1KFYC

Quinol-fumarate reductase with quinol inhibitor 2-[1-(4-chloro-phenyl)-ethyl]-4,6-dinitro-phenol
Total Genus 45
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
45
sequence length
130
structure length
130
Chain Sequence
TTKRKPYVRPMTSTWWKKLPFYRFYMLREGTAVPAVWFSIELIFGLFALKNGPEAWAGFVDFLQNPVIVIINLITLAAALLHTKTWFELAPKAANIIVKDEKMGPEPIIKSLWAVTVVATIVILFVALYW
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystallographic studies of the Escherichia coli quinol-fumarate reductase with inhibitors bound to the quinol-binding site.
pubmed doi rcsb
molecule tags Oxidoreductase
source organism Escherichia coli
molecule keywords FUMARATE REDUCTASE FLAVOPROTEIN
total genus 45
structure length 130
sequence length 130
chains with identical sequence O
ec nomenclature
pdb deposition date 2001-11-24

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
C PF02300 Fumarate_red_C Fumarate reductase subunit C
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1300.10 Mainly Alpha Up-down Bundle 3 helical TM bundles of succinate and fumarate reductases Fumarate reductase/succinate dehydrogenase, transmembrane subunit 1kfyC00
3CIRD 3AEFC 1NEKC 1NEND 3SFEC 3AE8D 3VRAC 1KF6C 4YT0C 3AE9D 2WDQC 3AEBD 3SFDD 2WP9D 3AE3C 3AE5D 2WQYC 3AECC 3AEDC 4YSZD 3AEGD 4YSXD 3AE1C 3AE6C 1ZOYD 3AE2D 2WDVC 3AE7D 2WDRD 5C2TC 2ACZC 2H88D 2WU2C 4YSYD 3AE4C 1L0VC 2WU5D 4KX6C 2FBWC 3VRBC 3AEFD 1NEKD 3SFED 2B76C 3VRAD 1KF6D 4YT0D 2WDQD 1ZP0C 2WS3C 3ABVC 3AE3D 2WQYD 3AECD 3AEDD 3AEAC 3AE1D 3AE6D 1KFYC 2WDVD 4YTMC 5C2TD 2ACZD 2WU2D 3VR9C 1YQ3C 1L0VD 3AE4D 3P4PC 3P4RC 2BS4C 2H89C 4YTPC 1YQ4C 3VR8C 5C3JC 4YTNC 3P4SC 4KX6D 2FBWD 3P4QC 3VRBD 2BS3C 4YXDC 2B76D 3AEEC 3CIRC 1NENC 3AE8C 2WS3D 1ZP0D 3AE9C 3ABVD 3AEBC 3SFDC 2WP9C 3AEAD 3AE5C 4YSZC 1KFYD 3AEGC 4YSXC 1E7PC 4YTMD 1ZOYC 3AE2C 3AE7C 2WDRC 3VR9D 1QLBC 1YQ3D 2H88C 3P4PD 3P4RD 4YSYC 5C3JD 2H89D 4YTPD 1YQ4D 3VR8D 2BS2C 2WU5C 4YTND 3P4SD 3P4QD 4YXDD 3AEED
chains in the Genus database with same CATH superfamily
3CIRD 3AEFC 1NEKC 1NEND 3SFEC 4DDGA 3AE8D 3VRAC 1KF6C 4YT0C 3AE9D 2WDQC 3AEBD 3SFDD 2WP9D 3AE3C 3AE5D 2WQYC 3AECC 3AEDC 4YSZD 3AEGD 4YSXD 3AE1C 3AE6C 1ZOYD 3AE2D 2WDVC 3AE7D 2WDRD 5C2TC 2ACZC 2H88D 2WU2C 4YSYD 4I6LA 4DHIB 3VONA 3AE4C 1L0VC 2WU5D 4DHJA 4KX6C 2FBWC 3VRBC 4DDIA 3AEFD 1NEKD 3SFED 2B76C 3VRAD 1KF6D 4YT0D 2WDQD 1ZP0C 2WS3C 4DHZA 3ABVC 3AE3D 2WQYD 3AECD 3AEDD 3AEAC 3AE1D 3AE6D 1KFYC 4FJVA 2WDVD 4LDTA 4YTMC 5C2TD 2ACZD 2WU2D 3VR9C 1YQ3C 1L0VD 3AE4D 3P4PC 3P4RC 2BS4C 2H89C 4YTPC 1YQ4C 3VR8C 5C3JC 4YTNC 3P4SC 4KX6D 2FBWD 3P4QC 3VRBD 2BS3C 2ZFYA 4YXDC 2B76D 3AEEC 3CIRC 1NENC 3AE8C 2WS3D 1ZP0D 3AE9C 3ABVD 3AEBC 3SFDC 2WP9C 3AEAD 3AE5C 4YSZC 1KFYD 3AEGC 4YSXC 1E7PC 4YTMD 1ZOYC 3AE2C 3AE7C 2WDRC 3VR9D 1QLBC 1YQ3D 2H88C 3P4PD 3P4RD 4YSYC 5C3JD 2H89D 4YTPD 1YQ4D 3VR8D 2BS2C 2WU5C 4YTND 3P4SD 3P4QD 1TFFA 4YXDD 3AEED
