFOE 4X6AF 4AYBK 2JA6F 5IP9E 3CQZE 3GTJE 4C3HE 3H3VF 3K7AF 2JA6E 3GTMF 3FKIF 3HKZK 5C3EF 3H3VG 2JA7E 3K7AE 3GTME
chains in the Genus database with same CATH topology
2E2HF 3GTGF 3S1MF 4BBRF 4MQ9E 4C3IF 4YFKE 3S16F 4A3GF 5M3MF 1Y1VF 5C4XF 4LLGE 2KRXA 4A93F 2A69E 2R93F 3S1RF 4OINE 4A3FF 5D4DE 2PMZK 4YG2E 3S2DF 4Y7NF 4A3LF 3HOUF 4G7OE 1TWGF 2O5JE 3S2HF 3WODE 2NVYF 4XLPE 1YNNK 4G7ZE 4A3JF 2R7ZF 3S17F 4A3DF 1TWHF 5D4EE 2R92F 3M4OF 1TWAF 4A3BF 4A3KF 2A6EE 3HOZF 2E2IF 5IYDF 1QKLA 4A3CF 5FJ8F 2JA5F 2CW0E 5C4JF 5BYHE 3S15F 5M5YF 2O5IE 2WB1I 1Y1WF 1ZYRE 4OIRE 2B63F 3RZOF 3HOXF 2E2JF 3M3YF 4OIQE 3HOVF 2PPBE 3S14F 4Q4ZE 1TWFF 3RZDF 4QIWK 3I4NF 5IPLE 4YFNE 1WCMF 5TMFE 4LK1E 3PO3F 5IYBF 2NVQF 3I4MF 4BXXF 2VUMF 2WAQK 4BY7F 4KN7E 4LK0E 4A3IF 4C2MF 5D4CE 3S1NF 2YU9F 4BY1F 4BBSF 5E17E 2Y0SI 3HOWF 3DXJE 1SMYE 4KN4E 1SFOF 4MEXE 2A68E 1I6VE 5M5WF 5IP9F 4OIOE 1I3QF 3CQZF 3GTJF 4C3HF 5FLMF 4G7HE 4MEYE 4XSXE 2JA7F 4C3JF 4XSZE 5TMCE 1IW7E 3GTKF 4KMUE 5M3FF 4Y52F 4A3EF 2NVXF 3S1QF 4GZYE 2JA8F 5IYCF 5E18E 5IP7F 3GTOF 3GTQF 3GTLF 1TWCF 4A3MF 2NVTF 4ZH4E 4JK1E 1R9TF 1I6HF 3PO2F 1I50F 3H0GF 3HOYF 2A6HE 5M5XF 2BE5E 3GTPF 4Q5SE 5C44F 1K83F 1HQME 4LJZE 4OIPE 4YFXE 4XLNE 3EQLE 1YNJK 4X6AF 4AYBK 2JA6F 3K7AF 3GTMF 3FKIF 3HKZK 5C3EF 3H3VG
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2E2H F;  3GTG F;  3S1M F;  4BBR F;  4MQ9 E;  4C3I F;  4YFK E;  3S16 F;  4A3G F;  5M3M F;  1Y1V F;  5C4X F;  4LLG E;  4A93 F;  2A69 E;  2R93 F;  3S1R F;  4OIN E;  4A3F F;  5D4D E;  2PMZ K;  4YG2 E;  3S2D F;  4Y7N F;  4A3L F;  3HOU F;  4G7O E;  1TWG F;  2O5J E;  3S2H F;  3WOD E;  2NVY F;  4XLP E;  1YNN K;  4G7Z E;  4A3J F;  2R7Z F;  3S17 F;  4A3D F;  1TWH F;  5D4E E;  2R92 F;  3M4O F;  1TWA F;  4A3B F;  4A3K F;  2A6E E;  3HOZ F;  2E2I F;  5IYD F;  1QKL A;  4A3C F;  5FJ8 F;  2JA5 F;  2CW0 E;  5C4J F;  5BYH E;  3S15 F;  5M5Y F;  2O5I E;  2WB1 I;  1Y1W F;  1ZYR E;  4OIR E;  2B63 F;  3RZO F;  3HOX F;  2E2J F;  3M3Y F;  4OIQ E;  3HOV F;  2PPB E;  3S14 F;  4Q4Z E;  1TWF F;  3RZD F;  3I4N F;  5IPL E;  4YFN E;  1WCM F;  5TMF E;  4LK1 E;  3PO3 F;  5IYB F;  2NVQ F;  3I4M F;  4BXX F;  2VUM F;  2WAQ K;  4BY7 F;  4KN7 E;  4LK0 E;  4A3I F;  4C2M F;  5D4C E;  3S1N F;  2YU9 F;  4BY1 F;  4BBS F;  5E17 E;  2Y0S I;  3HOW F;  3DXJ E;  1SMY E;  4KN4 E;  1SFO F;  4MEX E;  2A68 E;  1I6V E;  5M5W F;  5IP9 F;  4OIO E;  1I3Q F;  3CQZ F;  3GTJ F;  4C3H F;  5FLM F;  4G7H E;  4MEY E;  4XSX E;  2JA7 F;  4C3J F;  4XSZ E;  5TMC E;  1IW7 E;  3GTK F;  4KMU E;  5M3F F;  