1KC8K

Co-crystal structure of blasticidin s bound to the 50s ribosomal subunit
Total Genus 44
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
44
sequence length
142
structure length
142
Chain Sequence
AEFDADVIVDARDCIMGRVASQVAEQALDGETVAVVNAERAVITGREEQIVEKYEKRVDIGNDNGYFYPKRPDGIFKRTIRGMLPHKKQRGREAFESVRVYLGNPYDEDGEVLDGTSLDRLSNIKFVTLGEISETLGANKTW
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ribosome
molecule keywords 23S RRNA
publication title Structures of Five Antibiotics Bound at the Peptidyl Transferase Center of the Large Ribosomal Subunit
pubmed doi rcsb
total genus 44
structure length 142
sequence length 142
ec nomenclature
pdb deposition date 2001-11-07

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
K PF00572 Ribosomal_L13 Ribosomal protein L13
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.1180.10 Alpha Beta Alpha-Beta Complex Ribosomal Protein L13p; Chain: A; Ribosomal protein L13 1kc8K00
4IOAG 4IOCG 3PIPG 1VQNJ 3CMEJ 2OTLJ 1J3AA 1K9MK 1K8AK 3J7YK 3CCRJ 1YHQJ 3CCUJ 3DLLG 1M1KK 1Q82K 3CXCI 1KQSI 2ZJPG 1S72J 3CC4J 3CCVJ 1YITJ 3G6EJ 1YJNJ 1W2BI 1VQKJ 3CC2J 3CC7J 1KC8K 1YI2J 1QVGI 1YJ9J 2ZJQG 1Q86K 3CMAJ 4V19N 3CD6J 3G71J 3G4SJ 3CCMJ 1VQMJ 1Q81K 3CCSJ 3I55J 1M90K 1YJWJ 3CCQJ 3CCLJ 1JJ2I 1VQPJ 1VQOJ 2OTJJ 1YIJJ 1VQLJ 2ZJRG 2QA4J 3I56J 1K73K 1VQ8J 3CCJJ 1VQ4J 3PIOG 1VQ9J 1NJIK 1QVFI 1VQ7J 4IO9G 1VQ6J 2QEXJ 1N8RK 1KD1K 3CF5G 1Q7YK 3CPWI 3OW2I 1VQ5J 3CCEJ
chains in the Genus database with same CATH superfamily
4IOAG 4IOCG 3PIPG 1VQNJ 3CMEJ 2OTLJ 1J3AA 1K9MK 1K8AK 3J7YK 3CCRJ 1YHQJ 3CCUJ 3DLLG 1M1KK 1Q82K 3CXCI 1KQSI 2ZJPG 1S72J 3CC4J 3CCVJ 1YITJ 3G6EJ 1YJNJ 1W2BI 1VQKJ 3CC2J 3CC7J 1KC8K 1YI2J 1QVGI 1YJ9J 2ZJQG 1Q86K 3CMAJ 4V19N 3CD6J 3G71J 3G4SJ 3CCMJ 1VQMJ 1Q81K 3CCSJ 3I55J 1M90K 1YJWJ 3CCQJ 3CCLJ 1JJ2I 1VQPJ 1VQOJ 2OTJJ 1YIJJ 1VQLJ 2ZJRG 2QA4J 3I56J 1K73K 1VQ8J 3CCJJ 1VQ4J 3PIOG 1VQ9J 1NJIK 1QVFI 1VQ7J 4IO9G 1VQ6J 2QEXJ 1N8RK 1KD1K 3CF5G 1Q7YK 3CPWI 3OW2I 1VQ5J 3CCEJ
chains in the Genus database with same CATH topology
4IOAG 4IOCG 3PIPG 1VQNJ 3CMEJ 2OTLJ 1J3AA 1K9MK 1K8AK 3J7YK 3CCRJ 1YHQJ 3CCUJ 3DLLG 1M1KK 1Q82K 3CXCI 1KQSI 2ZJPG 1S72J 3CC4J 3CCVJ 1YITJ 3G6EJ 1YJNJ 1W2BI 1VQKJ 3CC2J 3CC7J 1KC8K 1YI2J 1QVGI 1YJ9J 2ZJQG 1Q86K 3CMAJ 4V19N 3CD6J 3G71J 3G4SJ 3CCMJ 1VQMJ 1Q81K 3CCSJ 3I55J 1M90K 1YJWJ 3CCQJ 3CCLJ 1JJ2I 1VQPJ 1VQOJ 2OTJJ 1YIJJ 1VQLJ 2ZJRG 2QA4J 3I56J 1K73K 1VQ8J 3CCJJ 1VQ4J 3PIOG 1VQ9J 1NJIK 1QVFI 1VQ7J 4IO9G 1VQ6J 2QEXJ 1N8RK 1KD1K 3CF5G 1Q7YK 3CPWI 3OW2I 1VQ5J 3CCEJ