chains in the Genus database with same CATH topology
3CIRD 3AEFC 1NEKC 1NEND 3SFEC 3AE8D 3VRAC 1KF6C 4YT0C 3AE9D 2WDQC 3AEBD 3SFDD 2WP9D 3AE3C 3AE5D 2WQYC 3AECC 3AEDC 4YSZD 3AEGD 4YSXD 3AE1C 3AE6C 1ZOYD 3AE2D 2WDVC 3AE7D 2WDRD 5C2TC 2ACZC 2H88D 2WU2C 4YSYD 3AE4C 1L0VC 2WU5D 4KX6C 2FBWC 3VRBC 3AEFD 1NEKD 3SFED 2B76C 3VRAD 1KF6D 4YT0D 2WDQD 1ZP0C 2WS3C 3ABVC 3AE3D 2WQYD 3AECD 3AEDD 3AEAC 3AE1D 3AE6D 1KFYC 2WDVD 4YTMC 5C2TD 2ACZD 2WU2D 3VR9C 1YQ3C 1L0VD 3AE4D 3P4PC 3P4RC 2BS4C 2H89C 4YTPC 1YQ4C 3VR8C 5C3JC 4YTNC 3P4SC 4KX6D 2FBWD 3P4QC 3VRBD 2BS3C 4YXDC 2B76D 3AEEC 3CIRC 1NENC 3AE8C 2WS3D 1ZP0D 3AE9C 3ABVD 3AEBC 3SFDC 2WP9C 3AEAD 3AE5C 4YSZC 1KFYD 3AEGC 4YSXC 1E7PC 4YTMD 1ZOYC 3AE2C 3AE7C 2WDRC 3VR9D 1QLBC 1YQ3D 2H88C 3P4PD 3P4RD 4YSYC 5C3JD 2H89D 4YTPD 1YQ4D 3VR8D 2BS2C 2WU5C 4YTND 3P4SD 3P4QD 4YXDD 3AEED
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3CIR D;  3AEF C;  1NEK C;  1NEN D;  3SFE C;  3AE8 D;  3VRA C;  1KF6 C;  4YT0 C;  3AE9 D;  2WDQ C;  3AEB D;  3SFD D;  2WP9 D;  3AE3 C;  3AE5 D;  2WQY C;  3AEC C;  3AED C;  4YSZ D;  3AEG D;  4YSX D;  3AE1 C;  3AE6 C;  1ZOY D;  3AE2 D;  2WDV C;  3AE7 D;  2WDR D;  5C2T C;  2ACZ C;  2H88 D;  2WU2 C;  4YSY D;  3AE4 C;  1L0V C;  2WU5 D;  4KX6 C;  2FBW C;  3VRB C;  3AEF D;  1NEK D;  3SFE D;  2B76 C;  3VRA D;  1KF6 D;  4YT0 D;  2WDQ D;  1ZP0 C;  2WS3 C;  3ABV C;  3AE3 D;  2WQY D;  3AEC D;  3AED D;  3AEA C;  3AE1 D;  3AE6 D;  1KFY C;  2WDV D;  4YTM C;  5C2T D;  2ACZ D;  2WU2 D;  3VR9 C;  1YQ3 C;  1L0V D;  3AE4 D;  3P4P C;  3P4R C;  2BS4 C;  2H89 C;  4YTP C;  1YQ4 C;  3VR8 C;  5C3J C;  4YTN C;  3P4S C;  4KX6 D;  2FBW D;  3P4Q C;  3VRB D;  2BS3 C;  4YXD C;  2B76 D;  3AEE C;  3CIR C;  1NEN C;  3AE8 C;  2WS3 D;  1ZP0 D;  3AE9 C;  3ABV D;  3AEB C;  3SFD C;  2WP9 C;  3AEA D;  3AE5 C;  4YSZ C;  1KFY D;  3AEG C;  4YSX C;  1E7P C;  4YTM D;  1ZOY C;  3AE2 C;  3AE7 C;  2WDR C;  3VR9 D;  1QLB C;  1YQ3 D;  2H88 C;  3P4P D;  3P4R D;  4YSY C;  5C3J D;  2H89 D;  4YTP D;  1YQ4 D;  3VR8 D;  2BS2 C;  2WU5 C;  4YTN D;  3P4S D;  3P4Q D;  4YXD D;  3AEE D; 
#chains in the Genus database with same CATH topology
