1K9CA

Solution structure of calreticulin p-domain subdomain (residues 189-261)
Total Genus 2
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
2
sequence length
74
structure length
74
Chain Sequence
SKKIKDPDAAKPEDWDERAKIDDPTDSKPEDWDKPEHIPDPDAKKPEDWDEEMDGEWEPPVIQNPEYKGEWKPR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Metal transport
molecule keywords CALRETICULIN
publication title NMR Structures of 36 and 73-residue Fragments of the Calreticulin P-domain
pubmed doi rcsb
source organism Rattus norvegicus
total genus 2
structure length 74
sequence length 74
ec nomenclature
pdb deposition date 2001-10-29
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.250.10 Mainly Beta Ribbon Calnexin lumenal domain, non-globular proline-rich hairpin domain Calreticulin/calnexin, P domain 1k9cA00
3RG0A 1JHNA 1K9CA 1HHNA
chains in the Genus database with same CATH superfamily
3RG0A 1JHNA 1K9CA 1HHNA
chains in the Genus database with same CATH topology
3RG0A 1JHNA 1K9CA 1HHNA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3RG0 A;  1JHN A;  1K9C A;  1HHN A; 
#chains in the Genus database with same CATH topology
 3RG0 A;  1JHN A;  1K9C A;  1HHN A; 
#chains in the Genus database with same CATH homology
 3RG0 A;  1JHN A;  1K9C A;  1HHN A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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