1K8AK

Co-crystal structure of carbomycin a bound to the 50s ribosomal subunit of haloarcula marismortui
Total Genus 44
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
44
sequence length
142
structure length
142
Chain Sequence
AEFDADVIVDARDCIMGRVASQVAEQALDGETVAVVNAERAVITGREEQIVEKYEKRVDIGNDNGYFYPKRPDGIFKRTIRGMLPHKKQRGREAFESVRVYLGNPYDEDGEVLDGTSLDRLSNIKFVTLGEISETLGANKTW
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ribosome
molecule keywords 23S RRNA
publication title The structures of four macrolide antibiotics bound to the large ribosomal subunit.
pubmed doi rcsb
total genus 44
structure length 142
sequence length 142
ec nomenclature
pdb deposition date 2001-10-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
K PF00572 Ribosomal_L13 Ribosomal protein L13
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.1180.10 Alpha Beta Alpha-Beta Complex Ribosomal Protein L13p; Chain: A; Ribosomal protein L13 1k8aK00
3OW2I 2ZJPG 1YHQJ 1YJNJ 1Q86K 3CCLJ 1QVFI 1N8RK 1YITJ 3CCRJ 1Q81K 1Q7YK 1K9MK 3G4SJ 3CCQJ 3G6EJ 3I55J 3I56J 3CCMJ 1VQ9J 2QEXJ 3PIOG 1K73K 1W2BI 1J3AA 3CCUJ 3CC7J 1VQ6J 3CCSJ 2OTJJ 1VQLJ 3PIPG 3DLLG 2OTLJ 1KQSI 1KC8K 4IOCG 3G71J 3CPWI 3CD6J 3CCVJ 3CMEJ 1Q82K 1NJIK 1YI2J 4IO9G 1YIJJ 1M1KK 1K8AK 1VQ7J 1VQPJ 1S72J 2QA4J 3CC2J 1JJ2I 1VQKJ 1VQMJ 2ZJRG 3CCJJ 3CXCI 3J7YK 1YJ9J 3CC4J 2ZJQG 1VQ8J 3CCEJ 4V19N 1QVGI 1KD1K 1VQ4J 1VQOJ 1M90K 3CF5G 3CMAJ 1VQ5J 1VQNJ 4IOAG 1YJWJ
chains in the Genus database with same CATH superfamily
3OW2I 2ZJPG 1YHQJ 1YJNJ 1Q86K 3CCLJ 1QVFI 1N8RK 1YITJ 3CCRJ 1Q81K 1Q7YK 1K9MK 3G4SJ 3CCQJ 3G6EJ 3I55J 3I56J 3CCMJ 1VQ9J 2QEXJ 3PIOG 1K73K 1W2BI 1J3AA 3CCUJ 3CC7J 1VQ6J 3CCSJ 2OTJJ 1VQLJ 3PIPG 3DLLG 2OTLJ 1KQSI 1KC8K 4IOCG 3G71J 3CPWI 3CD6J 3CCVJ 3CMEJ 1Q82K 1NJIK 1YI2J 4IO9G 1YIJJ 1M1KK 1K8AK 1VQ7J 1VQPJ 1S72J 2QA4J 3CC2J 1JJ2I 1VQKJ 1VQMJ 2ZJRG 3CCJJ 3CXCI 3J7YK 1YJ9J 3CC4J 2ZJQG 1VQ8J 3CCEJ 4V19N 1QVGI 1KD1K 1VQ4J 1VQOJ 1M90K 3CF5G 3CMAJ 1VQ5J 1VQNJ 4IOAG 1YJWJ
chains in the Genus database with same CATH topology
3OW2I 2ZJPG 1YHQJ 1YJNJ 1Q86K 3CCLJ 1QVFI 1N8RK 1YITJ 3CCRJ 1Q81K 1Q7YK 1K9MK 3G4SJ 3CCQJ 3G6EJ 3I55J 3I56J 3CCMJ 1VQ9J 2QEXJ 3PIOG 1K73K 1W2BI 1J3AA 3CCUJ 3CC7J 1VQ6J 3CCSJ 2OTJJ 1VQLJ 3PIPG 3DLLG 2OTLJ 1KQSI 1KC8K 4IOCG 3G71J 3CPWI 3CD6J 3CCVJ 3CMEJ 1Q82K 1NJIK 1YI2J 4IO9G 1YIJJ 1M1KK 1K8AK 1VQ7J 1VQPJ 1S72J 2QA4J 3CC2J 1JJ2I 1VQKJ 1VQMJ 2ZJRG 3CCJJ 3CXCI 3J7YK 1YJ9J 3CC4J 2ZJQG 1VQ8J 3CCEJ 4V19N 1QVGI 1KD1K 1VQ4J 1VQOJ 1M90K 3CF5G 3CMAJ 1VQ5J 1VQNJ 4IOAG 1YJWJ
