1KD1S

Co-crystal structure of spiramycin bound to the 50s ribosomal subunit of haloarcula marismortui
Total Genus 37
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
37
sequence length
150
structure length
150
Chain Sequence
GISYSVEADPDTTAKAMLRERQMSFKHSKAIAREIKGKTAGEAVDYLEAVIEGDQPVPFKQHNSGVGHKSKVDGWDAGRYPEKASKAFLDLLENAVGNADHQGFDGEAMTIKHVAAHKVGEQQGRKPRAMGRASAWNSPQVDVELILEEP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Ribosome
molecule keywords 23S RRNA
publication title The structures of four macrolide antibiotics bound to the large ribosomal subunit.
pubmed doi rcsb
total genus 37
structure length 150
sequence length 150
ec nomenclature
pdb deposition date 2001-11-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
S PF00237 Ribosomal_L22 Ribosomal protein L22p/L17e
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.90.470.10 Alpha Beta Alpha-Beta Complex Ribosomal Protein L22; Chain A Ribosomal protein L22/L17 1kd1S00
3CXCQ 3CPWQ 1VQNR 3CCSR 5GAGT 1VQ7R 1YITR 1YJNR 1Q81S 3CCQR 1VQ6R 4WFAP 2OTLR 1YJ9R 2ZJQP 1VQ5R 5GAHT 3G71R 1M90S 1M1KS 1Q7YS 1Q82S 1KC8S 5JVGP 1VQ8R 3G4SR 3PIOP 1KD1S 4WFNP 5MLCU 3I56R 5GAET 1N8RS 3CC7R 1VQ4R 5DM6P 3CCRR 1W2BQ 3CD6R 3J7YT 1KQSQ 4U67P 3CF5P 3DLLP 3OW2Q 1QVFQ 3CMER 1YIJR 3CCJR 1YHQR 2QEXR 4UY8S 3J7ZS 1NJIS 1I4JA 1VQ9R 3CMAR 3CCVR 1VQOR 1Q86S 1K8AS 3CCUR 1BXEA 4IO9P 2QA4R 1VQPR 5DM7P 4IOAP 1VQLR 1JJ2Q 4WF9P 5H1SU 3G6ER 2ZJPP 5GADT 2ZJRP 4V19W 1VQKR 1VQMR 1S72R 2OTJR 3CCMR 3CCER 4IOCP 1QVGQ 3CC4R 3CC2R 3PIPP 5JVHP 3I55R 5HL7P 1K9MS 1K73S 3CCLR 1YI2R 4WCEP 1YJWR 4WFBP
chains in the Genus database with same CATH superfamily
3CXCQ 3CPWQ 3HYKA 3CCSR 1VQNR 5GAGT 3QMNA 5CMOA 5CXDA 1VQ7R 1FTEA 1YITR 1YJNR 2BDDA 1Q81S 3CCQR 1VQ6R 4WFAP 2OTLR 2CG5A 1YJ9R 2ZJQP 1VQ5R 5GAHT 3G71R 1FTHA 1M90S 1M1KS 1Q7YS 3NE3B 1Q82S 3NE9A 5JVGP 1KC8S 2BYDA 1VQ8R 1FTFA 1F7LA 3G4SR 3PIOP 1KD1S 4WFNP 2JBZA 5MLCU 2WDOA 3I56R 5GAET 1N8RS 3CC7R 1VQ4R 5DM6P 3CCRR 1W2BQ 3CD6R 3J7YT 1KQSQ 2WATA 4U67P 3CF5P 3DLLP 3OW2Q 2WDSA 1QVFQ 3CMER 2QG8A 1YIJR 3CCJR 1YHQR 2QEXR 4UY8S 3NE1A 3J7ZS 1NJIS 1I4JA 1NBWA 1F7TA 1VQ9R 3CMAR 2WASA 3GWMA 3CCVR 1VQOR 1Q86S 1K8AS 3CCUR 1QR0A 2C43A 1BXEA 4IO9P 2QA4R 1VQPR 5DM7P 4MRTA 4IOAP 3HQJA 1JJ2Q 1VQLR 4WF9P 5H1SU 3H7QA 3G6ER 2ZJPP 5GADT 2ZJRP 4V19W 1VQKR 3NFDA 1VQMR 1S72R 2OTJR 3CCMR 1F80A 2D0OA 2JCAA 3CCER 4IOCP 1QVGQ 4HC6A 3CC4R 4DXEA 3CC2R 3PIPP 4JM7A 5JVHP 3I55R 5HL7P 2WDYA 1K9MS 1K73S 3CCLR 2D0PA 2WASB 1YI2R 4WCEP 1YJWR 4WFBP
