1KD1J

Co-crystal structure of spiramycin bound to the 50s ribosomal subunit of haloarcula marismortui
Total Genus 29
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
29
sequence length
167
structure length
156
Chain Sequence
KPGAMYRNSSKPAYTRREYISGIPGKKIAQFDMGNNGAGPTYPAQVELVVEKPVQIRHNALEAARVAANRYVQNSGAAANYKFRIRKFPFHVIRENKDGMRAPFGKPVGTAARVHGANHIFIAWVNPDPNVEEAWRRAKMKVTPTINIDSSPAGNA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ribosome
molecule keywords 23S RRNA
publication title The structures of four macrolide antibiotics bound to the large ribosomal subunit.
pubmed doi rcsb
total genus 29
structure length 156
sequence length 167
ec nomenclature
pdb deposition date 2001-11-12
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.1170.10 Alpha Beta Alpha-Beta Complex Aldehyde Oxidoreductase; domain 3 Ribosomal protein L10e/L16 1kd1J00
1YI2H 3DLLJ 3CPWH 3CCSH 1K73J 5JVHJ 2ZJRJ 1W2BH 5HL7J 4IOAJ 1N8RJ 1VQ9H 3CF5J 3PIOJ 1JJ2H 1VQMH 1YJWH 1Q86J 3CCJH 1YJNH 4U67J 2ZJPJ 4WFBJ 1VQKH 1S72H 4WFNJ 1VQPH 1NJIJ 3G71H 1VQ8H 1QVGH 3CC2H 4UY8M 5GAGN 5GAHN 3CMEH 1YIJH 3PIPJ 1KD1J 4IO9J 1VQNH 4WCEJ 3I55H 5GAEN 2ZJQJ 3CC7H 5GADN 3CMAH 5H1SO 2QA4H 5DM7J 1YHQH 5MLCO 4WFAJ 1VQLH 3CCQH 1VQ6H 5AN9F 4WF9J 1Q81J 1VQ4H 3CD6H 1YITH 1KC8J 3CCLH 2OTJH 2PA2A 1YJ9H 1KQSH 5DM6J 1VQ7H 1VQ5H 3CCRH 1Q82J 1K8AJ 3CCUH 1M90J 3CXCH 3G4SH 1M1KJ 3CC4H 3CCVH 1QVFH 3CCEH 3OW2H 4IOCJ 3I56H 1Q7YJ 3G6EH 3CCMH 1WKIA 2OTLH 1VQOH 3J7ZM 2QEXH 1Y69K 1K9MJ 5JVGJ
chains in the Genus database with same CATH superfamily
2W3SB 1YI2H 3DLLJ 3CPWH 4USAA 2I14A 1YTEA 5AYZA 1N5WB 3CCSH 1BRWA 5JVHJ 1K73J 1QPOA 2ZJRJ 1W2BH 5HL7J 2TPTA 1SIJA 3ETRC 2W3RB 4EADA 1N8RJ 4IOAJ 1V97A 1VQ9H 3CF5J 3PIOJ 1JJ2H 1VQMH 3NVYC 1YJWH 4X46A 1NVIE 2QIEA 1FO4A 4LHMA 4AP8A 4C7YA 1Q86J 5HULA 3CCJH 1YJNH 4U67J 1FIQC 1VLBA 2ZJPJ 4WFBJ 1VQKH 3WNZA 4GA5A 3FC4A 1S72H 1DGJA 2OMDA 1AZYA 4WFNJ 1VQPH 1JRPB 2DSJA 3AM9A 5MPOC 1NJIJ 4C80A 2B7PA 3G71H 1QPRA 3C2FA 1QVGH 1VQ8H 3CC2H 4UY8M 1UOUA 1JROB 5GAGN 3EUB4 5GAHN 1X1OA 2W54B 3CMEH 1YIJH 4YYYA 3SR6C 3PIPJ 5HUPA 1ZXIB 1KD1J 4IO9J 1VQNH 1O4UA 1QAPA 1QPQA 4WCEJ 2W55B 5EP8A 5GAEN 3I55H 2ZJQJ 3CC7H 2B7NA 5GADN 5H1SO 3CMAH 2QA4H 5DM7J 1N60B 3C2EA 5EY3A 1YHQH 3TQVA 1N61B 1WYGA 4US8A 2B7QA 5MLCO 1RM6A 3RPFA 4WFAJ 1FM0E 1VQLH 3CCQH 1NVJA 1VQ6H 3GNNA 5AN9F 3L0GA 4GA4A 4WF9J 1Q81J 1VQ4H 3CD6H 3PAJA 1SB3A 1YITH 1KC8J 3CCLH 2OTJH 2Q5WE 2PA2A 4KWVA 1YJ9H 5AYYA 3AMZA 2I1OA 4YEKA 1KQSH 1FFVB 1YTDA 3NVZC 3H5QA 4GA6A 5DM6J 1VQ7H 1VQ5H 1N63B 3CCRH 3WO1A 1Q82J 3CCUH 1K8AJ 1FMAE 3L4PA 1M90J 4C7ZA 3VMMA 5HUOA 3CXCH 3G4SH 1M1KJ 1VDVA 3AN1A 4ZOHA 3FAHA 3CC4H 3NS1C 1N62B 3NRZC 1OTPA 3CCVH 1QVFH 2J0FA 3C2OA 4I9AA 2WK5A 3BIIE 3CCEH 3WO0A 3B9JC 3OW2H 3NVWC 3C2RA 2WP4A 4KWWA 4IOCJ 3I56H 1Q7YJ 3G6EH 2E3TA 3CCMH 1WKIA 2OTLH 1FFUB 1VQOH 3J7ZM 1YTKA 4EAFA 2QEXH 4US9A 4XR5A 1QPNA 3NVVC 1Y69K 1K9MJ 1N5XA 2JBMA 3C2VA 5AYXA 5JVGJ 2WK6A
