1KEAA

Structure of a thermostable thymine-dna glycosylase
Total Genus 78
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
78
sequence length
217
structure length
217
Chain Sequence
DATNKKRKVFVSTILTFWNTDRRDFPWRHTRDPYVILITEILLRRTTAGHVKKIYDKFFVKYKCFEDILKTPKSEIAKDIKEIGLSNQRAEQLKELARVVINDYGGRVPRNRKAILDLPGVGKYTCAAVMCLAFGKKAAMVDANFVRVINRYFGGSYENLNYNHKALWELAETLVPGGKCRDFNLGLMDFSAIICAPRKPKCEKCGMSKLCSYYEKC
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords Possible G-T mismatches repair enzyme
publication title Structure and activity of a thermostable thymine-DNA glycosylase: evidence for base twisting to remove mismatched normal DNA bases.
pubmed doi rcsb
source organism Methanothermobacter thermautotrophicus
total genus 78
structure length 217
sequence length 217
ec nomenclature ec 3.2.2.-:
pdb deposition date 2001-11-14

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00730 HhH-GPD HhH-GPD superfamily base excision DNA repair protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.340.30 Mainly Alpha Orthogonal Bundle Endonuclease III; domain 1 Hypothetical protein; domain 2 1keaA02
1.10.1670.10 Mainly Alpha Orthogonal Bundle Endonuclease Iii, domain 2 Helix-hairpin-Helix base-excision DNA repair enzymes (C-terminal) 1keaA01
1WEFA 1P7MA 1LWVA 4E9FA 4OFHA 1FN7A 4E9EA 1PU6A 1NGNA 1ORPA 4B22A 1WEGA 1N3CA 2YG9A 1YQRA 2OFKA 2NOFA 2ABKA 4UOBA 1LWYA 2XHIA 1WEIA 2NOEA 2OFIA 2NOHA 1NKUA 3IH7A 1KG2A 1MUYA 4EVVA 1YQMA 3CWSA 3I0WA 1VRLA 4YPRA 1KQJA 1YQLA 1XQOA 3CWAA 3KTUA 1XQPA 2NOBA 4AI4A 1PU7A 4HSBA 4YOQA 3G0QA 1XG7A 3CW7A 1KEAA 1M3QA 1MUNA 2H56A 4PIIA 4EJYA 3CVSA 1KG3A 4AI5A 1M3HA 2YG8A 1MPGA 3S6IA 4DK9A 1RRQA 3F0ZA 2NOLA 4E9HA 5KN9A 2NOZA 3N5NX 4EJZA 3KNTA 4B24A 5CHZA 1KG6A 1KG4A 4YPHA 3IHOA 3CVTA 3OH9A 3N0UA 1HU0A 1KG7A 4E9GA 4OFEA 4EA5A 1ORNA 1DIZA 4B23A 1KO9A 4AIAA 5DPKA 2I5WA 1RRSA 2JHNA 4EW4A 3FHGA 3I0XA 2JG6A 4B21A 4EW0A 4OFAA 3F10A 1PU8A 3CWTA 2NOIA 3FHFA 2JHJA 3FSPA 5KN8A 3CWUA 4EA4A 4UNFA 1PVSA 5AN4A 3OGDA 1LWWA 1MUDA 1LMZA 1N3AA 3OH6A 3D4VA 1KG5A 1YQKA 1N39A 1P59A 1EBMA