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3OW2 I;  2ZJP G;  1YHQ J;  1YJN J;  1Q86 K;  3CCL J;  1QVF I;  1N8R K;  1YIT J;  3CCR J;  1Q81 K;  1Q7Y K;  1K9M K;  3G4S J;  3CCQ J;  3G6E J;  3I55 J;  3I56 J;  3CCM J;  1VQ9 J;  2QEX J;  3PIO G;  1K73 K;  1W2B I;  1J3A A;  3CCU J;  3CC7 J;  1VQ6 J;  3CCS J;  2OTJ J;  1VQL J;  3PIP G;  3DLL G;  2OTL J;  1KQS I;  1KC8 K;  4IOC G;  3G71 J;  3CPW I;  3CD6 J;  3CCV J;  3CME J;  1Q82 K;  1NJI K;  1YI2 J;  4IO9 G;  1YIJ J;  1M1K K;  1K8A K;  1VQ7 J;  1VQP J;  1S72 J;  2QA4 J;  3CC2 J;  1JJ2 I;  1VQK J;  1VQM J;  2ZJR G;  3CCJ J;  3CXC I;  3J7Y K;  1YJ9 J;  3CC4 J;  2ZJQ G;  1VQ8 J;  3CCE J;  4V19 N;  1QVG I;  1KD1 K;  1VQ4 J;  1VQO J;  1M90 K;  3CF5 G;  3CMA J;  1VQ5 J;  1VQN J;  4IOA G;  1YJW J; 
#chains in the Genus database with same CATH topology
 3OW2 I;  2ZJP G;  1YHQ J;  1YJN J;  1Q86 K;  3CCL J;  1QVF I;  1N8R K;  1YIT J;  3CCR J;  1Q81 K;  1Q7Y K;  1K9M K;  3G4S J;  3CCQ J;  3G6E J;  3I55 J;  3I56 J;  3CCM J;  1VQ9 J;  2QEX J;  3PIO G;  1K73 K;  1W2B I;  1J3A A;  3CCU J;  3CC7 J;  1VQ6 J;  3CCS J;  2OTJ J;  1VQL J;  3PIP G;  3DLL G;  2OTL J;  1KQS I;  1KC8 K;  4IOC G;  3G71 J;  3CPW I;  3CD6 J;  3CCV J;  3CME J;  1Q82 K;  1NJI K;  1YI2 J;  4IO9 G;  1YIJ J;  1M1K K;  1K8A K;  1VQ7 J;  1VQP J;  1S72 J;  2QA4 J;  3CC2 J;  1JJ2 I;  1VQK J;  1VQM J;  2ZJR G;  3CCJ J;  3CXC I;  3J7Y K;  1YJ9 J;  3CC4 J;  2ZJQ G;  1VQ8 J;  3CCE J;  4V19 N;  1QVG I;  1KD1 K;  1VQ4 J;  1VQO J;  1M90 K;  3CF5 G;  3CMA J;  1VQ5 J;  1VQN J;  4IOA G;  1YJW J; 
#chains in the Genus database with same CATH homology
 3OW2 I;  2ZJP G;  1YHQ J;  1YJN J;  1Q86 K;  3CCL J;  1QVF I;  1N8R K;  1YIT J;  3CCR J;  1Q81 K;  1Q7Y K;  1K9M K;  3G4S J;  3CCQ J;  3G6E J;  3I55 J;  3I56 J;  3CCM J;  1VQ9 J;  2QEX J;  3PIO G;  1K73 K;  1W2B I;  1J3A A;  3CCU J;  3CC7 J;  1VQ6 J;  3CCS J;  2OTJ J;  1VQL J;  3PIP G;  3DLL G;  2OTL J;  1KQS I;  1KC8 K;  4IOC G;  3G71 J;  3CPW I;  3CD6 J;  3CCV J;  3CME J;  1Q82 K;  1NJI K;  1YI2 J;  4IO9 G;  1YIJ J;  1M1K K;  1K8A K;  1VQ7 J;  1VQP J;  1S72 J;  2QA4 J;  3CC2 J;  1JJ2 I;  1VQK J;  1VQM J;  2ZJR G;  3CCJ J;  3CXC I;  3J7Y K;  1YJ9 J;  3CC4 J;  2ZJQ G;  1VQ8 J;  3CCE J;  4V19 N;  1QVG I;  1KD1 K;  1VQ4 J;  1VQO J;  1M90 K;  3CF5 G;  3CMA J;  1VQ5 J;  1VQN J;  4IOA G;  1YJW J; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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