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4IOA G;  4IOC G;  3PIP G;  1VQN J;  3CME J;  2OTL J;  1J3A A;  1K9M K;  1K8A K;  3J7Y K;  3CCR J;  1YHQ J;  3CCU J;  3DLL G;  1M1K K;  1Q82 K;  3CXC I;  1KQS I;  2ZJP G;  1S72 J;  3CC4 J;  3CCV J;  1YIT J;  3G6E J;  1YJN J;  1W2B I;  1VQK J;  3CC2 J;  3CC7 J;  1KC8 K;  1YI2 J;  1QVG I;  1YJ9 J;  2ZJQ G;  1Q86 K;  3CMA J;  4V19 N;  3CD6 J;  3G71 J;  3G4S J;  3CCM J;  1VQM J;  1Q81 K;  3CCS J;  3I55 J;  1M90 K;  1YJW J;  3CCQ J;  3CCL J;  1JJ2 I;  1VQP J;  1VQO J;  2OTJ J;  1YIJ J;  1VQL J;  2ZJR G;  2QA4 J;  3I56 J;  1K73 K;  1VQ8 J;  3CCJ J;  1VQ4 J;  3PIO G;  1VQ9 J;  1NJI K;  1QVF I;  1VQ7 J;  4IO9 G;  1VQ6 J;  2QEX J;  1N8R K;  1KD1 K;  3CF5 G;  1Q7Y K;  3CPW I;  3OW2 I;  1VQ5 J;  3CCE J; 
#chains in the Genus database with same CATH topology
 4IOA G;  4IOC G;  3PIP G;  1VQN J;  3CME J;  2OTL J;  1J3A A;  1K9M K;  1K8A K;  3J7Y K;  3CCR J;  1YHQ J;  3CCU J;  3DLL G;  1M1K K;  1Q82 K;  3CXC I;  1KQS I;  2ZJP G;  1S72 J;  3CC4 J;  3CCV J;  1YIT J;  3G6E J;  1YJN J;  1W2B I;  1VQK J;  3CC2 J;  3CC7 J;  1KC8 K;  1YI2 J;  1QVG I;  1YJ9 J;  2ZJQ G;  1Q86 K;  3CMA J;  4V19 N;  3CD6 J;  3G71 J;  3G4S J;  3CCM J;  1VQM J;  1Q81 K;  3CCS J;  3I55 J;  1M90 K;  1YJW J;  3CCQ J;  3CCL J;  1JJ2 I;  1VQP J;  1VQO J;  2OTJ J;  1YIJ J;  1VQL J;  2ZJR G;  2QA4 J;  3I56 J;  1K73 K;  1VQ8 J;  3CCJ J;  1VQ4 J;  3PIO G;  1VQ9 J;  1NJI K;  1QVF I;  1VQ7 J;  4IO9 G;  1VQ6 J;  2QEX J;  1N8R K;  1KD1 K;  3CF5 G;  1Q7Y K;  3CPW I;  3OW2 I;  1VQ5 J;  3CCE J; 
#chains in the Genus database with same CATH homology
 4IOA G;  4IOC G;  3PIP G;  1VQN J;  3CME J;  2OTL J;  1J3A A;  1K9M K;  1K8A K;  3J7Y K;  3CCR J;  1YHQ J;  3CCU J;  3DLL G;  1M1K K;  1Q82 K;  3CXC I;  1KQS I;  2ZJP G;  1S72 J;  3CC4 J;  3CCV J;  1YIT J;  3G6E J;  1YJN J;  1W2B I;  1VQK J;  3CC2 J;  3CC7 J;  1KC8 K;  1YI2 J;  1QVG I;  1YJ9 J;  2ZJQ G;  1Q86 K;  3CMA J;  4V19 N;  3CD6 J;  3G71 J;  3G4S J;  3CCM J;  1VQM J;  1Q81 K;  3CCS J;  3I55 J;  1M90 K;  1YJW J;  3CCQ J;  3CCL J;  1JJ2 I;  1VQP J;  1VQO J;  2OTJ J;  1YIJ J;  1VQL J;  2ZJR G;  2QA4 J;  3I56 J;  1K73 K;  1VQ8 J;  3CCJ J;  1VQ4 J;  3PIO G;  1VQ9 J;  1NJI K;  1QVF I;  1VQ7 J;  4IO9 G;  1VQ6 J;  2QEX J;  1N8R K;  1KD1 K;  3CF5 G;  1Q7Y K;  3CPW I;  3OW2 I;  1VQ5 J;  3CCE J; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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