The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
236
|
sequence length |
683
|
structure length |
683
|
Chain Sequence |
QAPIAAYKPRSNEILWDGYGVPHIYGVDAPSAFYGYGWAQARSHGDNILRLYGEARGKGAEYWGPDYEQTTVWLLTNGVPERAQQWYAQQSPDFRANLDAFAAGINAYAQQNPDDISPEVRQVLPVSGADVVAHAHRLMNFLYVASPGRTLGEGDPPDLADQGANSWAVAPGKTANGNALLLQNPHLSWTTDYFTYYEAHLVTPDFEIYGATQIGLPVIRFAFNQRMGITNTVNGMVGATNYRLTLQDGGYLYDGQVRPFERRQASYRLRQADGSTVDKPLEIRSSVHGPVFERADGTAVAVRVAGLDRPGMLEQYFDMITAHSFDDYEAAMARMQVPTFNIVYADREGTINYSFNGVAPKRAEGDIAFWQGNVPGDSSRYLWTETHPLDDLPRVTNPPGGFVQNSNDPPWTPTWPVTYCPANHPSYLAPQTPHSLRAQQSVRLMSENDDLTLERFMALQFSHRAVMADRTLPDLIPAALIDPDPEVQAAARLLAAWDRDFTSDSRAALLFEEWARLFAGQNFAGQAAFATPWSLDKPVSTPYGVRDPKAAVDQLRTAIANTKRKYGAIDRPFGDASRMILNDVNVPGAAGYGNLGSFRVFTWSDPDENGIRTPVHGETWVAMIEFSTPVRAYGLMSYGNSRQPGTTHYSDQIERVSRADFRELLLRREQVEAAVQERTPFNF
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| molecule keywords |
precursor of cephalosporin acylase
|
| publication title |
Precursor structure of cephalosporin acylase. Insights into autoproteolytic activation in a new N-terminal hydrolase family
pubmed doi rcsb |
| source organism |
Brevundimonas diminuta
|
| molecule tags |
Hydrolase
|
| total genus |
236
|
| structure length |
683
|
| sequence length |
683
|
| ec nomenclature |
ec
3.5.1.93: Glutaryl-7-aminocephalosporanic-acid acylase. |
| pdb deposition date | 2001-11-16 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF01804 | Penicil_amidase | Penicillin amidase |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Orthogonal Bundle | Penicillin Amidohydrolase; domain 1 | Penicillin Amidohydrolase, domain 1 | ||
| Mainly Alpha | Orthogonal Bundle | Penicillin amidase (Acylase) alpha subunit, N-terminal domain | Penicillin amidase (Acylase) alpha subunit, N-terminal domain | ||
| Mainly Beta | Roll | Penicillin G acylase, beta-roll domain | Penicillin G acylase, beta-roll domain | ||
| Alpha Beta | 4-Layer Sandwich | Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 | Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 |
