The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
78
|
sequence length |
217
|
structure length |
217
|
Chain Sequence |
DATNKKRKVFVSTILTFWNTDRRDFPWRHTRDPYVILITEILLRRTTAGHVKKIYDKFFVKYKCFEDILKTPKSEIAKDIKEIGLSNQRAEQLKELARVVINDYGGRVPRNRKAILDLPGVGKYTCAAVMCLAFGKKAAMVDANFVRVINRYFGGSYENLNYNHKALWELAETLVPGGKCRDFNLGLMDFSAIICAPRKPKCEKCGMSKLCSYYEKC
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Structure and activity of a thermostable thymine-DNA glycosylase: evidence for base twisting to remove mismatched normal DNA bases.
pubmed doi rcsb |
| molecule keywords |
Possible G-T mismatches repair enzyme
|
| molecule tags |
Hydrolase
|
| source organism |
Methanothermobacter thermautotrophicus
|
| total genus |
78
|
| structure length |
217
|
| sequence length |
217
|
| ec nomenclature |
ec
3.2.2.-: |
| pdb deposition date | 2001-11-14 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF00730 | HhH-GPD | HhH-GPD superfamily base excision DNA repair protein |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Orthogonal Bundle | Endonuclease III; domain 1 | Hypothetical protein; domain 2 | ||
| Mainly Alpha | Orthogonal Bundle | Endonuclease Iii, domain 2 | Helix-hairpin-Helix base-excision DNA repair enzymes (C-terminal) |
#chains in the Genus database with same CATH superfamily 1DIZ A; 3D4V A; 1ORP A; 4EA5 A; 1LWY A; 3I0X A; 3FHF A; 2NOF A; 1M3H A; 1N39 A; 3CVT A; 4B23 A; 1KG7 A; 1PVS A; 1WEG A; 3CWT A; 3N0U A; 3CW7 A; 4E9H A; 4EW4 A; 1FN7 A; 2NOH A; 2YG9 A; 2YG8 A; 4AI5 A; 3OH6 A; 1ORN A; 4EJZ A; 4OFA A; 2JG6 A; 2OFK A; 1PU8 A; 4B22 A; 4EVV A; 2NOI A; 2NOB A; 1KG5 A; 4HSB A; 5DPK A; 1YQL A; 1HU0 A; 2NOZ A; 1MPG A; 2NOE A; 4DK9 A; 2JHJ A; 1WEI A; 4EJY A; 3F0Z A; 1PU6 A; 4YPR A; 1YQM A; 1XG7 A; 1VRL A; 1LMZ A; 1KQJ A; 3F10 A; 4OFE A; 2ABK A; 4UOB A; 1MUD A; 1XQO A; 1KG3 A; 1YQK A; 2H56 A; 5CHZ A; 1MUY A; 1KG4 A; 2JHN A; 2I5W A; 5AN4 A; 4AI4 A; 4AIA A; 1PU7 A; 1RRS A; 4PII A; 1MUN A; 1KG2 A; 3CWS A; 1XQP A; 1WEF A; 3IHO A; 3N5N X; 5KN8 A; 4EW0 A; 2NOL A; 1KG6 A; 1NGN A; 1RRQ A; 3KNT A; 3I0W A; 4EA4 A; 3CVS A; 3G0Q A; 1YQR A; 4B21 A; 3OGD A; 4YOQ A; 3IH7 A; 3FHG A; 1NKU A; 3KTU A; 1P7M A; 4E9G A; 3OH9 A; 4YPH A; 1LWV A; 3CWU A; 1M3Q A; 5KN9 A; 1EBM A; 4UNF A; 4OFH A; 4B24 A; 1N3C A; 2XHI A; 1N3A A; 1P59 A; 2OFI A; 4E9E A; 3CWA A; 3S6I A; 1KEA A; 3FSP A; 1KO9 A; 4E9F A; 1LWW A; #chains in the Genus database with same CATH topology 4E7L A; 1DIZ A; 2JPS A; 4IKF A; 3D4V A; 1ORP A; 4E7J A; 4EA5 A; 1LWY A; 3I0X A; 3FHF A; 2NOF A; 