chains in the Genus database with same CATH superfamily
1WEFA 1P7MA 3R2XC 1LWVA 3OYHA 4E9FA 4BDYA 4OFHA 2W03A 1FN7A 4E9EA 1PU6A 3OY9A 1NGNA 3OYDA 1ORPA 4B22A 4E7HA 1WEGA 1N3CA 2YG9A 1YQRA 2OFKA 4ZTFA 3NNQA 3L2WA 2NOFA 2ABKA 3OYMA 3OYIA 4UOBA 1LWYA 2XHIA 3L2VA 3S3NA 3OYAA 1WEIA 3OYGA 2NOEA 2OFIA 2NOHA 1NKUA 3L2RA 3IH7A 1KG2A 3VW4A 3OYJA 3S3MA 1MUYA 4EVVA 1YQMA 3CWSA 3I0WA 1VRLA 4YPRA 1KQJA 1YQLA 1XQOA 3OYKA 3CWAA 3KTUA 1XQPA 2NOBA 5FRMA 4BDZA 4AI4A 1PU7A 4HSBA 4YOQA 3G0QA 1XG7A 3CW7A 1KEAA 4BE1A 2JPSA 1M3QA 1MUNA 2H56A 4PIIA 4BACA 3OYEA 4EJYA 3CVSA 4BE0A 4E7KA 1KG3A 4AI5A 1M3HA 3OYFA 2YG8A 1MPGA 3S6IA 4DK9A 4IKFA 1RRQA 2W04A 4E7JA 3OS2A 3F0ZA 2NOLA 4E7IA 4E9HA 5KN9A 2NOZA 3N5NX 4EJZA 5FRNA 3KNTA 4E7LA 4B24A 5CHZA 1KG6A 1KG4A 3LCNA 4YPHA 3L2UA 3IHOA 3CVTA 3OH9A 3N0UA 3OS1A 1HU0A 1KG7A 4E9GA 4OFEA 4EA5A 1ORNA 1DIZA 4B23A 1KO9A 3OS0A 5FROA 4AIAA 3L2QA 3OYCA 4NZGA 5DPKA 2I5WA 1RRSA 2JHNA 4EW4A 3FHGA 2JG6A 3I0XA 3OYNA 4B21A 4EW0A 4OFAA 3F10A 1PU8A 3CWTA 2NOIA 3FHFA 2JHJA 1U84A 4ZTJA 3FSPA 5KN8A 3CWUA 3S3OA 4EA4A 4UNFA 1PVSA 5AN4A 3OGDA 1LWWA 2V75A 3OYBA 3OYLA 1MUDA 1LMZA 4BE2A 1N3AA 3OH6A 3D4VA 1KG5A 1YQKA 1N39A 1P59A 1EBMA
chains in the Genus database with same CATH topology
1WEFA 1P7MA 1LWVA 4E9FA 4OFHA 1FN7A 4E9EA 1PU6A 1NGNA 1ORPA 4B22A 1WEGA 1N3CA 2YG9A 1YQRA 2OFKA 2NOFA 2ABKA 4UOBA 1LWYA 2XHIA 1WEIA 2NOEA 2OFIA 2NOHA 1NKUA 3IH7A 1KG2A 1MUYA 4EVVA 1YQMA 3CWSA 3I0WA 1VRLA 4YPRA 1KQJA 1YQLA 1XQOA 3CWAA 3KTUA 1XQPA 2NOBA 4AI4A 1PU7A 4HSBA 4YOQA 3G0QA 1XG7A 3CW7A 1KEAA 1M3QA 1MUNA 2H56A 4PIIA 4EJYA 3CVSA 1KG3A 4AI5A 1M3HA 2YG8A 1MPGA 3S6IA 4DK9A 1RRQA 3F0ZA 2NOLA 4E9HA 5KN9A 2NOZA 3N5NX 4EJZA 3KNTA 4B24A 5CHZA 1KG6A 1KG4A 4YPHA 3IHOA 3CVTA 3OH9A 3N0UA 1HU0A 1KG7A 4E9GA 4OFEA 4EA5A 1ORNA 1DIZA 4B23A 1KO9A 4AIAA 5DPKA 2I5WA 1RRSA 2JHNA 4EW4A 3FHGA 3I0XA 2JG6A 4B21A 4EW0A 4OFAA 3F10A 1PU8A 3CWTA 2NOIA 3FHFA 2JHJA 3FSPA 5KN8A 3CWUA 4EA4A 4UNFA 1PVSA 5AN4A 3OGDA 1LWWA 1MUDA 1LMZA 1N3AA 3OH6A 3D4VA 1KG5A 1YQKA 1N39A 1P59A 1EBMA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1WEF A;  1P7M A;  1LWV A;  4E9F A;  4OFH A;  1FN7 