 3CIR D;  3AEF C;  1NEK C;  1NEN D;  3SFE C;  4DDG A;  3AE8 D;  3VRA C;  1KF6 C;  4YT0 C;  3AE9 D;  2WDQ C;  3AEB D;  3SFD D;  2WP9 D;  3AE3 C;  3AE5 D;  2WQY C;  3AEC C;  3AED C;  4YSZ D;  3AEG D;  4YSX D;  3AE1 C;  3AE6 C;  1ZOY D;  3AE2 D;  2WDV C;  3AE7 D;  2WDR D;  5C2T C;  2ACZ C;  2H88 D;  2WU2 C;  4YSY D;  4I6L A;  4DHI B;  3VON A;  3AE4 C;  1L0V C;  2WU5 D;  4DHJ A;  4KX6 C;  2FBW C;  3VRB C;  4DDI A;  3AEF D;  1NEK D;  3SFE D;  2B76 C;  3VRA D;  1KF6 D;  4YT0 D;  2WDQ D;  1ZP0 C;  2WS3 C;  4DHZ A;  3ABV C;  3AE3 D;  2WQY D;  3AEC D;  3AED D;  3AEA C;  3AE1 D;  3AE6 D;  1KFY C;  4FJV A;  2WDV D;  4LDT A;  4YTM C;  5C2T D;  2ACZ D;  2WU2 D;  3VR9 C;  1YQ3 C;  1L0V D;  3AE4 D;  3P4P C;  3P4R C;  2BS4 C;  2H89 C;  4YTP C;  1YQ4 C;  3VR8 C;  5C3J C;  4YTN C;  3P4S C;  4KX6 D;  2FBW D;  3P4Q C;  3VRB D;  2BS3 C;  2ZFY A;  4YXD C;  2B76 D;  3AEE C;  3CIR C;  1NEN C;  3AE8 C;  2WS3 D;  1ZP0 D;  3AE9 C;  3ABV D;  3AEB C;  3SFD C;  2WP9 C;  3AEA D;  3AE5 C;  4YSZ C;  1KFY D;  3AEG C;  4YSX C;  1E7P C;  4YTM D;  1ZOY C;  3AE2 C;  3AE7 C;  2WDR C;  3VR9 D;  1QLB C;  1YQ3 D;  2H88 C;  3P4P D;  3P4R D;  4YSY C;  5C3J D;  2H89 D;  4YTP D;  1YQ4 D;  3VR8 D;  2BS2 C;  2WU5 C;  4YTN D;  3P4S D;  3P4Q D;  1TFF A;  4YXD D;  3AEE D; 
#chains in the Genus database with same CATH homology
 3CIR D;  3AEF C;  1NEK C;  1NEN D;  3SFE C;  3AE8 D;  3VRA C;  1KF6 C;  4YT0 C;  3AE9 D;  2WDQ C;  3AEB D;  3SFD D;  2WP9 D;  3AE3 C;  3AE5 D;  2WQY C;  3AEC C;  3AED C;  4YSZ D;  3AEG D;  4YSX D;  3AE1 C;  3AE6 C;  1ZOY D;  3AE2 D;  2WDV C;  3AE7 D;  2WDR D;  5C2T C;  2ACZ C;  2H88 D;  2WU2 C;  4YSY D;  3AE4 C;  1L0V C;  2WU5 D;  4KX6 C;  2FBW C;  3VRB C;  3AEF D;  1NEK D;  3SFE D;  2B76 C;  3VRA D;  1KF6 D;  4YT0 D;  2WDQ D;  1ZP0 C;  2WS3 C;  3ABV C;  3AE3 D;  2WQY D;  3AEC D;  3AED D;  3AEA C;  3AE1 D;  3AE6 D;  1KFY C;  2WDV D;  4YTM C;  5C2T D;  2ACZ D;  2WU2 D;  3VR9 C;  1YQ3 C;  1L0V D;  3AE4 D;  3P4P C;  3P4R C;  2BS4 C;  2H89 C;  4YTP C;  1YQ4 C;  3VR8 C;  5C3J C;  4YTN C;  3P4S C;  4KX6 D;  2FBW D;  3P4Q C;  3VRB D;  2BS3 C;  4YXD C;  2B76 D;  3AEE C;  3CIR C;  1NEN C;  3AE8 C;  2WS3 D;  1ZP0 D;  3AE9 C;  3ABV D;  3AEB C;  3SFD C;  2WP9 C;  3AEA D;  3AE5 C;  4YSZ C;  1KFY D;  3AEG C;  4YSX C;  1E7P C;  4YTM D;  1ZOY C;  3AE2 C;  3AE7 C;  2WDR C;  3VR9 D;  1QLB C;  1YQ3 D;  2H88 C;  3P4P D;  3P4R D;  4YSY C;  5C3J D;  2H89 D;  4YTP D;  1YQ4 D;  3VR8 D;  2BS2 C;  2WU5 C;  4YTN D;  3P4S D;  3P4Q D;  4YXD D;  3AEE D; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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