4Y52 F;  4A3E F;  2NVX F;  3S1Q F;  4GZY E;  2JA8 F;  5IYC F;  5E18 E;  5IP7 F;  3GTO F;  3GTQ F;  3GTL F;  1TWC F;  4A3M F;  2NVT F;  4ZH4 E;  4JK1 E;  1R9T F;  1I6H F;  3PO2 F;  1I50 F;  3H0G F;  3HOY F;  2A6H E;  5M5X F;  2BE5 E;  3GTP F;  4Q5S E;  5C44 F;  1K83 F;  1HQM E;  4LJZ E;  4OIP E;  4YFX E;  4XLN E;  3EQL E;  1YNJ K;  4X6A F;  4AYB K;  2JA6 F;  3K7A F;  3GTM F;  3FKI F;  3HKZ K;  5C3E F;  3H3V G; 
#chains in the Genus database with same CATH topology
 5C3E E;  2E2H F;  3GTG F;  3S1M F;  4Y52 E;  4BBR F;  4MQ9 E;  4C3I F;  2NVX E;  4YFK E;  3S16 F;  2JA8 E;  5IYC E;  2E2H E;  3GTG E;  5IP7 E;  3GTO E;  3S1M E;  4A3G F;  3GTQ E;  3S16 E;  3GTL E;  3HKZ H;  1TWC E;  5M3M F;  1Y1V F;  4A3G E;  2NVT E;  1I6H E;  5C4X F;  1DZF A;  1I50 E;  4LLG E;  2KRX A;  4A93 F;  3HOY E;  2A69 E;  5C4X E;  2R93 F;  3S1R F;  4OIN E;  4A93 E;  4A3F F;  5D4D E;  2PMZ K;  4YG2 E;  3S2D F;  4Y7N F;  4A3L F;  3HOU F;  4G7O E;  4X6A E;  1TWG F;  3S2D E;  4Y7N E;  2O5J E;  3S2H F;  2NVY F;  3WOD E;  4XLP E;  2PMZ H;  1YNN K;  4G7Z E;  4A3J F;  2R7Z F;  3S17 F;  4A3D F;  1TWG E;  1TWH F;  5D4E E;  2R92 F;  3M4O F;  1TWA F;  2R7Z E;  3S17 E;  3FKI E;  4A3D E;  2Y0S H;  4A3B F;  3M4O E;  4A3K F;  4BBR E;  2A6E E;  4QIW H;  4C3I E;  2E2I F;  3HOZ F;  5IYD F;  4A3B E;  1QKL A;  2WB1 H;  5FJ8 F;  4A3C F;  2JA5 F;  4A3K E;  2CW0 E;  5C4J F;  5BYH E;  3S15 F;  5M3M E;  1Y1V E;  2WAQ H;  5M5Y F;  5C4J E;  2O5I E;  3S15 E;  2WB1 I;  1Y1W F;  1ZYR E;  4OIR E;  5M5Y E;  2B63 F;  3RZO F;  3S1R E;  1Y1W E;  2R93 E;  3HOX F;  4A3F E;  2E2J F;  3M3Y F;  4OIQ E;  3HOV F;  3HOX E;  2PPB E;  3S14 F;  1TWF F;  4Q4Z E;  3RZD F;  4QIW K;  3HOU E;  3HOV E;  4YFN E;  3I4N F;  1WCM F;  5TMF E;  4A3L E;  5IPL E;  4LK1 E;  1TWF E;  3PO3 F;  3I4N E;  5IYB F;  2NVQ F;  2NVY E;  3I4M F;  4A3J E;  1WCM E;  3S2H E;  4BXX F;  2VUM F;  2WAQ K;  1TWH E;  4KN7 E;  4LK0 E;  4BY7 F;  1TWA E;  4A3I F;  2NVQ E;  3PO3 E;  4BXX E;  2R92 E;  4C2M F;  5D4C E;  3S1N F;  2YU9 F;  4BY1 F;  4BBS F;  5E17 E;  2Y0S I;  3HOW F;  4C2M E;  3DXJ E;  3S1N E;  3HOZ E;  1SMY E;  2E2I E;  4KN4 E;  5IYD E;  1SFO F;  4MEX E;  4A3C E;  2A68 E;  5FJ8 E;  2JA5 E;  1I6V E;  5M5W F;  5IP9 F;  4OIO E;  1I3Q F;  3CQZ F;  3GTJ F;  4C3H F;  5FLM F;  4G7H E;  4MEY E;  5M5W E;  1I3Q E;  4XSX E;  2JA7 F;  4C3J F;  5FLM E;  4XSZ E;  5TMC E;  1IW7 E;  3GTK F;  2B63 E;  4KMU E;  5M3F F;  3RZO E;  4Y52 F;  4A3E F;  1EIK A;  4C3J E;  2E2J E;  2NVX F;  3M3Y E;  3S1Q F;  