4BDY A; 1M3H A; 1N39 A; 4B23 A; 3CVT A; 1KG7 A; 1PVS A; 1WEG A; 3CWT A; 3N0U A; 3OYD A; 3CW7 A; 4E9H A; 3OYN A; 3OYB A; 3OYL A; 4EW4 A; 1FN7 A; 3NNQ A; 3OS0 A; 2NOH A; 3OYH A; 2YG9 A; 2YG8 A; 3OYA A; 4AI5 A; 3OH6 A; 1ORN A; 4EJZ A; 3S3M A; 4OFA A; 2JG6 A; 3OYM A; 2OFK A; 1PU8 A; 4B22 A; 4EVV A; 3LCN A; 2NOI A; 2V75 A; 2W04 A; 3R2X C; 2NOB A; 1KG5 A; 4HSB A; 5DPK A; 1YQL A; 1HU0 A; 5FRM A; 2NOZ A; 1MPG A; 2NOE A; 4DK9 A; 2JHJ A; 1WEI A; 4EJY A; 3F0Z A; 4BE0 A; 1PU6 A; 4YPR A; 1YQM A; 3L2R A; 4E7K A; 1XG7 A; 1VRL A; 1LMZ A; 1KQJ A; 3F10 A; 4BE2 A; 2W03 A; 3VW4 A; 4OFE A; 2ABK A; 3S3O A; 4UOB A; 1MUD A; 4BDZ A; 1U84 A; 1KG3 A; 1XQO A; 2H56 A; 5CHZ A; 4NZG A; 1YQK A; 1MUY A; 1KG4 A; 2JHN A; 2I5W A; 5AN4 A; 4AI4 A; 3OYF A; 4AIA A; 1PU7 A; 1RRS A; 4PII A; 1MUN A; 1KG2 A; 3OYK A; 4ZTJ A; 3CWS A; 3OS1 A; 4E7I A; 3OYJ A; 4ZTF A; 1XQP A; 1WEF A; 3IHO A; 4E7H A; 3N5N X; 5KN8 A; 4EW0 A; 2NOL A; 3L2Q A; 1KG6 A; 1NGN A; 1RRQ A; 3KNT A; 3I0W A; 4EA4 A; 3CVS A; 3OYI A; 3G0Q A; 1YQR A; 3OGD A; 4B21 A; 4YOQ A; 3IH7 A; 3FHG A; 3OYC A; 1NKU A; 3KTU A; 4BAC A; 1P7M A; 4E9G A; 3OH9 A; 4YPH A; 1LWV A; 3L2U A; 5FRN A; 3CWU A; 1M3Q A; 5FRO A; 5KN9 A; 3L2W A; 3S3N A; 1EBM A; 3OY9 A; 4UNF A; 4OFH A; 4B24 A; 1N3C A; 2XHI A; 3OYE A; 1N3A A; 1P59 A; 4BE1 A; 3L2V A; 2OFI A; 4E9E A; 3CWA A; 3OYG A; 3S6I A; 1KEA A; 3FSP A; 1KO9 A; 4E9F A; 3OS2 A; 1LWW A; #chains in the Genus database with same CATH homology 1DIZ A; 3D4V A; 1ORP A; 4EA5 A; 1LWY A; 3I0X A; 3FHF A; 2NOF A; 1M3H A; 1N39 A; 3CVT A; 4B23 A; 1KG7 A; 1PVS A; 1WEG A; 3CWT A; 3N0U A; 3CW7 A; 4E9H A; 4EW4 A; 1FN7 A; 2NOH A; 2YG9 A; 2YG8 A; 4AI5 A; 3OH6 A; 1ORN A; 4EJZ A; 4OFA A; 2JG6 A; 2OFK A; 1PU8 A; 4B22 A; 4EVV A; 2NOI A; 2NOB A; 1KG5 A; 4HSB A; 5DPK A; 1YQL A; 1HU0 A; 2NOZ A; 1MPG A; 2NOE A; 4DK9 A; 2JHJ A; 1WEI A; 4EJY A; 3F0Z A; 1PU6 A; 4YPR A; 1YQM A; 1XG7 A; 1VRL A; 1LMZ A; 1KQJ A; 3F10 A; 4OFE A; 2ABK A; 4UOB A; 1MUD A; 1XQO A; 1KG3 A; 1YQK A; 2H56 A; 5CHZ A; 1MUY A; 1KG4 A; 2JHN A; 2I5W A; 5AN4 A; 4AI4 A; 4AIA A; 1PU7 A; 1RRS A; 4PII A; 1MUN A; 1KG2 A; 3CWS A; 1XQP A; 1WEF A; 3IHO A; 3N5N X; 5KN8 A; 4EW0 A; 2NOL A; 1KG6 A; 1NGN A; 1RRQ A; 3KNT A; 3I0W A; 4EA4 A; 3CVS A; 3G0Q A; 1YQR A; 4B21 A; 3OGD A; 4YOQ A; 3IH7 A; 3FHG A; 1NKU A; 3KTU A; 1P7M A; 4E9G A; 3OH9 A; 4YPH A; 1LWV A; 3CWU A; 1M3Q A; 5KN9 A; 1EBM A; 4UNF A; 4OFH A; 4B24 A; 1N3C A; 2XHI A; 1N3A A; 1P59 A; 2OFI A; 4E9E A; 3CWA A; 3S6I A; 1KEA A; 3FSP A; 1KO9 A; 4E9F A; 1LWW A;
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