chains in the Genus database with same CATH topology
3CXCQ 3CPWQ 1VQNR 3CCSR 5GAGT 1VQ7R 1YITR 1YJNR 1Q81S 3CCQR 1VQ6R 4WFAP 2OTLR 1YJ9R 2ZJQP 1VQ5R 5GAHT 3G71R 1M90S 1M1KS 1Q7YS 1Q82S 1KC8S 5JVGP 1VQ8R 3G4SR 3PIOP 1KD1S 4WFNP 5MLCU 3I56R 5GAET 1N8RS 3CC7R 1VQ4R 5DM6P 3CCRR 1W2BQ 3CD6R 3J7YT 1KQSQ 4U67P 3CF5P 3DLLP 3OW2Q 1QVFQ 3CMER 1YIJR 3CCJR 1YHQR 2QEXR 4UY8S 3J7ZS 1NJIS 1I4JA 1VQ9R 3CMAR 3CCVR 1VQOR 1Q86S 1K8AS 3CCUR 1BXEA 4IO9P 2QA4R 1VQPR 5DM7P 4IOAP 1VQLR 1JJ2Q 4WF9P 5H1SU 3G6ER 2ZJPP 5GADT 2ZJRP 4V19W 1VQKR 1VQMR 1S72R 2OTJR 3CCMR 3CCER 4IOCP 1QVGQ 3CC4R 3CC2R 3PIPP 5JVHP 3I55R 5HL7P 1K9MS 1K73S 3CCLR 1YI2R 4WCEP 1YJWR 4WFBP
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3CXC Q;  3CPW Q;  1VQN R;  3CCS R;  5GAG T;  1VQ7 R;  1YIT R;  1YJN R;  1Q81 S;  3CCQ R;  1VQ6 R;  4WFA P;  2OTL R;  1YJ9 R;  2ZJQ P;  1VQ5 R;  5GAH T;  3G71 R;  1M90 S;  1M1K S;  1Q7Y S;  1Q82 S;  1KC8 S;  5JVG P;  1VQ8 R;  3G4S R;  3PIO P;  1KD1 S;  4WFN P;  5MLC U;  3I56 R;  5GAE T;  1N8R S;  3CC7 R;  1VQ4 R;  5DM6 P;  3CCR R;  1W2B Q;  3CD6 R;  3J7Y T;  1KQS Q;  4U67 P;  3CF5 P;  3DLL P;  3OW2 Q;  1QVF Q;  3CME R;  1YIJ R;  3CCJ R;  1YHQ R;  2QEX R;  4UY8 S;  3J7Z S;  1NJI S;  1I4J A;  1VQ9 R;  3CMA R;  3CCV R;  1VQO R;  1Q86 S;  1K8A S;  3CCU R;  1BXE A;  4IO9 P;  2QA4 R;  1VQP R;  5DM7 P;  4IOA P;  1VQL R;  1JJ2 Q;  4WF9 P;  5H1S U;  3G6E R;  2ZJP P;  5GAD T;  2ZJR P;  4V19 W;  1VQK R;  1VQM R;  1S72 R;  2OTJ R;  3CCM R;  3CCE R;  4IOC P;  1QVG Q;  3CC4 R;  3CC2 R;  3PIP P;  5JVH P;  3I55 R;  5HL7 P;  1K9M S;  1K73 S;  3CCL R;  1YI2 R;  4WCE P;  1YJW R;  4WFB P; 
#chains in the Genus database with same CATH topology