4GZY E;  2JA8 F;  3GTK E;  4AYB H;  5IYC F;  5E18 E;  5IP7 F;  5M3F E;  4A3E E;  3GTO F;  3S1Q E;  3GTQ F;  3GTL F;  3S14 E;  1TWC F;  3RZD E;  4A3M F;  2NVT F;  4ZH4 E;  4JK1 E;  1R9T F;  1I6H F;  3PO2 F;  1I50 F;  3H0G F;  3HOY F;  5IYB E;  2A6H E;  4A3M E;  1R9T E;  5M5X F;  3I4M E;  3PO2 E;  2BE5 E;  3H0G E;  4Q5S E;  2VUM E;  3GTP F;  4BY7 E;  5C44 F;  1K83 F;  4A3I E;  1HQM E;  4LJZ E;  4OIP E;  5M5X E;  3GTP E;  4YFX E;  4XLN E;  5C44 E;  1K83 E;  2YU9 E;  4BY1 E;  3EQL E;  4BBS E;  1YNJ K;  3HOW E;  1SFO E;  4X6A F;  4AYB K;  2JA6 F;  5IP9 E;  3CQZ E;  3GTJ E;  4C3H E;  3H3V F;  3K7A F;  2JA6 E;  3GTM F;  3FKI F;  3HKZ K;  5C3E F;  3H3V G;  2JA7 E;  3K7A E;  3GTM E; 
#chains in the Genus database with same CATH homology
 2E2H F;  3GTG F;  3S1M F;  4BBR F;  4MQ9 E;  4C3I F;  4YFK E;  3S16 F;  4A3G F;  5M3M F;  1Y1V F;  5C4X F;  4LLG E;  2KRX A;  4A93 F;  2A69 E;  2R93 F;  3S1R F;  4OIN E;  4A3F F;  5D4D E;  2PMZ K;  4YG2 E;  3S2D F;  4Y7N F;  4A3L F;  3HOU F;  4G7O E;  1TWG F;  2O5J E;  3S2H F;  3WOD E;  2NVY F;  4XLP E;  1YNN K;  4G7Z E;  4A3J F;  2R7Z F;  3S17 F;  4A3D F;  1TWH F;  5D4E E;  2R92 F;  3M4O F;  1TWA F;  4A3B F;  4A3K F;  2A6E E;  3HOZ F;  2E2I F;  5IYD F;  1QKL A;  4A3C F;  5FJ8 F;  2JA5 F;  2CW0 E;  5C4J F;  5BYH E;  3S15 F;  5M5Y F;  2O5I E;  2WB1 I;  1Y1W F;  1ZYR E;  4OIR E;  2B63 F;  3RZO F;  3HOX F;  2E2J F;  3M3Y F;  4OIQ E;  3HOV F;  2PPB E;  3S14 F;  4Q4Z E;  1TWF F;  3RZD F;  4QIW K;  3I4N F;  5IPL E;  4YFN E;  1WCM F;  5TMF E;  4LK1 E;  3PO3 F;  5IYB F;  2NVQ F;  3I4M F;  4BXX F;  2VUM F;  2WAQ K;  4BY7 F;  4KN7 E;  4LK0 E;  4A3I F;  4C2M F;  5D4C E;  3S1N F;  2YU9 F;  4BY1 F;  4BBS F;  5E17 E;  2Y0S I;  3HOW F;  3DXJ E;  1SMY E;  4KN4 E;  1SFO F;  4MEX E;  2A68 E;  1I6V E;  5M5W F;  5IP9 F;  4OIO E;  1I3Q F;  3CQZ F;  3GTJ F;  4C3H F;  5FLM F;  4G7H E;  4MEY E;  4XSX E;  2JA7 F;  4C3J F;  4XSZ E;  5TMC E;  1IW7 E;  3GTK F;  4KMU E;  5M3F F;  4Y52 F;  4A3E F;  2NVX F;  3S1Q F;  4GZY E;  2JA8 F;  5IYC F;  5E18 E;  5IP7 F;  3GTO F;  3GTQ F;  3GTL F;  1TWC F;  4A3M F;  2NVT F;  4ZH4 E;  4JK1 E;  1R9T F;  1I6H F;  3PO2 F;  1I50 F;  3H0G F;  3HOY F;  2A6H E;  5M5X F;  2BE5 E;  3GTP F;  4Q5S E;  5C44 F;  1K83 F;  1HQM E;  4LJZ E;  4OIP E;  4YFX E;  4XLN E;  3EQL E;  1YNJ K;  4X6A F;  4AYB K;  2JA6 F;  3K7A F;  3GTM F;  3FKI F;  3HKZ K;  5C3E F;  3H3V G; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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