1KD1L

Co-crystal structure of spiramycin bound to the 50s ribosomal subunit of haloarcula marismortui
Total Genus 28
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
28
sequence length
132
structure length
132
Chain Sequence
MEALGADVTQGLEKGSLITCADNTGARELKVISVHGYSGTKNRHPKAGLGDKITVSVTKGTPEMRRQVLEAVVVRQRKPIRRPDGTRVKFEDNAAVIVDENEDPRGTELKGPIAREVAQRFGSVASAATMIV
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ribosome
molecule keywords 23S RRNA
publication title The structures of four macrolide antibiotics bound to the large ribosomal subunit.
pubmed doi rcsb
total genus 28
structure length 132
sequence length 132
ec nomenclature
pdb deposition date 2001-11-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
L PF00238 Ribosomal_L14 Ribosomal protein L14p/L23e
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.150.20 Mainly Beta Beta Barrel Ribosomal Protein L14 Ribosomal protein L14 1kd1L00
3I56K 3CPWJ 3G6EK 3CCJK 3CCSK 1VQ4K 3CC2K 4UY8K 1S72K 3G71K 3CC7K 3J7ZK 1Q7YL 1VQKK 1M90L 1Q86L 3CCRK 1NJIL 1YIJK 3CCLK 4WFBH 4WFNH 1M1KL 3DLLH 1YI2K 2ZJRH 1YJNK 4WFAH 1KC8L 1VQMK 1YJWK 2ZJQH 1K9ML 2OTLK 1KQSJ 1YJ9K 5JVHH 3CCUK 5GADL 5HL7H 3G4SK 4IO9H 1Q82L 4WCEH 2QEXK 3OW2J 1JJ2J 5GAEL 1WHIA 1KD1L 1VQPK 1VQ6K 3CF5H 3CCMK 1YHQK 2QA4K 1VQ7K 5MLCM 4IOCH 1N8RL 3I55K 1K8AL 2ZJPH 5GAGL 3CD6K 4IOAH 3PIPH 1VQOK 1VQNK 4V19O 3CCVK 3CC4K 5DM6H 1QVGJ 5H1SM 1VQLK 5AN9E 1W2BJ 1QVFJ 3J7YL 4WF9H 5GAHL 1VQ5K 3CXCJ 2OTJK 1K73L 3CMAK 5JVGH 3PIOH 4U67H 3CMEK 1Q81L 1YITK 3CCEK 1VQ9K 1VQ8K 5DM7H 3CCQK
chains in the Genus database with same CATH superfamily
3I56K 3CPWJ 3G6EK 3CCJK 3CCSK 1VQ4K 3CC2K 4UY8K 1S72K 3G71K 3CC7K 3J7ZK 1Q7YL 1VQKK 1M90L 1Q86L 3CCRK 1NJIL 1YIJK 3CCLK 4WFBH 4WFNH 1M1KL 3DLLH 1YI2K 2ZJRH 1YJNK 4WFAH 1KC8L 1VQMK 1YJWK 2ZJQH 1K9ML 2OTLK 1KQSJ 1YJ9K 5JVHH 3CCUK 5GADL 5HL7H 3G4SK 4IO9H 1Q82L 4WCEH 2QEXK 3OW2J 1JJ2J 5GAEL 1WHIA 1KD1L 1VQPK 1VQ6K 3CF5H 3CCMK 1YHQK 2QA4K 1VQ7K 5MLCM 4IOCH 1N8RL 3I55K 1K8AL 2ZJPH 5GAGL 3CD6K 4IOAH 3PIPH 1VQOK 1VQNK 4V19O 3CCVK 3CC4K 5DM6H 1QVGJ 5H1SM 1VQLK 5AN9E 1W2BJ 1QVFJ 3J7YL 4WF9H 5GAHL 1VQ5K 3CXCJ 2OTJK 1K73L 3CMAK 5JVGH 3PIOH 4U67H 3CMEK 1Q81L 1YITK 3CCEK 1VQ9K 1VQ8K 5DM7H 3CCQK
chains in the Genus database with same CATH topology
3I56K 3CPWJ 3G6EK 3CCJK 3CCSK 1VQ4K 3CC2K 4UY8K 1S72K 3G71K 3CC7K 3J7ZK 1Q7YL 1VQKK 1M90L 1Q86L 3CCRK 1NJIL 1YIJK 3CCLK 4WFBH 4WFNH 1M1KL 3DLLH 1YI2K 2ZJRH 1YJNK 4WFAH 1KC8L 1VQMK 1YJWK 2ZJQH 1K9ML 2OTLK 1KQSJ 1YJ9K 5JVHH 3CCUK 5GADL 5HL7H 3G4SK 4IO9H 1Q82L 4WCEH 2QEXK 3OW2J 1JJ2J 5GAEL 1WHIA 1KD1L 1VQPK 1VQ6K 3CF5H 3CCMK 1YHQK 2QA4K 1VQ7K 5MLCM 4IOCH 1N8RL 3I55K 1K8AL 2ZJPH 5GAGL 3CD6K 4IOAH 3PIPH 1VQOK 1VQNK 4V19O 3CCVK 3CC4K 5DM6H 1QVGJ 5H1SM 1VQLK 5AN9E 1W2BJ 1QVFJ 3J7YL 4WF9H 5GAHL 1VQ5K 3CXCJ 2OTJK 1K73L 3CMAK 5JVGH 3PIOH 4U67H 3CMEK 1Q81L 1YITK 3CCEK 1VQ9K 1VQ8K 5DM7H 3CCQK