chains in the Genus database with same CATH topology
1YI2H 3DLLJ 3CPWH 3CCSH 1K73J 5JVHJ 2ZJRJ 1W2BH 5HL7J 4IOAJ 1N8RJ 1VQ9H 3CF5J 3PIOJ 1JJ2H 1VQMH 1YJWH 1Q86J 3CCJH 1YJNH 4U67J 2ZJPJ 4WFBJ 1VQKH 1S72H 4WFNJ 1VQPH 1NJIJ 3G71H 1VQ8H 1QVGH 3CC2H 4UY8M 5GAGN 5GAHN 3CMEH 1YIJH 3PIPJ 1KD1J 4IO9J 1VQNH 4WCEJ 3I55H 5GAEN 2ZJQJ 3CC7H 5GADN 3CMAH 5H1SO 2QA4H 5DM7J 1YHQH 5MLCO 4WFAJ 1VQLH 3CCQH 1VQ6H 5AN9F 4WF9J 1Q81J 1VQ4H 3CD6H 1YITH 1KC8J 3CCLH 2OTJH 2PA2A 1YJ9H 1KQSH 5DM6J 1VQ7H 1VQ5H 3CCRH 1Q82J 1K8AJ 3CCUH 1M90J 3CXCH 3G4SH 1M1KJ 3CC4H 3CCVH 1QVFH 3CCEH 3OW2H 4IOCJ 3I56H 1Q7YJ 3G6EH 3CCMH 1WKIA 2OTLH 1VQOH 3J7ZM 2QEXH 1Y69K 1K9MJ 5JVGJ
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1YI2 H;  3DLL J;  3CPW H;  3CCS H;  1K73 J;  5JVH J;  2ZJR J;  1W2B H;  5HL7 J;  4IOA J;  1N8R J;  1VQ9 H;  3CF5 J;  3PIO J;  1JJ2 H;  1VQM H;  1YJW H;  1Q86 J;  3CCJ H;  1YJN H;  4U67 J;  2ZJP J;  4WFB J;  1VQK H;  1S72 H;  4WFN J;  1VQP H;  1NJI J;  3G71 H;  1VQ8 H;  1QVG H;  3CC2 H;  4UY8 M;  5GAG N;  5GAH N;  3CME H;  1YIJ H;  3PIP J;  1KD1 J;  4IO9 J;  1VQN H;  4WCE J;  3I55 H;  5GAE N;  2ZJQ J;  3CC7 H;  5GAD N;  3CMA H;  5H1S O;  2QA4 H;  5DM7 J;  1YHQ H;  5MLC O;  4WFA J;  1VQL H;  3CCQ H;  1VQ6 H;  5AN9 F;  4WF9 J;  1Q81 J;  1VQ4 H;  3CD6 H;  1YIT H;  1KC8 J;  3CCL H;  2OTJ H;  2PA2 A;  1YJ9 H;  1KQS H;  5DM6 J;  1VQ7 H;  1VQ5 H;  3CCR H;  1Q82 J;  1K8A J;  3CCU H;  1M90 J;  3CXC H;  3G4S H;  1M1K J;  3CC4 H;  3CCV H;  1QVF H;  3CCE H;  3OW2 H;  4IOC J;  3I56 H;  1Q7Y J;  3G6E H;  3CCM H;  1WKI A;  2OTL H;  1VQO H;  3J7Z M;  2QEX H;  1Y69 K;  1K9M J;  5JVG J; 
#chains in the Genus database with same CATH topology
 2W3S B;  1YI2 H;  3DLL J;  3CPW H;  4USA A;  2I14 A;  1YTE A;  5AYZ A;  1N5W B;  3CCS H;  1BRW A;  5JVH J;  1K73 J;  1QPO A;  2ZJR J;  1W2B H;  5HL7 J;  2TPT A;  1SIJ A;  3ETR C;  2W3R B;  4EAD A;  1N8R J;  4IOA J;  1V97 A;  1VQ9 H;  3CF5 J;  3PIO J;  1JJ2 H;  1VQM H;  3NVY C;  1YJW H;  4X46 A;  1NVI E;  2QIE A;  1FO4 A;  4LHM A;  4AP8 A;  4C7Y A;  1Q86 J;  5HUL A;  3CCJ H;  1YJN H;  4U67 J;  1FIQ C;  1VLB A;  2ZJP J;  4WFB J;  1VQK H;  3WNZ A;  4GA5 A;  3FC4 A;  1S72 H;  1DGJ A;  2OMD A;  1AZY A;  4WFN J;  1VQP H;  1JRP