 3CXC Q;  3CPW Q;  3HYK A;  3CCS R;  1VQN R;  5GAG T;  3QMN A;  5CMO A;  5CXD A;  1VQ7 R;  1FTE A;  1YIT R;  1YJN R;  2BDD A;  1Q81 S;  3CCQ R;  1VQ6 R;  4WFA P;  2OTL R;  2CG5 A;  1YJ9 R;  2ZJQ P;  1VQ5 R;  5GAH T;  3G71 R;  1FTH A;  1M90 S;  1M1K S;  1Q7Y S;  3NE3 B;  1Q82 S;  3NE9 A;  5JVG P;  1KC8 S;  2BYD A;  1VQ8 R;  1FTF A;  1F7L A;  3G4S R;  3PIO P;  1KD1 S;  4WFN P;  2JBZ A;  5MLC U;  2WDO A;  3I56 R;  5GAE T;  1N8R S;  3CC7 R;  1VQ4 R;  5DM6 P;  3CCR R;  1W2B Q;  3CD6 R;  3J7Y T;  1KQS Q;  2WAT A;  4U67 P;  3CF5 P;  3DLL P;  3OW2 Q;  2WDS A;  1QVF Q;  3CME R;  2QG8 A;  1YIJ R;  3CCJ R;  1YHQ R;  2QEX R;  4UY8 S;  3NE1 A;  3J7Z S;  1NJI S;  1I4J A;  1NBW A;  1F7T A;  1VQ9 R;  3CMA R;  2WAS A;  3GWM A;  3CCV R;  1VQO R;  1Q86 S;  1K8A S;  3CCU R;  1QR0 A;  2C43 A;  1BXE A;  4IO9 P;  2QA4 R;  1VQP R;  5DM7 P;  4MRT A;  4IOA P;  3HQJ A;  1JJ2 Q;  1VQL R;  4WF9 P;  5H1S U;  3H7Q A;  3G6E R;  2ZJP P;  5GAD T;  2ZJR P;  4V19 W;  1VQK R;  3NFD A;  1VQM R;  1S72 R;  2OTJ R;  3CCM R;  1F80 A;  2D0O A;  2JCA A;  3CCE R;  4IOC P;  1QVG Q;  4HC6 A;  3CC4 R;  4DXE A;  3CC2 R;  3PIP P;  4JM7 A;  5JVH P;  3I55 R;  5HL7 P;  2WDY A;  1K9M S;  1K73 S;  3CCL R;  2D0P A;  2WAS B;  1YI2 R;  4WCE P;  1YJW R;  4WFB P; 
#chains in the Genus database with same CATH homology
 3CXC Q;  3CPW Q;  1VQN R;  3CCS R;  5GAG T;  1VQ7 R;  1YIT R;  1YJN R;  1Q81 S;  3CCQ R;  1VQ6 R;  4WFA P;  2OTL R;  1YJ9 R;  2ZJQ P;  1VQ5 R;  5GAH T;  3G71 R;  1M90 S;  1M1K S;  1Q7Y S;  1Q82 S;  1KC8 S;  5JVG P;  1VQ8 R;  3G4S R;  3PIO P;  1KD1 S;  4WFN P;  5MLC U;  3I56 R;  5GAE T;  1N8R S;  3CC7 R;  1VQ4 R;  5DM6 P;  3CCR R;  1W2B Q;  3CD6 R;  3J7Y T;  1KQS Q;  4U67 P;  3CF5 P;  3DLL P;  3OW2 Q;  1QVF Q;  3CME R;  1YIJ R;  3CCJ R;  1YHQ R;  2QEX R;  4UY8 S;  3J7Z S;  1NJI S;  1I4J A;  1VQ9 R;  3CMA R;  3CCV R;  1VQO R;  1Q86 S;  1K8A S;  3CCU R;  1BXE A;  4IO9 P;  2QA4 R;  1VQP R;  5DM7 P;  4IOA P;  1VQL R;  1JJ2 Q;  4WF9 P;  5H1S U;  3G6E R;  2ZJP P;  5GAD T;  2ZJR P;  4V19 W;  1VQK R;  1VQM R;  1S72 R;  2OTJ R;  3CCM R;  3CCE R;  4IOC P;  1QVG Q;  3CC4 R;  3CC2 R;  3PIP P;  5JVH P;  3I55 R;  5HL7 P;  1K9M S;  1K73 S;  3CCL R;  1YI2 R;  4WCE P;  1YJW R;  4WFB P; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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