A;  4E9E A;  1PU6 A;  1NGN A;  1ORP A;  4B22 A;  1WEG A;  1N3C A;  2YG9 A;  1YQR A;  2OFK A;  2NOF A;  2ABK A;  4UOB A;  1LWY A;  2XHI A;  1WEI A;  2NOE A;  2OFI A;  2NOH A;  1NKU A;  3IH7 A;  1KG2 A;  1MUY A;  4EVV A;  1YQM A;  3CWS A;  3I0W A;  1VRL A;  4YPR A;  1KQJ A;  1YQL A;  1XQO A;  3CWA A;  3KTU A;  1XQP A;  2NOB A;  4AI4 A;  1PU7 A;  4HSB A;  4YOQ A;  3G0Q A;  1XG7 A;  3CW7 A;  1KEA A;  1M3Q A;  1MUN A;  2H56 A;  4PII A;  4EJY A;  3CVS A;  1KG3 A;  4AI5 A;  1M3H A;  2YG8 A;  1MPG A;  3S6I A;  4DK9 A;  1RRQ A;  3F0Z A;  2NOL A;  4E9H A;  5KN9 A;  2NOZ A;  3N5N X;  4EJZ A;  3KNT A;  4B24 A;  5CHZ A;  1KG6 A;  1KG4 A;  4YPH A;  3IHO A;  3CVT A;  3OH9 A;  3N0U A;  1HU0 A;  1KG7 A;  4E9G A;  4OFE A;  4EA5 A;  1ORN A;  1DIZ A;  4B23 A;  1KO9 A;  4AIA A;  5DPK A;  2I5W A;  1RRS A;  2JHN A;  4EW4 A;  3FHG A;  3I0X A;  2JG6 A;  4B21 A;  4EW0 A;  4OFA A;  3F10 A;  1PU8 A;  3CWT A;  2NOI A;  3FHF A;  2JHJ A;  3FSP A;  5KN8 A;  3CWU A;  4EA4 A;  4UNF A;  1PVS A;  5AN4 A;  3OGD A;  1LWW A;  1MUD A;  1LMZ A;  1N3A A;  3OH6 A;  3D4V A;  1KG5 A;  1YQK A;  1N39 A;  1P59 A;  1EBM A; 
#chains in the Genus database with same CATH topology
 1WEF A;  1P7M A;  3R2X C;  1LWV A;  3OYH A;  4E9F A;  4BDY A;  4OFH A;  2W03 A;  1FN7 A;  4E9E A;  1PU6 A;  3OY9 A;  1NGN A;  3OYD A;  1ORP A;  4B22 A;  4E7H A;  1WEG A;  1N3C A;  2YG9 A;  1YQR A;  2OFK A;  4ZTF A;  3NNQ A;  3L2W A;  2NOF A;  2ABK A;  3OYM A;  3OYI A;  4UOB A;  1LWY A;  2XHI A;  3L2V A;  3S3N A;  3OYA A;  1WEI A;  3OYG A;  2NOE A;  2OFI A;  2NOH A;  1NKU A;  3L2R A;  3IH7 A;  1KG2 A;  3VW4 A;  3OYJ A;  3S3M A;  1MUY A;  4EVV A;  1YQM A;  3CWS A;  3I0W A;  1VRL A;  4YPR A;  1KQJ A;  1YQL A;  1XQO A;  3OYK A;  3CWA A;  3KTU A;  1XQP A;  2NOB A;  5FRM A;  4BDZ A;  4AI4 A;  1PU7 A;  4HSB A;  4YOQ A;  3G0Q A;  1XG7 A;  3CW7 A;  1KEA A;  4BE1 A;  2JPS A;  1M3Q A;  1MUN A;  2H56 A;  4PII A;  4BAC A;  3OYE A;  4EJY A;  3CVS A;  4BE0 A;  4E7K A;  1KG3 A;  4AI5 A;  1M3H A;  3OYF A;  2YG8 A;  1MPG A;  3S6I A;  4DK9 A;  4IKF A;  1RRQ A;  2W04 A;  4E7J A;  3OS2 A;  3F0Z