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3I56 K;  3CPW J;  3G6E K;  3CCJ K;  3CCS K;  1VQ4 K;  3CC2 K;  4UY8 K;  1S72 K;  3G71 K;  3CC7 K;  3J7Z K;  1Q7Y L;  1VQK K;  1M90 L;  1Q86 L;  3CCR K;  1NJI L;  1YIJ K;  3CCL K;  4WFB H;  4WFN H;  1M1K L;  3DLL H;  1YI2 K;  2ZJR H;  1YJN K;  4WFA H;  1KC8 L;  1VQM K;  1YJW K;  2ZJQ H;  1K9M L;  2OTL K;  1KQS J;  1YJ9 K;  5JVH H;  3CCU K;  5GAD L;  5HL7 H;  3G4S K;  4IO9 H;  1Q82 L;  4WCE H;  2QEX K;  3OW2 J;  1JJ2 J;  5GAE L;  1WHI A;  1KD1 L;  1VQP K;  1VQ6 K;  3CF5 H;  3CCM K;  1YHQ K;  2QA4 K;  1VQ7 K;  5MLC M;  4IOC H;  1N8R L;  3I55 K;  1K8A L;  2ZJP H;  5GAG L;  3CD6 K;  4IOA H;  3PIP H;  1VQO K;  1VQN K;  4V19 O;  3CCV K;  3CC4 K;  5DM6 H;  1QVG J;  5H1S M;  1VQL K;  5AN9 E;  1W2B J;  1QVF J;  3J7Y L;  4WF9 H;  5GAH L;  1VQ5 K;  3CXC J;  2OTJ K;  1K73 L;  3CMA K;  5JVG H;  3PIO H;  4U67 H;  3CME K;  1Q81 L;  1YIT K;  3CCE K;  1VQ9 K;  1VQ8 K;  5DM7 H;  3CCQ K; 
#chains in the Genus database with same CATH topology
 3I56 K;  3CPW J;  3G6E K;  3CCJ K;  3CCS K;  1VQ4 K;  3CC2 K;  4UY8 K;  1S72 K;  3G71 K;  3CC7 K;  3J7Z K;  1Q7Y L;  1VQK K;  1M90 L;  1Q86 L;  3CCR K;  1NJI L;  1YIJ K;  3CCL K;  4WFB H;  4WFN H;  1M1K L;  3DLL H;  1YI2 K;  2ZJR H;  1YJN K;  4WFA H;  1KC8 L;  1VQM K;  1YJW K;  2ZJQ H;  1K9M L;  2OTL K;  1KQS J;  1YJ9 K;  5JVH H;  3CCU K;  5GAD L;  5HL7 H;  3G4S K;  4IO9 H;  1Q82 L;  4WCE H;  2QEX K;  3OW2 J;  1JJ2 J;  5GAE L;  1WHI A;  1KD1 L;  1VQP K;  1VQ6 K;  3CF5 H;  3CCM K;  1YHQ K;  2QA4 K;  1VQ7 K;  5MLC M;  4IOC H;  1N8R L;  3I55 K;  1K8A L;  2ZJP H;  5GAG L;  3CD6 K;  4IOA H;  3PIP H;  1VQO K;  1VQN K;  4V19 O;  3CCV K;  3CC4 K;  5DM6 H;  1QVG J;  5H1S M;  1VQL K;  5AN9 E;  1W2B J;  1QVF J;  3J7Y L;  4WF9 H;  5GAH L;  1VQ5 K;  3CXC J;  2OTJ K;  1K73 L;  3CMA K;  5JVG H;  3PIO H;  4U67 H;  3CME K;  1Q81 L;  1YIT K;  3CCE K;  1VQ9 K;  1VQ8 K;  5DM7 H;  3CCQ K; 
#chains in the Genus database with same CATH homology
 3I56 K;  3CPW J;  3G6E K;  3CCJ K;  3CCS K;  1VQ4 K;  3CC2 K;  4UY8 K;  1S72 K;  3G71 K;  3CC7 K;  3J7Z K;  1Q7Y L;  1VQK K;  1M90 L;  1Q86 L;  3CCR K;  1NJI L;  1YIJ K;  3CCL K;  4WFB H;  4WFN H;  1M1K L;  3DLL H;  1YI2 K;  2ZJR H;  1YJN K;  4WFA H;  1KC8 L;  1VQM K;  1YJW K;  2ZJQ H;  1K9M L;  2OTL K;  1KQS J;  1YJ9 K;  5JVH H;  3CCU K;  5GAD L;  5HL7 H;  3G4S K;  4IO9 H;  1Q82 L;  4WCE H;  2QEX K;  3OW2 J;  1JJ2 J;  5GAE L;  1WHI A;  1KD1 L;  1VQP K;  1VQ6 K;  3CF5 H;  3CCM K;  1YHQ K;  2QA4 K;  1VQ7 K;  5MLC M;  4IOC H;  1N8R L;  3I55 K;  1K8A L;  2ZJP H;  5GAG L;  3CD6 K;  4IOA H;  3PIP H;  1VQO K;  1VQN K;  4V19 O;  3CCV K;  3CC4 K;  5DM6 H;  1QVG J;  5H1S M;  1VQL K;  5AN9 E;  1W2B J;  1QVF J;  3J7Y L;  4WF9 H;  5GAH L;  1VQ5 K;  3CXC J;  2OTJ K;  1K73 L;  3CMA K;  5JVG H;  3PIO H;  4U67 H;  3CME K;  1Q81 L;  1YIT K;  3CCE K;  1VQ9 K;  1VQ8 K;  5DM7 H;  3CCQ K; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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