B;  2DSJ A;  3AM9 A;  5MPO C;  1NJI J;  4C80 A;  2B7P A;  3G71 H;  1QPR A;  3C2F A;  1QVG H;  1VQ8 H;  3CC2 H;  4UY8 M;  1UOU A;  1JRO B;  5GAG N;  3EUB 4;  5GAH N;  1X1O A;  2W54 B;  3CME H;  1YIJ H;  4YYY A;  3SR6 C;  3PIP J;  5HUP A;  1ZXI B;  1KD1 J;  4IO9 J;  1VQN H;  1O4U A;  1QAP A;  1QPQ A;  4WCE J;  2W55 B;  5EP8 A;  5GAE N;  3I55 H;  2ZJQ J;  3CC7 H;  2B7N A;  5GAD N;  5H1S O;  3CMA H;  2QA4 H;  5DM7 J;  1N60 B;  3C2E A;  5EY3 A;  1YHQ H;  3TQV A;  1N61 B;  1WYG A;  4US8 A;  2B7Q A;  5MLC O;  1RM6 A;  3RPF A;  4WFA J;  1FM0 E;  1VQL H;  3CCQ H;  1NVJ A;  1VQ6 H;  3GNN A;  5AN9 F;  3L0G A;  4GA4 A;  4WF9 J;  1Q81 J;  1VQ4 H;  3CD6 H;  3PAJ A;  1SB3 A;  1YIT H;  1KC8 J;  3CCL H;  2OTJ H;  2Q5W E;  2PA2 A;  4KWV A;  1YJ9 H;  5AYY A;  3AMZ A;  2I1O A;  4YEK A;  1KQS H;  1FFV B;  1YTD A;  3NVZ C;  3H5Q A;  4GA6 A;  5DM6 J;  1VQ7 H;  1VQ5 H;  1N63 B;  3CCR H;  3WO1 A;  1Q82 J;  3CCU H;  1K8A J;  1FMA E;  3L4P A;  1M90 J;  4C7Z A;  3VMM A;  5HUO A;  3CXC H;  3G4S H;  1M1K J;  1VDV A;  3AN1 A;  4ZOH A;  3FAH A;  3CC4 H;  3NS1 C;  1N62 B;  3NRZ C;  1OTP A;  3CCV H;  1QVF H;  2J0F A;  3C2O A;  4I9A A;  2WK5 A;  3BII E;  3CCE H;  3WO0 A;  3B9J C;  3OW2 H;  3NVW C;  3C2R A;  2WP4 A;  4KWW A;  4IOC J;  3I56 H;  1Q7Y J;  3G6E H;  2E3T A;  3CCM H;  1WKI A;  2OTL H;  1FFU B;  1VQO H;  3J7Z M;  1YTK A;  4EAF A;  2QEX H;  4US9 A;  4XR5 A;  1QPN A;  3NVV C;  1Y69 K;  1K9M J;  1N5X A;  2JBM A;  3C2V A;  5AYX A;  5JVG J;  2WK6 A; 
#chains in the Genus database with same CATH homology
 1YI2 H;  3DLL J;  3CPW H;  3CCS H;  1K73 J;  5JVH J;  2ZJR J;  1W2B H;  5HL7 J;  4IOA J;  1N8R J;  1VQ9 H;  3CF5 J;  3PIO J;  1JJ2 H;  1VQM H;  1YJW H;  1Q86 J;  3CCJ H;  1YJN H;  4U67 J;  2ZJP J;  4WFB J;  1VQK H;  1S72 H;  4WFN J;  1VQP H;  1NJI J;  3G71 H;  1VQ8 H;  1QVG H;  3CC2 H;  4UY8 M;  5GAG N;  5GAH N;  3CME H;  1YIJ H;  3PIP J;  1KD1 J;  4IO9 J;  1VQN H;  4WCE J;  3I55 H;  5GAE N;  2ZJQ J;  3CC7 H;  5GAD N;  3CMA H;  5H1S O;  2QA4 H;  5DM7 J;  1YHQ H;  5MLC O;  4WFA J;  1VQL H;  3CCQ H;  1VQ6 H;  5AN9 F;  4WF9 J;  1Q81 J;  1VQ4 H;  3CD6 H;  1YIT H;  1KC8 J;  3CCL H;  2OTJ H;  2PA2 A;  1YJ9 H;  1KQS H;  5DM6 J;  1VQ7 H;  1VQ5 H;  3CCR H;  1Q82 J;  1K8A J;  3CCU H;  1M90 J;  3CXC H;  3G4S H;  1M1K J;  3CC4 H;  3CCV H;  1QVF H;  3CCE H;  3OW2 H;  4IOC J;  3I56 H;  1Q7Y J;  3G6E H;  3CCM H;  1WKI A;  2OTL H;  1VQO H;  3J7Z M;  2QEX H;  1Y69 K;  1K9M J;  5JVG J; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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