A;  2NOL A;  4E7I A;  4E9H A;  5KN9 A;  2NOZ A;  3N5N X;  4EJZ A;  5FRN A;  3KNT A;  4E7L A;  4B24 A;  5CHZ A;  1KG6 A;  1KG4 A;  3LCN A;  4YPH A;  3L2U A;  3IHO A;  3CVT A;  3OH9 A;  3N0U A;  3OS1 A;  1HU0 A;  1KG7 A;  4E9G A;  4OFE A;  4EA5 A;  1ORN A;  1DIZ A;  4B23 A;  1KO9 A;  3OS0 A;  5FRO A;  4AIA A;  3L2Q A;  3OYC A;  4NZG A;  5DPK A;  2I5W A;  1RRS A;  2JHN A;  4EW4 A;  3FHG A;  2JG6 A;  3I0X A;  3OYN A;  4B21 A;  4EW0 A;  4OFA A;  3F10 A;  1PU8 A;  3CWT A;  2NOI A;  3FHF A;  2JHJ A;  1U84 A;  4ZTJ A;  3FSP A;  5KN8 A;  3CWU A;  3S3O A;  4EA4 A;  4UNF A;  1PVS A;  5AN4 A;  3OGD A;  1LWW A;  2V75 A;  3OYB A;  3OYL A;  1MUD A;  1LMZ A;  4BE2 A;  1N3A A;  3OH6 A;  3D4V A;  1KG5 A;  1YQK A;  1N39 A;  1P59 A;  1EBM A; 
#chains in the Genus database with same CATH homology
 1WEF A;  1P7M A;  1LWV A;  4E9F A;  4OFH A;  1FN7 A;  4E9E A;  1PU6 A;  1NGN A;  1ORP A;  4B22 A;  1WEG A;  1N3C A;  2YG9 A;  1YQR A;  2OFK A;  2NOF A;  2ABK A;  4UOB A;  1LWY A;  2XHI A;  1WEI A;  2NOE A;  2OFI A;  2NOH A;  1NKU A;  3IH7 A;  1KG2 A;  1MUY A;  4EVV A;  1YQM A;  3CWS A;  3I0W A;  1VRL A;  4YPR A;  1KQJ A;  1YQL A;  1XQO A;  3CWA A;  3KTU A;  1XQP A;  2NOB A;  4AI4 A;  1PU7 A;  4HSB A;  4YOQ A;  3G0Q A;  1XG7 A;  3CW7 A;  1KEA A;  1M3Q A;  1MUN A;  2H56 A;  4PII A;  4EJY A;  3CVS A;  1KG3 A;  4AI5 A;  1M3H A;  2YG8 A;  1MPG A;  3S6I A;  4DK9 A;  1RRQ A;  3F0Z A;  2NOL A;  4E9H A;  5KN9 A;  2NOZ A;  3N5N X;  4EJZ A;  3KNT A;  4B24 A;  5CHZ A;  1KG6 A;  1KG4 A;  4YPH A;  3IHO A;  3CVT A;  3OH9 A;  3N0U A;  1HU0 A;  1KG7 A;  4E9G A;  4OFE A;  4EA5 A;  1ORN A;  1DIZ A;  4B23 A;  1KO9 A;  4AIA A;  5DPK A;  2I5W A;  1RRS A;  2JHN A;  4EW4 A;  3FHG A;  3I0X A;  2JG6 A;  4B21 A;  4EW0 A;  4OFA A;  3F10 A;  1PU8 A;  3CWT A;  2NOI A;  3FHF A;  2JHJ A;  3FSP A;  5KN8 A;  3CWU A;  4EA4 A;  4UNF A;  1PVS A;  5AN4 A;  3OGD A;  1LWW A;  1MUD A;  1LMZ A;  1N3A A;  3OH6 A;  3D4V A;  1KG5 A;  1YQK A;  1N39 A;  1P59 A;  1EBM A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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